Wall clock time and date at job start Mon Mar 30 2020 06:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46734 * 2 1 4 4 C 1.50696 * 109.47021 * 119.99842 * 2 1 3 5 5 N 1.31708 * 119.93655 * 300.02430 * 4 2 1 6 6 C 1.32294 * 122.23805 * 180.02562 * 5 4 2 7 7 C 1.37722 * 121.49449 * 0.02562 * 6 5 4 8 8 C 1.39312 * 118.87924 * 359.94548 * 7 6 5 9 9 C 1.39305 * 119.93035 * 120.00517 * 4 2 1 10 10 C 1.46348 * 134.92552 * 359.67400 * 9 4 2 11 11 C 1.34276 * 106.95159 * 179.97438 * 10 9 4 12 12 N 1.36960 * 109.94893 * 0.34469 * 11 10 9 13 13 C 1.46493 * 125.04388 * 179.79574 * 12 11 10 14 14 C 1.50699 * 109.47405 * 264.97959 * 13 12 11 15 15 H 1.08003 * 119.99557 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00116 * 179.97438 * 14 13 12 17 17 N 1.31504 * 119.99907 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99783 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47062 * 60.00335 * 18 16 14 20 20 H 1.48504 * 109.47265 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47614 * 300.00273 * 18 16 14 22 22 H 1.09000 * 109.47270 * 299.99497 * 1 2 3 23 23 H 1.09000 * 109.47612 * 60.00221 * 1 2 3 24 24 H 1.09005 * 109.47087 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46815 * 240.00223 * 2 1 3 26 26 H 1.08996 * 109.47077 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47343 * 299.99938 * 3 2 1 28 28 H 1.08993 * 109.46995 * 59.99923 * 3 2 1 29 29 H 1.07998 * 119.25187 * 179.97438 * 6 5 4 30 30 H 1.08004 * 120.56127 * 180.02562 * 7 6 5 31 31 H 1.07999 * 126.52239 * 0.02562 * 10 9 4 32 32 H 1.07999 * 125.02621 * 180.14522 * 11 10 9 33 33 H 1.09000 * 109.47150 * 24.97813 * 13 12 11 34 34 H 1.08996 * 109.47355 * 144.97616 * 13 12 11 35 35 H 0.97005 * 119.99973 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7130 -0.2595 2.4261 6 6 2.1289 -0.8470 3.5361 7 6 2.9250 -1.9702 3.5008 8 6 3.2953 -2.4939 2.2641 9 6 2.8332 -1.8428 1.1010 10 6 3.3670 -2.6077 -0.0267 11 6 4.0859 -3.6171 0.4902 12 7 4.0490 -3.5645 1.8583 13 6 4.7177 -4.5105 2.7548 14 6 3.7473 -5.5896 3.1609 15 1 2.7336 -5.5721 2.7886 16 6 4.1535 -6.5991 4.0076 17 7 5.3879 -6.6206 4.4604 18 14 2.9504 -7.9362 4.5115 19 1 2.4721 -8.6531 3.3020 20 1 3.6283 -8.8953 5.4202 21 1 1.7941 -7.3230 5.2131 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.8382 -0.4359 4.4915 30 1 3.2557 -2.4379 4.4165 31 1 3.2127 -2.3994 -1.0752 32 1 4.6125 -4.3624 -0.0874 33 1 5.5669 -4.9604 2.2404 34 1 5.0681 -3.9841 3.6426 35 1 5.6737 -7.3306 5.0564 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821283931.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:18 Heat of formation + Delta-G solvation = 31.458403 kcal Electronic energy + Delta-G solvation = -17100.045463 eV Core-core repulsion = 14483.041211 eV Total energy + Delta-G solvation = -2617.004251 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.41040 -39.33474 -36.15492 -35.51402 -33.11446 -31.70194 -29.95915 -28.69350 -27.89177 -25.53876 -24.18720 -23.27245 -22.08199 -20.04314 -18.89631 -18.34070 -17.35276 -16.63202 -16.20977 -15.89478 -15.68668 -15.21339 -14.71646 -14.65822 -14.33723 -13.94304 -13.68206 -13.48051 -13.31770 -12.93608 -12.82002 -12.74042 -12.71243 -12.30850 -11.97301 -11.87210 -11.73901 -11.60322 -10.79638 -10.57303 -10.35201 -9.49207 -8.64960 -8.33085 -6.56884 0.07804 0.73469 1.34225 1.35432 1.44319 1.85768 2.14607 2.32626 2.91748 3.03571 3.45775 3.74118 3.94018 4.02761 4.23933 4.34095 4.40014 4.47664 4.57938 4.66748 4.80891 4.87262 4.93432 4.96274 5.01710 5.08389 5.09060 5.23334 5.26042 5.47374 5.48081 5.52740 5.76427 5.83064 5.89700 6.30769 6.39581 6.61845 7.15864 7.24651 8.67423 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.034288 B = 0.005787 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.408692 B = 4837.599947 C = 4996.929646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.040 4.040 3 C -0.131 4.131 4 C 0.182 3.818 5 N -0.516 5.516 6 C 0.089 3.911 7 C -0.195 4.195 8 C 0.102 3.898 9 C -0.184 4.184 10 C -0.198 4.198 11 C 0.042 3.958 12 N -0.465 5.465 13 C 0.251 3.749 14 C -0.558 4.558 15 H 0.050 0.950 16 C 0.023 3.977 17 N -0.918 5.918 18 Si 0.968 3.032 19 H -0.267 1.267 20 H -0.273 1.273 21 H -0.273 1.273 22 H 0.053 0.947 23 H 0.083 0.917 24 H 0.041 0.959 25 H 0.095 0.905 26 H 0.044 0.956 27 H 0.082 0.918 28 H 0.053 0.947 29 H 0.178 0.822 30 H 0.117 0.883 31 H 0.180 0.820 32 H 0.186 0.814 33 H 0.040 0.960 34 H 0.020 0.980 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.827 10.475 -8.659 14.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.059 4.059 3 C -0.189 4.189 4 C 0.037 3.963 5 N -0.227 5.227 6 C -0.060 4.060 7 C -0.218 4.218 8 C -0.014 4.014 9 C -0.191 4.191 10 C -0.224 4.224 11 C -0.084 4.084 12 N -0.144 5.144 13 C 0.131 3.869 14 C -0.596 4.596 15 H 0.068 0.932 16 C -0.178 4.178 17 N -0.556 5.556 18 Si 0.792 3.208 19 H -0.192 1.192 20 H -0.198 1.198 21 H -0.199 1.199 22 H 0.072 0.928 23 H 0.102 0.898 24 H 0.060 0.940 25 H 0.113 0.887 26 H 0.063 0.937 27 H 0.101 0.899 28 H 0.072 0.928 29 H 0.195 0.805 30 H 0.136 0.864 31 H 0.198 0.802 32 H 0.203 0.797 33 H 0.058 0.942 34 H 0.038 0.962 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.009 10.838 -8.176 14.847 hybrid contribution 0.538 -1.972 0.912 2.239 sum -5.471 8.866 -7.264 12.700 Atomic orbital electron populations 1.21721 0.93118 1.01373 1.02808 1.20135 0.96889 0.96462 0.92430 1.21710 1.00327 0.94066 1.02791 1.21172 0.91073 0.90050 0.94052 1.67425 1.24709 1.32537 0.97982 1.22516 0.94189 0.91681 0.97603 1.21168 1.04784 1.00386 0.95499 1.18776 0.96278 0.90345 0.96042 1.20334 1.05165 0.99872 0.93778 1.21817 1.04862 0.97338 0.98370 1.22458 1.02590 1.01171 0.82183 1.44662 1.40722 1.22129 1.06906 1.19263 0.92698 0.86538 0.88384 1.21459 0.97678 1.09910 1.30557 0.93169 1.25735 0.97159 0.99930 0.94960 1.69993 1.17913 1.34606 1.33102 0.85453 0.78570 0.78242 0.78555 1.19192 1.19782 1.19850 0.92777 0.89835 0.94021 0.88714 0.93708 0.89891 0.92787 0.80515 0.86448 0.80249 0.79717 0.94233 0.96200 0.91753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 9.10 71.98 0.65 -2.29 16 2 C -0.04 -0.99 3.18 -11.54 -0.04 -1.03 16 3 C -0.13 -2.82 9.10 71.98 0.65 -2.16 16 4 C 0.18 6.15 5.50 42.83 0.24 6.38 16 5 N -0.52 -18.05 9.83 -183.25 -1.80 -19.85 16 6 C 0.09 3.14 11.14 84.50 0.94 4.09 16 7 C -0.20 -8.03 10.09 22.41 0.23 -7.81 16 8 C 0.10 4.44 6.85 39.28 0.27 4.71 16 9 C -0.18 -6.97 6.17 -20.21 -0.12 -7.10 16 10 C -0.20 -6.52 10.56 23.48 0.25 -6.28 16 11 C 0.04 1.57 11.28 82.99 0.94 2.51 16 12 N -0.47 -20.93 2.75 -519.84 -1.43 -22.36 16 13 C 0.25 12.83 5.77 85.63 0.49 13.33 16 14 C -0.56 -30.70 9.39 25.60 0.24 -30.46 16 15 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 16 C 0.02 1.27 5.46 84.66 0.46 1.73 16 17 N -0.92 -51.63 13.29 21.45 0.28 -51.35 16 18 Si 0.97 42.66 29.54 68.60 2.03 44.69 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 20 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 22 H 0.05 1.31 8.04 -2.39 -0.02 1.29 16 23 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 25 H 0.09 2.08 7.31 -2.39 -0.02 2.06 16 26 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.05 1.27 8.05 -2.39 -0.02 1.25 16 29 H 0.18 4.95 8.06 -2.91 -0.02 4.92 16 30 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 31 H 0.18 4.32 7.85 -2.91 -0.02 4.30 16 32 H 0.19 5.71 8.06 -2.91 -0.02 5.69 16 33 H 0.04 2.05 8.12 -2.39 -0.02 2.03 16 34 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.27 14.42 8.31 -92.70 -0.77 13.65 16 Total: -1.00 -62.77 300.67 5.34 -57.42 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 1.06 Total: 15.81 kcal Atomic # 6 Polarization: -29.57 SS G_CDS: 5.20 Total: -24.37 kcal Atomic # 7 Polarization: -90.61 SS G_CDS: -2.95 Total: -93.55 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -62.77 5.34 -57.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821283931.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.882 kcal (2) G-P(sol) polarization free energy of solvation -62.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds