Wall clock time and date at job start Mon Mar 30 2020 06:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47011 * 2 1 4 4 C 1.52996 * 109.47453 * 119.99864 * 2 1 3 5 5 C 1.50702 * 109.47122 * 240.00240 * 2 1 3 6 6 N 1.31789 * 119.92685 * 359.97438 * 5 2 1 7 7 C 1.32222 * 122.22362 * 179.97438 * 6 5 2 8 8 C 1.37948 * 121.45757 * 0.02562 * 7 6 5 9 9 C 1.39131 * 118.86839 * 359.97438 * 8 7 6 10 10 C 1.39189 * 119.92686 * 179.71926 * 5 2 1 11 11 C 1.46513 * 134.88274 * 0.66881 * 10 5 2 12 12 C 1.34339 * 107.02947 * 179.51809 * 11 10 5 13 13 N 1.37118 * 109.95651 * 359.78409 * 12 11 10 14 14 C 1.37229 * 125.08212 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00260 * 158.99625 * 14 13 12 16 16 C 1.38869 * 119.99885 * 338.99904 * 14 13 12 17 17 N 1.31427 * 119.99939 * 349.15552 * 16 14 13 18 18 Si 1.86803 * 119.99854 * 169.15301 * 16 14 13 19 19 H 1.48504 * 109.46658 * 90.00209 * 18 16 14 20 20 H 1.48498 * 109.47111 * 209.99615 * 18 16 14 21 21 H 1.48497 * 109.47403 * 330.00048 * 18 16 14 22 22 H 1.08999 * 109.47236 * 60.00412 * 1 2 3 23 23 H 1.08994 * 109.46982 * 299.99684 * 1 2 3 24 24 H 1.09003 * 109.46575 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47159 * 60.00087 * 3 2 1 26 26 H 1.08994 * 109.47686 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47072 * 300.00316 * 3 2 1 28 28 H 1.09000 * 109.46879 * 60.00476 * 4 2 1 29 29 H 1.08999 * 109.47406 * 180.02562 * 4 2 1 30 30 H 1.09003 * 109.47120 * 300.00160 * 4 2 1 31 31 H 1.08002 * 119.27575 * 179.97438 * 7 6 5 32 32 H 1.07999 * 120.56276 * 179.97438 * 8 7 6 33 33 H 1.08009 * 126.48143 * 359.28413 * 11 10 5 34 34 H 1.08003 * 125.01989 * 179.80551 * 12 11 10 35 35 H 0.96997 * 119.99781 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 2.0324 -0.7104 -1.2305 6 7 1.1747 -1.2111 -2.0968 7 6 1.5651 -1.8422 -3.1911 8 6 2.9020 -2.0119 -3.4861 9 6 3.8535 -1.5039 -2.6073 10 6 3.4011 -0.8315 -1.4522 11 6 4.6063 -0.4195 -0.7280 12 6 5.6604 -0.8358 -1.4493 13 7 5.2286 -1.4865 -2.5764 14 6 6.0461 -2.0371 -3.5312 15 1 5.6666 -2.8045 -4.1897 16 6 7.3613 -1.6077 -3.6507 17 7 7.7642 -0.5368 -3.0041 18 14 8.5578 -2.5524 -4.7303 19 1 8.5155 -2.0067 -6.1108 20 1 9.9321 -2.4136 -4.1851 21 1 8.1769 -3.9875 -4.7533 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 1.6767 1.9564 0.8900 26 1 3.1299 1.4427 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6768 -1.7489 1.2492 29 1 3.1301 -0.7208 1.2494 30 1 1.6768 -0.2073 2.1392 31 1 0.8210 -2.2344 -3.8686 32 1 3.2047 -2.5303 -4.3839 33 1 4.6406 0.1205 0.2068 34 1 6.6950 -0.6811 -1.1809 35 1 8.6828 -0.2366 -3.0879 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821283180.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:20 Heat of formation + Delta-G solvation = 49.616084 kcal Electronic energy + Delta-G solvation = -17607.375595 eV Core-core repulsion = 14991.158720 eV Total energy + Delta-G solvation = -2616.216875 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.46178 -37.75732 -35.63860 -33.38314 -30.65958 -29.63748 -27.89470 -26.80637 -26.77849 -24.96733 -22.59251 -21.17226 -20.00809 -19.16299 -17.29952 -15.80337 -15.37814 -14.85960 -14.47069 -14.01993 -13.94628 -13.62533 -13.40154 -13.10507 -12.40603 -12.10936 -11.86426 -11.70653 -11.61382 -11.51514 -11.27795 -11.17633 -10.98194 -10.77432 -10.61959 -10.43967 -10.21235 -9.96212 -9.37020 -8.64877 -8.48852 -7.58338 -6.96529 -6.65719 -4.41673 2.00667 2.66380 2.96870 2.97991 3.02876 3.73335 3.96587 4.70572 4.71984 4.98660 4.99658 5.33249 5.57628 5.65067 5.84728 6.02033 6.05113 6.07699 6.21732 6.25733 6.27847 6.33092 6.37825 6.46150 6.57310 6.68152 6.77972 6.81162 6.89013 6.93411 6.99888 7.06229 7.36885 7.51996 7.82817 8.00390 8.36579 8.87691 9.13529 9.30479 10.18949 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.037511 B = 0.006851 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.269535 B = 4085.801321 C = 4603.569142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.010 4.010 3 C -0.138 4.138 4 C -0.137 4.137 5 C 0.176 3.824 6 N -0.520 5.520 7 C 0.053 3.947 8 C -0.162 4.162 9 C 0.071 3.929 10 C -0.158 4.158 11 C -0.260 4.260 12 C 0.081 3.919 13 N -0.282 5.282 14 C -0.343 4.343 15 H 0.106 0.894 16 C 0.044 3.956 17 N -0.851 5.851 18 Si 0.940 3.060 19 H -0.271 1.271 20 H -0.275 1.275 21 H -0.264 1.264 22 H 0.055 0.945 23 H 0.041 0.959 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.137 0.863 32 H 0.113 0.887 33 H 0.129 0.871 34 H 0.172 0.828 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.015 0.336 3.921 6.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.010 4.010 3 C -0.196 4.196 4 C -0.195 4.195 5 C 0.030 3.970 6 N -0.231 5.231 7 C -0.096 4.096 8 C -0.185 4.185 9 C -0.047 4.047 10 C -0.166 4.166 11 C -0.285 4.285 12 C -0.053 4.053 13 N 0.054 4.946 14 C -0.471 4.471 15 H 0.123 0.877 16 C -0.165 4.165 17 N -0.483 5.483 18 Si 0.764 3.236 19 H -0.196 1.196 20 H -0.200 1.200 21 H -0.188 1.188 22 H 0.075 0.925 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.154 0.846 32 H 0.131 0.869 33 H 0.147 0.853 34 H 0.189 0.811 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.469 0.354 3.748 6.640 hybrid contribution 1.693 -0.473 -0.957 2.001 sum -3.777 -0.119 2.791 4.697 Atomic orbital electron populations 1.21618 0.94047 1.01813 1.00337 1.19276 0.95575 0.94497 0.91701 1.21893 1.02312 0.94522 1.00840 1.21888 1.02254 0.99722 0.95656 1.20257 0.87575 0.95083 0.94047 1.67238 1.38473 1.13313 1.04060 1.21802 0.92725 0.99874 0.95198 1.20784 0.92631 1.05036 1.00027 1.18379 0.84867 1.03447 0.98017 1.19593 0.93588 1.05659 0.97782 1.21260 0.90040 1.14257 1.02967 1.22217 0.99608 0.97537 0.85902 1.40149 1.01803 1.37266 1.15343 1.19856 0.92681 1.20474 1.14068 0.87659 1.25508 0.98343 0.95081 0.97532 1.69876 1.18799 1.19720 1.39864 0.85710 0.78732 0.79800 0.79312 1.19623 1.20002 1.18822 0.92546 0.93946 0.92557 0.92974 0.91390 0.93082 0.93097 0.91430 0.92969 0.84596 0.86929 0.85321 0.81058 0.90890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.85 7.69 37.16 0.29 -1.56 16 2 C -0.01 -0.16 0.80 -155.66 -0.12 -0.29 16 3 C -0.14 -2.18 8.28 37.16 0.31 -1.87 16 4 C -0.14 -2.12 8.28 37.16 0.31 -1.82 16 5 C 0.18 3.69 5.61 -82.26 -0.46 3.23 16 6 N -0.52 -10.96 9.02 -9.24 -0.08 -11.04 16 7 C 0.05 1.07 11.15 -17.49 -0.19 0.88 16 8 C -0.16 -3.60 10.06 -39.36 -0.40 -4.00 16 9 C 0.07 1.76 6.79 -83.88 -0.57 1.19 16 10 C -0.16 -3.64 5.57 -105.12 -0.59 -4.22 16 11 C -0.26 -5.79 8.72 -37.62 -0.33 -6.11 16 12 C 0.08 2.00 9.89 -16.56 -0.16 1.84 16 13 N -0.28 -7.34 2.91 -59.66 -0.17 -7.51 16 14 C -0.34 -8.85 9.96 -14.90 -0.15 -9.00 16 15 H 0.11 2.60 7.85 -52.49 -0.41 2.19 16 16 C 0.04 1.08 5.35 -17.49 -0.09 0.98 16 17 N -0.85 -21.45 10.84 55.49 0.60 -20.85 16 18 Si 0.94 18.64 29.57 -169.99 -5.03 13.61 16 19 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 20 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 21 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 22 H 0.06 0.90 8.06 -51.93 -0.42 0.48 16 23 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.89 8.06 -51.93 -0.42 0.47 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 1.14 5.83 -51.93 -0.30 0.84 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 1.10 5.83 -51.93 -0.30 0.79 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.14 2.30 8.06 -52.49 -0.42 1.88 16 32 H 0.11 2.31 8.06 -52.49 -0.42 1.89 16 33 H 0.13 2.49 6.31 -52.48 -0.33 2.16 16 34 H 0.17 4.22 6.34 -52.48 -0.33 3.89 16 35 H 0.28 6.53 8.31 -40.82 -0.34 6.19 16 LS Contribution 285.23 15.07 4.30 4.30 Total: -1.00 -27.53 285.23 -7.16 -34.69 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -4.61 Total: 7.54 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -2.17 Total: -20.75 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.34 Total: -39.40 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.53 -7.16 -34.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821283180.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.311 kcal (2) G-P(sol) polarization free energy of solvation -27.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds