Wall clock time and date at job start Mon Mar 30 2020 06:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47011 * 2 1 4 4 C 1.52996 * 109.47453 * 119.99864 * 2 1 3 5 5 C 1.50702 * 109.47122 * 240.00240 * 2 1 3 6 6 N 1.31789 * 119.92685 * 359.97438 * 5 2 1 7 7 C 1.32222 * 122.22362 * 179.97438 * 6 5 2 8 8 C 1.37948 * 121.45757 * 0.02562 * 7 6 5 9 9 C 1.39131 * 118.86839 * 359.97438 * 8 7 6 10 10 C 1.39189 * 119.92686 * 179.71926 * 5 2 1 11 11 C 1.46513 * 134.88274 * 0.66881 * 10 5 2 12 12 C 1.34339 * 107.02947 * 179.51809 * 11 10 5 13 13 N 1.37118 * 109.95651 * 359.78409 * 12 11 10 14 14 C 1.37229 * 125.08212 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00260 * 158.99625 * 14 13 12 16 16 C 1.38869 * 119.99885 * 338.99904 * 14 13 12 17 17 N 1.31427 * 119.99939 * 349.15552 * 16 14 13 18 18 Si 1.86803 * 119.99854 * 169.15301 * 16 14 13 19 19 H 1.48504 * 109.46658 * 90.00209 * 18 16 14 20 20 H 1.48498 * 109.47111 * 209.99615 * 18 16 14 21 21 H 1.48497 * 109.47403 * 330.00048 * 18 16 14 22 22 H 1.08999 * 109.47236 * 60.00412 * 1 2 3 23 23 H 1.08994 * 109.46982 * 299.99684 * 1 2 3 24 24 H 1.09003 * 109.46575 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47159 * 60.00087 * 3 2 1 26 26 H 1.08994 * 109.47686 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47072 * 300.00316 * 3 2 1 28 28 H 1.09000 * 109.46879 * 60.00476 * 4 2 1 29 29 H 1.08999 * 109.47406 * 180.02562 * 4 2 1 30 30 H 1.09003 * 109.47120 * 300.00160 * 4 2 1 31 31 H 1.08002 * 119.27575 * 179.97438 * 7 6 5 32 32 H 1.07999 * 120.56276 * 179.97438 * 8 7 6 33 33 H 1.08009 * 126.48143 * 359.28413 * 11 10 5 34 34 H 1.08003 * 125.01989 * 179.80551 * 12 11 10 35 35 H 0.96997 * 119.99781 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 2.0324 -0.7104 -1.2305 6 7 1.1747 -1.2111 -2.0968 7 6 1.5651 -1.8422 -3.1911 8 6 2.9020 -2.0119 -3.4861 9 6 3.8535 -1.5039 -2.6073 10 6 3.4011 -0.8315 -1.4522 11 6 4.6063 -0.4195 -0.7280 12 6 5.6604 -0.8358 -1.4493 13 7 5.2286 -1.4865 -2.5764 14 6 6.0461 -2.0371 -3.5312 15 1 5.6666 -2.8045 -4.1897 16 6 7.3613 -1.6077 -3.6507 17 7 7.7642 -0.5368 -3.0041 18 14 8.5578 -2.5524 -4.7303 19 1 8.5155 -2.0067 -6.1108 20 1 9.9321 -2.4136 -4.1851 21 1 8.1769 -3.9875 -4.7533 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 1.6767 1.9564 0.8900 26 1 3.1299 1.4427 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6768 -1.7489 1.2492 29 1 3.1301 -0.7208 1.2494 30 1 1.6768 -0.2073 2.1392 31 1 0.8210 -2.2344 -3.8686 32 1 3.2047 -2.5303 -4.3839 33 1 4.6406 0.1205 0.2068 34 1 6.6950 -0.6811 -1.1809 35 1 8.6828 -0.2366 -3.0879 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821283180.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:20 Heat of formation + Delta-G solvation = 36.172628 kcal Electronic energy + Delta-G solvation = -17607.958547 eV Core-core repulsion = 14991.158720 eV Total energy + Delta-G solvation = -2616.799827 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.20156 -39.39039 -37.09705 -35.22196 -32.41355 -31.37627 -29.60343 -28.11588 -28.00554 -26.76303 -24.24794 -22.87677 -21.80169 -20.73410 -18.98859 -17.64697 -17.02918 -16.49558 -16.12698 -15.63551 -15.49371 -15.22277 -14.89305 -14.55410 -14.05202 -13.70725 -13.54704 -13.28898 -12.93167 -12.89082 -12.79753 -12.59611 -12.54681 -12.43326 -12.16831 -11.73009 -11.53079 -11.48933 -11.16469 -10.37323 -10.17272 -9.40694 -8.78467 -8.44912 -6.33711 0.29790 0.92736 1.33832 1.38755 1.49299 2.05819 2.17552 2.88406 2.93573 3.27511 3.53786 3.95141 4.18110 4.26989 4.35544 4.42683 4.54457 4.60028 4.87993 4.90771 4.91311 5.01136 5.03094 5.10271 5.12339 5.14051 5.15550 5.21960 5.37266 5.38055 5.53935 5.56733 5.70286 5.73217 6.12963 6.25250 6.49275 7.02809 7.43642 7.45997 8.36587 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.037511 B = 0.006851 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.269535 B = 4085.801321 C = 4603.569142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.014 4.014 3 C -0.134 4.134 4 C -0.134 4.134 5 C 0.179 3.821 6 N -0.526 5.526 7 C 0.063 3.937 8 C -0.186 4.186 9 C 0.038 3.962 10 C -0.178 4.178 11 C -0.241 4.241 12 C 0.050 3.950 13 N -0.302 5.302 14 C -0.378 4.378 15 H 0.104 0.896 16 C 0.005 3.995 17 N -0.879 5.879 18 Si 1.012 2.988 19 H -0.266 1.266 20 H -0.266 1.266 21 H -0.260 1.260 22 H 0.046 0.954 23 H 0.073 0.927 24 H 0.048 0.952 25 H 0.086 0.914 26 H 0.053 0.947 27 H 0.040 0.960 28 H 0.043 0.957 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.173 0.827 32 H 0.120 0.880 33 H 0.156 0.844 34 H 0.163 0.837 35 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.064 0.544 4.621 7.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.015 4.015 3 C -0.192 4.192 4 C -0.191 4.191 5 C 0.033 3.967 6 N -0.237 5.237 7 C -0.085 4.085 8 C -0.209 4.209 9 C -0.080 4.080 10 C -0.186 4.186 11 C -0.266 4.266 12 C -0.083 4.083 13 N 0.033 4.967 14 C -0.505 4.505 15 H 0.122 0.878 16 C -0.201 4.201 17 N -0.511 5.511 18 Si 0.832 3.168 19 H -0.191 1.191 20 H -0.190 1.190 21 H -0.183 1.183 22 H 0.065 0.935 23 H 0.092 0.908 24 H 0.067 0.933 25 H 0.105 0.895 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.190 0.810 32 H 0.138 0.862 33 H 0.174 0.826 34 H 0.180 0.820 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.531 0.569 4.460 7.929 hybrid contribution 1.885 -0.500 -1.132 2.255 sum -4.646 0.069 3.328 5.715 Atomic orbital electron populations 1.21565 0.92468 1.01667 1.01446 1.19481 0.96857 0.94806 0.90349 1.21871 1.01399 0.93863 1.02053 1.21864 1.01471 0.99599 0.96182 1.20981 0.86821 0.93862 0.95069 1.67419 1.38319 1.13638 1.04362 1.22408 0.92775 0.98159 0.95183 1.21028 0.93139 1.06205 1.00499 1.18991 0.85014 1.04492 0.99528 1.19900 0.94763 1.06301 0.97649 1.21539 0.89152 1.12764 1.03162 1.22298 0.99921 0.99305 0.86767 1.40347 1.02380 1.38104 1.15821 1.20175 0.93825 1.21463 1.15040 0.87835 1.26483 0.99347 0.95642 0.98589 1.69960 1.19460 1.20812 1.40883 0.84671 0.76367 0.78396 0.77376 1.19117 1.19043 1.18350 0.93504 0.90777 0.93323 0.89526 0.92782 0.94112 0.93828 0.92639 0.89592 0.80954 0.86188 0.82624 0.81958 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.14 7.69 71.98 0.55 -2.59 16 2 C -0.01 -0.44 0.80 -52.93 -0.04 -0.48 16 3 C -0.13 -3.90 8.28 71.98 0.60 -3.30 16 4 C -0.13 -3.76 8.28 71.98 0.60 -3.17 16 5 C 0.18 7.31 5.61 42.79 0.24 7.55 16 6 N -0.53 -21.50 9.02 -183.15 -1.65 -23.15 16 7 C 0.06 2.50 11.15 84.57 0.94 3.44 16 8 C -0.19 -8.35 10.06 22.42 0.23 -8.12 16 9 C 0.04 1.92 6.79 39.16 0.27 2.18 16 10 C -0.18 -8.24 5.57 -20.19 -0.11 -8.36 16 11 C -0.24 -10.83 8.72 23.54 0.21 -10.62 16 12 C 0.05 2.54 9.89 82.98 0.82 3.36 16 13 N -0.30 -16.29 2.91 -342.68 -1.00 -17.29 16 14 C -0.38 -20.18 9.96 84.00 0.84 -19.35 16 15 H 0.10 5.32 7.85 -2.91 -0.02 5.30 16 16 C 0.01 0.25 5.35 84.90 0.45 0.71 16 17 N -0.88 -45.40 10.84 21.65 0.23 -45.17 16 18 Si 1.01 38.43 29.57 68.60 2.03 40.46 16 19 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 20 H -0.27 -9.62 7.11 99.48 0.71 -8.91 16 21 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 22 H 0.05 1.37 8.06 -2.39 -0.02 1.35 16 23 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.05 1.40 8.06 -2.39 -0.02 1.38 16 25 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.05 1.71 5.83 -2.39 -0.01 1.70 16 27 H 0.04 1.24 8.14 -2.39 -0.02 1.23 16 28 H 0.04 1.27 8.14 -2.39 -0.02 1.26 16 29 H 0.05 1.69 5.83 -2.39 -0.01 1.68 16 30 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.17 5.43 8.06 -2.91 -0.02 5.40 16 32 H 0.12 5.03 8.06 -2.91 -0.02 5.01 16 33 H 0.16 5.92 6.31 -2.91 -0.02 5.90 16 34 H 0.16 8.38 6.34 -2.91 -0.02 8.36 16 35 H 0.29 13.53 8.31 -92.71 -0.77 12.75 16 Total: -1.00 -60.51 285.23 6.28 -54.23 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: 1.08 Total: 29.67 kcal Atomic # 6 Polarization: -44.34 SS G_CDS: 5.58 Total: -38.76 kcal Atomic # 7 Polarization: -83.19 SS G_CDS: -2.41 Total: -85.60 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.46 kcal Total: -60.51 6.28 -54.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821283180.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.403 kcal (2) G-P(sol) polarization free energy of solvation -60.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds