Wall clock time and date at job start Mon Mar 30 2020 06:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46734 * 2 1 4 4 C 1.50696 * 109.47021 * 119.99842 * 2 1 3 5 5 N 1.31708 * 119.93655 * 300.02430 * 4 2 1 6 6 C 1.32294 * 122.23805 * 180.02562 * 5 4 2 7 7 C 1.37722 * 121.49449 * 0.02562 * 6 5 4 8 8 C 1.39312 * 118.87924 * 359.94548 * 7 6 5 9 9 C 1.39305 * 119.93035 * 120.00517 * 4 2 1 10 10 C 1.46348 * 134.92552 * 359.67400 * 9 4 2 11 11 C 1.34276 * 106.95159 * 179.97438 * 10 9 4 12 12 N 1.36960 * 109.94893 * 0.34469 * 11 10 9 13 13 C 1.46493 * 125.04388 * 179.79574 * 12 11 10 14 14 C 1.50699 * 109.47405 * 264.97959 * 13 12 11 15 15 H 1.08003 * 119.99557 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00116 * 179.97438 * 14 13 12 17 17 N 1.31504 * 119.99907 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99783 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47062 * 60.00335 * 18 16 14 20 20 H 1.48504 * 109.47265 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47614 * 300.00273 * 18 16 14 22 22 H 1.09000 * 109.47270 * 299.99497 * 1 2 3 23 23 H 1.09000 * 109.47612 * 60.00221 * 1 2 3 24 24 H 1.09005 * 109.47087 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46815 * 240.00223 * 2 1 3 26 26 H 1.08996 * 109.47077 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47343 * 299.99938 * 3 2 1 28 28 H 1.08993 * 109.46995 * 59.99923 * 3 2 1 29 29 H 1.07998 * 119.25187 * 179.97438 * 6 5 4 30 30 H 1.08004 * 120.56127 * 180.02562 * 7 6 5 31 31 H 1.07999 * 126.52239 * 0.02562 * 10 9 4 32 32 H 1.07999 * 125.02621 * 180.14522 * 11 10 9 33 33 H 1.09000 * 109.47150 * 24.97813 * 13 12 11 34 34 H 1.08996 * 109.47355 * 144.97616 * 13 12 11 35 35 H 0.97005 * 119.99973 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7130 -0.2595 2.4261 6 6 2.1289 -0.8470 3.5361 7 6 2.9250 -1.9702 3.5008 8 6 3.2953 -2.4939 2.2641 9 6 2.8332 -1.8428 1.1010 10 6 3.3670 -2.6077 -0.0267 11 6 4.0859 -3.6171 0.4902 12 7 4.0490 -3.5645 1.8583 13 6 4.7177 -4.5105 2.7548 14 6 3.7473 -5.5896 3.1609 15 1 2.7336 -5.5721 2.7886 16 6 4.1535 -6.5991 4.0076 17 7 5.3879 -6.6206 4.4604 18 14 2.9504 -7.9362 4.5115 19 1 2.4721 -8.6531 3.3020 20 1 3.6283 -8.8953 5.4202 21 1 1.7941 -7.3230 5.2131 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.8382 -0.4359 4.4915 30 1 3.2557 -2.4379 4.4165 31 1 3.2127 -2.3994 -1.0752 32 1 4.6125 -4.3624 -0.0874 33 1 5.5669 -4.9604 2.2404 34 1 5.0681 -3.9841 3.6426 35 1 5.6737 -7.3306 5.0564 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821283931.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:18 Heat of formation + Delta-G solvation = 46.056276 kcal Electronic energy + Delta-G solvation = -17099.412451 eV Core-core repulsion = 14483.041211 eV Total energy + Delta-G solvation = -2616.371240 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 4.62 seconds Orbital eigenvalues (eV) -40.92493 -37.90119 -34.97081 -33.55365 -31.41997 -30.22808 -28.49454 -26.93024 -26.88736 -23.84029 -22.63136 -21.80584 -20.74222 -18.64345 -17.02150 -16.62172 -15.92546 -14.86851 -14.74797 -14.40688 -14.22626 -13.89825 -13.37131 -13.23022 -12.81978 -12.44200 -12.30376 -12.01814 -11.72059 -11.57978 -11.54976 -11.06005 -10.92147 -10.87390 -10.74287 -10.46051 -10.30185 -9.82369 -9.08935 -8.91931 -8.73139 -7.93907 -7.10448 -6.33751 -4.43893 1.51923 2.24562 3.17049 3.21442 3.23142 3.33015 3.75302 4.22467 4.47576 4.71479 4.98924 5.05307 5.22292 5.43639 5.44612 5.53358 5.63096 5.78958 5.81344 6.01923 6.06867 6.06970 6.08953 6.16324 6.29402 6.42843 6.44758 6.52332 6.72472 6.73709 6.89350 7.24030 7.30221 7.57628 7.78755 7.93179 8.03758 8.63464 8.68264 9.24317 10.72573 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.034288 B = 0.005787 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.408692 B = 4837.599947 C = 4996.929646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.038 4.038 3 C -0.137 4.137 4 C 0.178 3.822 5 N -0.509 5.509 6 C 0.079 3.921 7 C -0.166 4.166 8 C 0.134 3.866 9 C -0.165 4.165 10 C -0.221 4.221 11 C 0.067 3.933 12 N -0.447 5.447 13 C 0.234 3.766 14 C -0.544 4.544 15 H 0.064 0.936 16 C 0.067 3.933 17 N -0.890 5.890 18 Si 0.905 3.095 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.273 1.273 22 H 0.063 0.937 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.080 0.920 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.148 0.852 30 H 0.129 0.871 31 H 0.140 0.860 32 H 0.163 0.837 33 H 0.049 0.951 34 H 0.044 0.956 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.423 9.740 -7.070 12.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.057 4.057 3 C -0.194 4.194 4 C 0.033 3.967 5 N -0.220 5.220 6 C -0.070 4.070 7 C -0.188 4.188 8 C 0.017 3.983 9 C -0.173 4.173 10 C -0.247 4.247 11 C -0.062 4.062 12 N -0.124 5.124 13 C 0.116 3.884 14 C -0.582 4.582 15 H 0.082 0.918 16 C -0.137 4.137 17 N -0.528 5.528 18 Si 0.732 3.268 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.199 1.199 22 H 0.082 0.918 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.098 0.902 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.165 0.835 30 H 0.147 0.853 31 H 0.158 0.842 32 H 0.181 0.819 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.603 10.087 -6.558 12.881 hybrid contribution 0.126 -1.855 0.445 1.912 sum -4.476 8.232 -6.113 11.188 Atomic orbital electron populations 1.21751 0.94257 1.01721 1.01770 1.19947 0.96023 0.95781 0.93974 1.21746 1.00767 0.95137 1.01788 1.20467 0.92647 0.90831 0.92788 1.67267 1.24475 1.32525 0.97697 1.22045 0.95867 0.92885 0.96228 1.21055 1.02856 0.98885 0.96026 1.18297 0.95527 0.89864 0.94575 1.19937 1.04451 0.99077 0.93800 1.21374 1.07097 0.99097 0.97105 1.21921 1.01334 0.99643 0.83302 1.44776 1.39710 1.21921 1.06005 1.19739 0.93168 0.86742 0.88737 1.21305 0.97958 1.08888 1.30073 0.91803 1.24940 0.95560 0.97934 0.95226 1.69906 1.16424 1.33769 1.32670 0.86426 0.80802 0.80884 0.78685 1.19901 1.20869 1.19874 0.91793 0.92857 0.92995 0.90198 0.93055 0.92852 0.91805 0.83502 0.85302 0.84208 0.81920 0.93330 0.93755 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.10 37.16 0.34 -1.39 16 2 C -0.04 -0.53 3.18 -91.77 -0.29 -0.82 16 3 C -0.14 -1.68 9.10 37.16 0.34 -1.34 16 4 C 0.18 3.14 5.50 -82.25 -0.45 2.69 16 5 N -0.51 -9.19 9.83 -9.27 -0.09 -9.28 16 6 C 0.08 1.40 11.14 -17.54 -0.20 1.21 16 7 C -0.17 -3.29 10.09 -39.37 -0.40 -3.69 16 8 C 0.13 2.87 6.85 -84.05 -0.58 2.29 16 9 C -0.17 -3.20 6.17 -105.16 -0.65 -3.85 16 10 C -0.22 -3.83 10.56 -37.72 -0.40 -4.23 16 11 C 0.07 1.25 11.28 -16.66 -0.19 1.07 16 12 N -0.45 -9.77 2.75 -115.66 -0.32 -10.09 16 13 C 0.23 5.73 5.77 -5.20 -0.03 5.70 16 14 C -0.54 -14.54 9.39 -34.44 -0.32 -14.87 16 15 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 16 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 17 N -0.89 -24.61 13.29 55.43 0.74 -23.87 16 18 Si 0.91 20.74 29.54 -169.99 -5.02 15.72 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 22 H 0.06 0.85 8.04 -51.93 -0.42 0.43 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.08 1.04 7.31 -51.93 -0.38 0.66 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.83 8.05 -51.93 -0.42 0.41 16 29 H 0.15 2.13 8.06 -52.49 -0.42 1.71 16 30 H 0.13 2.53 8.06 -52.48 -0.42 2.10 16 31 H 0.14 1.96 7.85 -52.49 -0.41 1.55 16 32 H 0.16 2.57 8.06 -52.49 -0.42 2.15 16 33 H 0.05 1.20 8.12 -51.93 -0.42 0.78 16 34 H 0.04 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 300.67 15.07 4.53 4.53 Total: -1.00 -28.80 300.67 -8.06 -36.86 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -4.98 Total: 1.65 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -2.92 Total: -15.52 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.33 Total: -43.24 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.80 -8.06 -36.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821283931.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.921 kcal (2) G-P(sol) polarization free energy of solvation -28.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.62 seconds