Wall clock time and date at job start Mon Mar 30 2020 06:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47008 * 2 1 4 4 C 1.50698 * 109.47014 * 119.99494 * 2 1 3 5 5 C 1.38237 * 120.00130 * 283.90816 * 4 2 1 6 6 C 1.38240 * 119.99970 * 179.97438 * 5 4 2 7 7 C 1.38232 * 120.00293 * 359.97438 * 6 5 4 8 8 C 1.38239 * 119.99493 * 0.28021 * 7 6 5 9 9 C 1.38231 * 120.00142 * 359.53026 * 8 7 6 10 10 N 1.46494 * 109.47485 * 239.99636 * 2 1 3 11 11 C 1.36935 * 120.00358 * 173.09170 * 10 2 1 12 12 H 1.07996 * 120.00220 * 16.50030 * 11 10 2 13 13 C 1.38810 * 120.00075 * 196.50321 * 11 10 2 14 14 N 1.31622 * 120.00092 * 14.23480 * 13 11 10 15 15 Si 1.86794 * 120.00152 * 194.23615 * 13 11 10 16 16 H 1.48493 * 109.47398 * 59.99869 * 15 13 11 17 17 H 1.48503 * 109.47310 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47163 * 299.99844 * 15 13 11 19 19 C 1.46502 * 119.99790 * 353.08540 * 10 2 1 20 20 C 1.47201 * 109.46832 * 83.81179 * 19 10 2 21 21 N 4.04813 * 68.36391 * 275.16638 * 2 1 3 22 22 H 1.09001 * 109.47387 * 300.00549 * 1 2 3 23 23 H 1.08998 * 109.47361 * 60.00271 * 1 2 3 24 24 H 1.09001 * 109.47418 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46884 * 180.02562 * 3 2 1 26 26 H 1.09008 * 109.47124 * 299.99362 * 3 2 1 27 27 H 1.08991 * 109.47892 * 59.99905 * 3 2 1 28 28 H 1.07998 * 119.99742 * 0.02562 * 5 4 2 29 29 H 1.08006 * 119.99463 * 180.02562 * 6 5 4 30 30 H 1.07994 * 120.00253 * 180.02562 * 7 6 5 31 31 H 1.07997 * 119.99434 * 179.72343 * 8 7 6 32 32 H 1.08007 * 119.99990 * 180.23223 * 9 8 7 33 33 H 0.96999 * 120.00270 * 179.97438 * 14 13 11 34 34 H 1.08996 * 109.47489 * 203.80804 * 19 10 2 35 35 H 1.09001 * 109.47406 * 323.81422 * 19 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.9914 -0.0776 2.4589 6 6 2.4517 -0.7294 3.5878 7 6 2.9524 -2.0140 3.4884 8 6 2.9981 -2.6447 2.2591 9 6 2.5342 -1.9944 1.1309 10 7 2.0184 -0.6906 -1.1960 11 6 3.3566 -0.6937 -1.4865 12 1 4.0752 -0.4309 -0.7244 13 6 3.7894 -1.0345 -2.7606 14 7 2.9306 -1.0810 -3.7570 15 14 5.5907 -1.4272 -3.0612 16 1 5.9909 -2.5867 -2.2243 17 1 5.7926 -1.7589 -4.4946 18 1 6.4206 -0.2487 -2.7036 19 6 1.0751 -1.3782 -2.0813 20 6 0.4894 -0.4091 -3.0218 21 7 0.0374 0.3388 -3.7476 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8901 27 1 1.6767 1.9564 0.8899 28 1 1.5990 0.9256 2.5368 29 1 2.4193 -0.2352 4.5476 30 1 3.3116 -2.5234 4.3703 31 1 3.3934 -3.6467 2.1807 32 1 2.5665 -2.4886 0.1711 33 1 3.2332 -1.3188 -4.6474 34 1 1.5996 -2.1541 -2.6389 35 1 0.2824 -1.8314 -1.4861 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001615962991.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:53 Heat of formation + Delta-G solvation = 68.421010 kcal Electronic energy + Delta-G solvation = -17914.450423 eV Core-core repulsion = 15299.048991 eV Total energy + Delta-G solvation = -2615.401432 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.61418 -38.35695 -36.42415 -34.82465 -32.19671 -31.36461 -30.20887 -29.44279 -27.27960 -25.40863 -23.32217 -22.90255 -20.27930 -19.10547 -18.29960 -17.28080 -16.91952 -15.89681 -15.70335 -15.33648 -15.13926 -14.73889 -14.14112 -14.00900 -13.93728 -13.67215 -13.33159 -13.04093 -12.89012 -12.82344 -12.78321 -12.63801 -12.54520 -12.30306 -11.98473 -11.87892 -11.47001 -11.41614 -11.29586 -10.57969 -9.52362 -9.31817 -8.94018 -7.84985 -5.25872 0.73498 0.81452 1.51205 1.54026 1.58772 2.29349 2.53265 2.61935 3.17087 3.33808 3.62466 3.92163 4.11155 4.29059 4.36848 4.41227 4.46816 4.56464 4.79036 4.82731 4.86686 4.96599 5.03210 5.08273 5.21290 5.29105 5.41107 5.44824 5.49986 5.53765 5.72273 5.84398 5.92810 6.12151 6.34399 6.42938 7.12793 7.34837 7.83328 8.22500 9.19428 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.019637 B = 0.010376 C = 0.007789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.532187 B = 2697.868413 C = 3594.089885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.220 3.780 3 C -0.136 4.136 4 C -0.085 4.085 5 C -0.127 4.127 6 C -0.131 4.131 7 C -0.134 4.134 8 C -0.138 4.138 9 C -0.103 4.103 10 N -0.579 5.579 11 C -0.228 4.228 12 H 0.075 0.925 13 C -0.046 4.046 14 N -0.936 5.936 15 Si 0.958 3.042 16 H -0.273 1.273 17 H -0.304 1.304 18 H -0.290 1.290 19 C 0.252 3.748 20 C 0.268 3.732 21 N -0.556 5.556 22 H 0.081 0.919 23 H 0.038 0.962 24 H 0.070 0.930 25 H 0.041 0.959 26 H 0.025 0.975 27 H 0.075 0.925 28 H 0.129 0.871 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.127 0.873 32 H 0.118 0.882 33 H 0.247 0.753 34 H 0.109 0.891 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.923 -2.956 15.092 15.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.133 3.867 3 C -0.194 4.194 4 C -0.087 4.087 5 C -0.146 4.146 6 C -0.148 4.148 7 C -0.152 4.152 8 C -0.156 4.156 9 C -0.122 4.122 10 N -0.299 5.299 11 C -0.358 4.358 12 H 0.092 0.908 13 C -0.240 4.240 14 N -0.584 5.584 15 Si 0.789 3.211 16 H -0.199 1.199 17 H -0.231 1.231 18 H -0.217 1.217 19 C 0.123 3.877 20 C -0.050 4.050 21 N -0.238 5.238 22 H 0.099 0.901 23 H 0.058 0.942 24 H 0.089 0.911 25 H 0.060 0.940 26 H 0.044 0.956 27 H 0.094 0.906 28 H 0.147 0.853 29 H 0.158 0.842 30 H 0.156 0.844 31 H 0.145 0.855 32 H 0.136 0.864 33 H 0.057 0.943 34 H 0.127 0.873 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.528 -1.900 13.876 14.232 hybrid contribution 1.444 -0.185 -0.854 1.688 sum -1.084 -2.085 13.022 13.233 Atomic orbital electron populations 1.22065 0.93475 1.02629 1.01792 1.18885 0.93134 0.90263 0.84416 1.22074 1.00729 0.96444 1.00200 1.20480 0.98545 0.94819 0.94822 1.21187 1.01039 1.00280 0.92068 1.21328 0.99428 0.95324 0.98761 1.21349 1.00454 0.95664 0.97703 1.21374 1.00666 1.00569 0.92996 1.21250 0.97172 0.94995 0.98744 1.44315 1.03011 1.59741 1.22839 1.19231 0.83161 1.39215 0.94194 0.90752 1.25362 1.00308 1.03001 0.95300 1.69995 1.34127 1.54496 0.99748 0.85463 0.81619 0.78178 0.75869 1.19915 1.23056 1.21659 1.18706 0.91587 0.89803 0.87633 1.31170 0.88046 0.93467 0.92286 1.80812 1.16398 1.13108 1.13481 0.90052 0.94249 0.91113 0.93995 0.95573 0.90635 0.85269 0.84179 0.84436 0.85542 0.86387 0.94276 0.87298 0.88821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.34 7.33 71.98 0.53 -3.81 16 2 C 0.22 7.77 0.94 2.86 0.00 7.77 16 3 C -0.14 -4.87 7.93 71.98 0.57 -4.30 16 4 C -0.08 -2.72 4.53 -19.87 -0.09 -2.81 16 5 C -0.13 -3.42 9.11 22.27 0.20 -3.22 16 6 C -0.13 -3.05 10.05 22.27 0.22 -2.83 16 7 C -0.13 -3.17 10.05 22.27 0.22 -2.95 16 8 C -0.14 -3.83 10.05 22.27 0.22 -3.60 16 9 C -0.10 -3.41 8.75 22.27 0.19 -3.22 16 10 N -0.58 -24.42 1.43 -669.45 -0.96 -25.38 16 11 C -0.23 -10.90 7.17 84.03 0.60 -10.30 16 12 H 0.07 3.60 7.44 -2.91 -0.02 3.58 16 13 C -0.05 -2.31 5.07 84.86 0.43 -1.88 16 14 N -0.94 -50.53 9.07 21.65 0.20 -50.33 16 15 Si 0.96 42.89 29.58 68.60 2.03 44.92 16 16 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 17 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 18 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 19 C 0.25 10.47 4.84 84.57 0.41 10.88 16 20 C 0.27 12.65 12.25 89.44 1.10 13.75 16 21 N -0.56 -28.54 18.54 20.01 0.37 -28.17 16 22 H 0.08 2.05 8.13 -2.39 -0.02 2.03 16 23 H 0.04 1.35 6.63 -2.39 -0.02 1.34 16 24 H 0.07 1.99 6.66 -2.39 -0.02 1.98 16 25 H 0.04 1.63 7.26 -2.39 -0.02 1.61 16 26 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 27 H 0.07 2.15 6.69 -2.39 -0.02 2.13 16 28 H 0.13 3.00 6.69 -2.91 -0.02 2.98 16 29 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 30 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 31 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 32 H 0.12 4.37 6.56 -2.91 -0.02 4.36 16 33 H 0.25 13.61 8.31 -92.71 -0.77 12.83 16 34 H 0.11 4.98 6.09 -2.39 -0.01 4.97 16 35 H 0.09 3.16 6.17 -2.39 -0.01 3.14 16 Total: -1.00 -59.80 286.94 7.34 -52.46 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 1.09 Total: 13.03 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: 4.62 Total: -6.52 kcal Atomic # 7 Polarization: -103.49 SS G_CDS: -0.39 Total: -103.88 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -59.80 7.34 -52.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615962991.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.881 kcal (2) G-P(sol) polarization free energy of solvation -59.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds