Wall clock time and date at job start Mon Mar 30 2020 06:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50698 * 109.47184 * 180.02562 * 3 2 1 5 5 N 1.31711 * 119.93130 * 269.72482 * 4 3 2 6 6 C 1.32298 * 122.23433 * 179.74751 * 5 4 3 7 7 C 1.37731 * 121.49477 * 0.51054 * 6 5 4 8 8 C 1.39303 * 118.87856 * 359.76538 * 7 6 5 9 9 C 1.39289 * 119.93893 * 89.99405 * 4 3 2 10 10 C 1.46351 * 134.91673 * 359.97438 * 9 4 3 11 11 C 1.34274 * 106.95226 * 180.02562 * 10 9 4 12 12 N 1.36960 * 109.95144 * 359.97438 * 11 10 9 13 13 C 1.46498 * 125.04053 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46885 * 265.02241 * 13 12 11 15 15 H 1.07994 * 120.00552 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99863 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99996 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00234 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47073 * 60.00123 * 18 16 14 20 20 H 1.48497 * 109.47309 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47073 * 300.00067 * 18 16 14 22 22 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 25 25 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 26 26 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 27 27 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 28 28 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 29 29 H 1.07993 * 119.25183 * 180.27272 * 6 5 4 30 30 H 1.07999 * 120.55568 * 179.78116 * 7 6 5 31 31 H 1.08004 * 126.52745 * 0.04551 * 10 9 4 32 32 H 1.08002 * 125.02765 * 179.97438 * 11 10 9 33 33 H 1.09002 * 109.47426 * 25.02630 * 13 12 11 34 34 H 1.08999 * 109.46890 * 145.02630 * 13 12 11 35 35 H 0.96998 * 119.99849 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 7 4.2046 1.4479 1.1405 6 6 5.5266 1.4432 1.1931 7 6 6.2923 1.4429 0.0483 8 6 5.6523 1.4427 -1.1891 9 6 4.2416 1.4426 -1.2080 10 6 3.8587 1.4422 -2.6205 11 6 4.9959 1.4420 -3.3344 12 7 6.0762 1.4428 -2.4926 13 6 7.4769 1.4422 -2.9217 14 6 7.9932 0.0267 -2.9494 15 1 7.3429 -0.7908 -2.6754 16 6 9.2959 -0.2248 -3.3248 17 7 10.0880 0.7708 -3.6581 18 14 9.9357 -1.9794 -3.3600 19 1 9.1267 -2.7822 -4.3120 20 1 11.3555 -1.9799 -3.7948 21 1 9.8332 -2.5709 -2.0018 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 6.0164 1.4435 2.1556 30 1 7.3706 1.4426 0.1089 31 1 2.8528 1.4425 -3.0138 32 1 5.0507 1.4413 -4.4130 33 1 7.5517 1.8759 -3.9189 34 1 8.0710 2.0320 -2.2235 35 1 11.0045 0.5939 -3.9219 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821284225.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:27 Heat of formation + Delta-G solvation = 28.684187 kcal Electronic energy + Delta-G solvation = -16938.912861 eV Core-core repulsion = 14321.788310 eV Total energy + Delta-G solvation = -2617.124550 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.39590 -39.21626 -35.99871 -35.49181 -33.22617 -32.10103 -30.56746 -28.70431 -27.53791 -25.14730 -23.75212 -22.97349 -22.24423 -20.45491 -18.88693 -18.30865 -17.42855 -16.66610 -16.25515 -15.86712 -15.70185 -15.21300 -15.03891 -14.72423 -14.32358 -13.94045 -13.74325 -13.47517 -13.28725 -12.94146 -12.75972 -12.72269 -12.68579 -12.30282 -11.99322 -11.87991 -11.74395 -11.47745 -10.79389 -10.56550 -10.41662 -9.49531 -8.65134 -8.33045 -6.56613 0.06350 0.72355 1.34386 1.35448 1.44373 1.86295 2.14584 2.32710 2.91951 3.01262 3.48848 3.75407 3.95460 4.06792 4.23463 4.30622 4.34808 4.47690 4.57396 4.64353 4.78769 4.85429 4.88142 4.94619 4.98945 5.09456 5.09665 5.23030 5.30142 5.44617 5.48363 5.53826 5.76603 5.80875 5.88641 6.30717 6.39906 6.62066 7.16104 7.22987 8.67612 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.029411 B = 0.005638 C = 0.005534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.799158 B = 4964.775047 C = 5058.195867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C -0.058 4.058 4 C 0.176 3.824 5 N -0.524 5.524 6 C 0.088 3.912 7 C -0.194 4.194 8 C 0.101 3.899 9 C -0.181 4.181 10 C -0.196 4.196 11 C 0.042 3.958 12 N -0.464 5.464 13 C 0.250 3.750 14 C -0.558 4.558 15 H 0.050 0.950 16 C 0.024 3.976 17 N -0.918 5.918 18 Si 0.968 3.032 19 H -0.267 1.267 20 H -0.273 1.273 21 H -0.273 1.273 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.178 0.822 30 H 0.118 0.882 31 H 0.180 0.820 32 H 0.186 0.814 33 H 0.040 0.960 34 H 0.020 0.980 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.360 0.410 3.956 14.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.150 4.150 3 C -0.095 4.095 4 C 0.031 3.969 5 N -0.236 5.236 6 C -0.061 4.061 7 C -0.217 4.217 8 C -0.015 4.015 9 C -0.188 4.188 10 C -0.221 4.221 11 C -0.084 4.084 12 N -0.143 5.143 13 C 0.131 3.869 14 C -0.596 4.596 15 H 0.068 0.932 16 C -0.178 4.178 17 N -0.556 5.556 18 Si 0.791 3.209 19 H -0.192 1.192 20 H -0.198 1.198 21 H -0.199 1.199 22 H 0.084 0.916 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.112 0.888 28 H 0.103 0.897 29 H 0.195 0.805 30 H 0.136 0.864 31 H 0.198 0.802 32 H 0.203 0.797 33 H 0.058 0.942 34 H 0.038 0.962 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.201 0.484 4.560 14.923 hybrid contribution 1.838 -0.709 -0.953 2.189 sum -12.362 -0.225 3.607 12.880 Atomic orbital electron populations 1.21723 0.93445 1.02257 1.02656 1.21392 0.97269 0.94918 1.01410 1.20546 0.86247 0.98658 1.04096 1.21229 0.97481 0.92396 0.85842 1.67513 1.09722 1.17434 1.28886 1.22511 0.89040 0.96891 0.97617 1.21168 1.00913 1.08687 0.90941 1.18780 0.94533 1.01669 0.86548 1.20281 0.91995 1.10426 0.96145 1.21805 0.98710 1.12553 0.89043 1.22471 0.85369 1.03014 0.97572 1.44658 1.08101 1.57804 1.03754 1.19274 0.74600 0.97339 0.95728 1.21458 0.97626 0.92464 1.48016 0.93159 1.25734 0.96332 1.02009 0.93701 1.69996 1.07749 1.33225 1.44655 0.85458 0.77660 0.78898 0.78842 1.19199 1.19802 1.19850 0.91558 0.92196 0.92004 0.92760 0.93210 0.88796 0.89669 0.80502 0.86359 0.80229 0.79707 0.94187 0.96170 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.91 71.98 0.71 -1.60 16 2 C -0.11 -2.51 5.92 30.60 0.18 -2.33 16 3 C -0.06 -1.41 5.47 29.85 0.16 -1.25 16 4 C 0.18 5.96 6.08 42.83 0.26 6.22 16 5 N -0.52 -18.72 10.26 -183.25 -1.88 -20.60 16 6 C 0.09 3.14 11.14 84.50 0.94 4.08 16 7 C -0.19 -7.99 10.09 22.41 0.23 -7.76 16 8 C 0.10 4.39 6.85 39.28 0.27 4.66 16 9 C -0.18 -6.80 6.15 -20.22 -0.12 -6.93 16 10 C -0.20 -6.35 10.83 23.48 0.25 -6.09 16 11 C 0.04 1.55 11.28 82.99 0.94 2.49 16 12 N -0.46 -20.75 2.75 -519.83 -1.43 -22.18 16 13 C 0.25 12.75 5.77 85.63 0.49 13.25 16 14 C -0.56 -30.58 9.39 25.60 0.24 -30.34 16 15 H 0.05 2.84 7.81 -2.91 -0.02 2.81 16 16 C 0.02 1.27 5.46 84.65 0.46 1.73 16 17 N -0.92 -51.55 13.29 21.45 0.28 -51.26 16 18 Si 0.97 42.59 29.54 68.60 2.03 44.62 16 19 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 20 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.09 1.97 7.92 -2.39 -0.02 1.95 16 28 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.18 5.00 8.06 -2.91 -0.02 4.97 16 30 H 0.12 4.96 8.06 -2.91 -0.02 4.94 16 31 H 0.18 4.26 8.06 -2.91 -0.02 4.23 16 32 H 0.19 5.65 8.06 -2.91 -0.02 5.63 16 33 H 0.04 2.07 8.12 -2.39 -0.02 2.05 16 34 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -62.70 302.87 5.08 -57.62 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 1.06 Total: 15.67 kcal Atomic # 6 Polarization: -28.88 SS G_CDS: 5.02 Total: -23.87 kcal Atomic # 7 Polarization: -91.02 SS G_CDS: -3.02 Total: -94.05 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -62.70 5.08 -57.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821284225.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.304 kcal (2) G-P(sol) polarization free energy of solvation -62.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds