Wall clock time and date at job start Mon Mar 30 2020 06:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50698 * 109.47184 * 180.02562 * 3 2 1 5 5 N 1.31711 * 119.93130 * 269.72482 * 4 3 2 6 6 C 1.32298 * 122.23433 * 179.74751 * 5 4 3 7 7 C 1.37731 * 121.49477 * 0.51054 * 6 5 4 8 8 C 1.39303 * 118.87856 * 359.76538 * 7 6 5 9 9 C 1.39289 * 119.93893 * 89.99405 * 4 3 2 10 10 C 1.46351 * 134.91673 * 359.97438 * 9 4 3 11 11 C 1.34274 * 106.95226 * 180.02562 * 10 9 4 12 12 N 1.36960 * 109.95144 * 359.97438 * 11 10 9 13 13 C 1.46498 * 125.04053 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46885 * 265.02241 * 13 12 11 15 15 H 1.07994 * 120.00552 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99863 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99996 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00234 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47073 * 60.00123 * 18 16 14 20 20 H 1.48497 * 109.47309 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47073 * 300.00067 * 18 16 14 22 22 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 25 25 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 26 26 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 27 27 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 28 28 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 29 29 H 1.07993 * 119.25183 * 180.27272 * 6 5 4 30 30 H 1.07999 * 120.55568 * 179.78116 * 7 6 5 31 31 H 1.08004 * 126.52745 * 0.04551 * 10 9 4 32 32 H 1.08002 * 125.02765 * 179.97438 * 11 10 9 33 33 H 1.09002 * 109.47426 * 25.02630 * 13 12 11 34 34 H 1.08999 * 109.46890 * 145.02630 * 13 12 11 35 35 H 0.96998 * 119.99849 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 7 4.2046 1.4479 1.1405 6 6 5.5266 1.4432 1.1931 7 6 6.2923 1.4429 0.0483 8 6 5.6523 1.4427 -1.1891 9 6 4.2416 1.4426 -1.2080 10 6 3.8587 1.4422 -2.6205 11 6 4.9959 1.4420 -3.3344 12 7 6.0762 1.4428 -2.4926 13 6 7.4769 1.4422 -2.9217 14 6 7.9932 0.0267 -2.9494 15 1 7.3429 -0.7908 -2.6754 16 6 9.2959 -0.2248 -3.3248 17 7 10.0880 0.7708 -3.6581 18 14 9.9357 -1.9794 -3.3600 19 1 9.1267 -2.7822 -4.3120 20 1 11.3555 -1.9799 -3.7948 21 1 9.8332 -2.5709 -2.0018 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 6.0164 1.4435 2.1556 30 1 7.3706 1.4426 0.1089 31 1 2.8528 1.4425 -3.0138 32 1 5.0507 1.4413 -4.4130 33 1 7.5517 1.8759 -3.9189 34 1 8.0710 2.0320 -2.2235 35 1 11.0045 0.5939 -3.9219 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821284225.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:28 Heat of formation + Delta-G solvation = 43.183690 kcal Electronic energy + Delta-G solvation = -16938.284115 eV Core-core repulsion = 14321.788310 eV Total energy + Delta-G solvation = -2616.495805 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 2.93 seconds Orbital eigenvalues (eV) -40.90553 -37.75829 -34.88678 -33.54916 -31.66056 -30.58090 -29.19079 -26.88268 -26.35334 -23.30689 -22.39320 -21.56134 -21.07823 -18.98688 -16.98311 -16.63557 -15.95711 -15.06805 -14.66221 -14.53941 -14.27020 -13.93138 -13.62969 -13.28714 -12.81746 -12.51651 -12.28604 -11.91519 -11.80430 -11.60536 -11.55737 -11.08142 -11.00141 -10.87564 -10.60144 -10.51980 -10.31623 -9.82203 -9.08608 -8.96215 -8.73178 -7.94090 -7.10898 -6.33848 -4.43989 1.50823 2.23928 3.16966 3.21377 3.23089 3.32980 3.75067 4.22354 4.44876 4.76033 4.98986 5.08958 5.20516 5.24617 5.39478 5.46836 5.55858 5.72910 5.88322 5.91558 5.95791 6.02214 6.08230 6.14680 6.23913 6.32957 6.43693 6.50614 6.72052 6.72801 6.89252 7.22986 7.29973 7.57569 7.78596 7.93013 8.03538 8.63377 8.67419 9.24221 10.72492 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.029411 B = 0.005638 C = 0.005534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.799158 B = 4964.775047 C = 5058.195867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.060 4.060 4 C 0.173 3.827 5 N -0.513 5.513 6 C 0.079 3.921 7 C -0.165 4.165 8 C 0.134 3.866 9 C -0.164 4.164 10 C -0.219 4.219 11 C 0.067 3.933 12 N -0.446 5.446 13 C 0.234 3.766 14 C -0.544 4.544 15 H 0.064 0.936 16 C 0.067 3.933 17 N -0.890 5.890 18 Si 0.905 3.095 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.273 1.273 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.148 0.852 30 H 0.129 0.871 31 H 0.140 0.860 32 H 0.163 0.837 33 H 0.049 0.951 34 H 0.045 0.955 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.321 1.113 3.850 12.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.098 4.098 4 C 0.027 3.973 5 N -0.224 5.224 6 C -0.071 4.071 7 C -0.188 4.188 8 C 0.017 3.983 9 C -0.172 4.172 10 C -0.246 4.246 11 C -0.062 4.062 12 N -0.124 5.124 13 C 0.116 3.884 14 C -0.582 4.582 15 H 0.082 0.918 16 C -0.137 4.137 17 N -0.528 5.528 18 Si 0.732 3.268 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.199 1.199 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.165 0.835 30 H 0.147 0.853 31 H 0.158 0.842 32 H 0.181 0.819 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.128 1.180 4.459 12.975 hybrid contribution 1.276 -0.967 -0.990 1.882 sum -10.852 0.213 3.469 11.395 Atomic orbital electron populations 1.21766 0.95885 1.01379 1.01631 1.21439 0.95232 0.96187 1.02550 1.20407 0.89274 0.97511 1.02650 1.20535 0.95450 0.94711 0.86617 1.67359 1.09733 1.16796 1.28538 1.22050 0.88989 0.98968 0.97055 1.21056 1.01105 1.06358 0.90231 1.18301 0.92929 1.00659 0.86429 1.19911 0.92861 1.09861 0.94554 1.21370 0.97488 1.15334 0.90363 1.21927 0.85803 1.02059 0.96441 1.44776 1.08670 1.56042 1.02878 1.19745 0.72813 0.98844 0.97009 1.21304 0.97282 0.91863 1.47767 0.91801 1.24944 0.96278 0.98123 0.94319 1.69909 1.07361 1.31328 1.44177 0.86425 0.77834 0.83644 0.78896 1.19907 1.20871 1.19867 0.92770 0.92934 0.92829 0.91765 0.91837 0.90688 0.90690 0.83480 0.85265 0.84206 0.81929 0.93319 0.93739 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 37.16 0.37 -1.09 16 2 C -0.12 -1.45 5.92 -26.73 -0.16 -1.61 16 3 C -0.06 -0.83 5.47 -27.88 -0.15 -0.98 16 4 C 0.17 3.06 6.08 -82.25 -0.50 2.56 16 5 N -0.51 -9.47 10.26 -9.27 -0.10 -9.56 16 6 C 0.08 1.41 11.14 -17.54 -0.20 1.22 16 7 C -0.16 -3.28 10.09 -39.37 -0.40 -3.68 16 8 C 0.13 2.85 6.85 -84.05 -0.58 2.28 16 9 C -0.16 -3.17 6.15 -105.16 -0.65 -3.81 16 10 C -0.22 -3.78 10.83 -37.72 -0.41 -4.19 16 11 C 0.07 1.24 11.28 -16.66 -0.19 1.06 16 12 N -0.45 -9.73 2.75 -115.66 -0.32 -10.05 16 13 C 0.23 5.71 5.77 -5.20 -0.03 5.68 16 14 C -0.54 -14.52 9.39 -34.44 -0.32 -14.84 16 15 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 16 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 17 N -0.89 -24.59 13.29 55.43 0.74 -23.86 16 18 Si 0.91 20.72 29.54 -169.99 -5.02 15.70 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 0.93 7.92 -51.93 -0.41 0.52 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.15 2.16 8.06 -52.49 -0.42 1.73 16 30 H 0.13 2.54 8.06 -52.49 -0.42 2.11 16 31 H 0.14 1.94 8.06 -52.48 -0.42 1.52 16 32 H 0.16 2.56 8.06 -52.49 -0.42 2.14 16 33 H 0.05 1.20 8.12 -51.93 -0.42 0.78 16 34 H 0.04 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 302.87 15.07 4.56 4.56 Total: -1.00 -28.90 302.87 -8.47 -37.36 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -5.03 Total: 1.54 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -3.30 Total: -15.71 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: 0.32 Total: -43.47 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.90 -8.47 -37.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821284225.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.546 kcal (2) G-P(sol) polarization free energy of solvation -28.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.93 seconds