Wall clock time and date at job start Mon Mar 30 2020 05:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.28694 * 124.68194 * 2 1 4 4 C 1.32688 * 117.16633 * 179.97438 * 3 2 1 5 5 C 1.47645 * 123.05385 * 179.97438 * 4 3 2 6 6 C 1.39344 * 120.34461 * 173.81094 * 5 4 3 7 7 C 1.37948 * 119.96701 * 179.76551 * 6 5 4 8 8 C 1.39016 * 120.69496 * 0.51944 * 7 6 5 9 9 C 1.36363 * 120.71764 * 359.73901 * 8 7 6 10 10 C 1.40772 * 119.99785 * 359.97438 * 9 8 7 11 11 C 1.40801 * 120.34051 * 179.97438 * 10 9 8 12 12 H 1.08006 * 120.00119 * 145.74641 * 11 10 9 13 13 C 1.39984 * 120.00252 * 325.74285 * 11 10 9 14 14 N 1.30830 * 120.00227 * 167.47463 * 13 11 10 15 15 Si 1.86804 * 119.99683 * 347.46655 * 13 11 10 16 16 H 1.48499 * 109.46977 * 89.94409 * 15 13 11 17 17 H 1.48492 * 109.47164 * 209.94790 * 15 13 11 18 18 H 1.48505 * 109.47174 * 329.94712 * 15 13 11 19 19 C 1.35499 * 113.88149 * 359.97438 * 4 3 2 20 20 S 1.70891 * 124.68028 * 179.97438 * 2 1 3 21 21 H 1.08993 * 109.47326 * 90.00120 * 1 2 3 22 22 H 1.09000 * 109.46979 * 210.00365 * 1 2 3 23 23 H 1.09008 * 109.46751 * 330.00033 * 1 2 3 24 24 H 1.07991 * 120.01693 * 0.02649 * 6 5 4 25 25 H 1.08000 * 119.64745 * 180.23317 * 7 6 5 26 26 H 1.08000 * 119.63569 * 179.75827 * 8 7 6 27 27 H 1.08007 * 120.00108 * 180.02562 * 9 8 7 28 28 H 0.97005 * 120.00044 * 180.02562 * 14 13 11 29 29 H 1.08005 * 126.08125 * 180.02562 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2393 1.0583 0.0000 4 6 3.5547 0.8847 0.0005 5 6 4.5150 2.0063 0.0000 6 6 5.8809 1.7636 0.1303 7 6 6.7716 2.8169 0.1240 8 6 6.3213 4.1262 -0.0006 9 6 4.9905 4.3963 -0.1245 10 6 4.0560 3.3435 -0.1277 11 6 2.6801 3.6142 -0.2546 12 1 2.0412 2.9260 -0.7882 13 6 2.1400 4.7754 0.3108 14 7 0.9292 5.1557 -0.0070 15 14 3.1482 5.7817 1.5193 16 1 3.9321 6.8033 0.7797 17 1 2.2396 6.4556 2.4812 18 1 4.0744 4.8860 2.2576 19 6 3.9365 -0.4154 0.0016 20 16 2.4793 -1.4053 0.0006 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8901 0.5139 24 1 6.2424 0.7510 0.2319 25 1 7.8295 2.6226 0.2215 26 1 7.0334 4.9382 0.0004 27 1 4.6534 5.4179 -0.2210 28 1 0.5551 5.9605 0.3845 29 1 4.9533 -0.7797 0.0025 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260428388.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:21 Heat of formation + Delta-G solvation = 46.927401 kcal Electronic energy + Delta-G solvation = -14961.518659 eV Core-core repulsion = 12554.386308 eV Total energy + Delta-G solvation = -2407.132351 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 245.057 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.82768 -39.04214 -35.47889 -33.68505 -32.33652 -31.06886 -28.78533 -26.95392 -25.03343 -22.82077 -22.15480 -20.49539 -19.31331 -18.51867 -17.29419 -16.63685 -15.82624 -15.70658 -15.62217 -15.18701 -14.60615 -14.23854 -14.04291 -13.96739 -13.47954 -13.19843 -12.95201 -12.64794 -12.62343 -12.47817 -12.06582 -11.58496 -11.50572 -10.97513 -10.27364 -10.18241 -10.05728 -9.40217 -8.81290 -8.72823 -6.30347 -0.22906 0.64360 0.73091 0.86370 0.92767 1.24426 1.36769 1.45947 2.12847 2.26872 2.74854 3.38272 3.62565 4.18987 4.23537 4.40655 4.49819 4.52980 4.67532 4.68011 4.84563 4.84743 5.08313 5.13723 5.33286 5.38659 5.58208 5.87373 5.95034 6.08093 6.35184 6.59431 6.82701 6.92224 7.21564 8.26327 Molecular weight = 245.06amu Principal moments of inertia in cm(-1) A = 0.021195 B = 0.010541 C = 0.007356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.770301 B = 2655.732254 C = 3805.312170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.025 3.975 3 N -0.477 5.477 4 C 0.125 3.875 5 C -0.167 4.167 6 C -0.058 4.058 7 C -0.233 4.233 8 C -0.076 4.076 9 C -0.252 4.252 10 C 0.081 3.919 11 C -0.430 4.430 12 H 0.090 0.910 13 C 0.044 3.956 14 N -0.847 5.847 15 Si 0.958 3.042 16 H -0.255 1.255 17 H -0.282 1.282 18 H -0.263 1.263 19 C -0.292 4.292 20 S 0.136 5.864 21 H 0.092 0.908 22 H 0.109 0.891 23 H 0.069 0.931 24 H 0.132 0.868 25 H 0.137 0.863 26 H 0.128 0.872 27 H 0.098 0.902 28 H 0.289 0.711 29 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.537 -9.440 1.689 10.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.254 4.254 3 N -0.191 5.191 4 C -0.004 4.004 5 C -0.171 4.171 6 C -0.078 4.078 7 C -0.252 4.252 8 C -0.094 4.094 9 C -0.271 4.271 10 C 0.077 3.923 11 C -0.460 4.460 12 H 0.108 0.892 13 C -0.169 4.169 14 N -0.474 5.474 15 Si 0.783 3.217 16 H -0.181 1.181 17 H -0.209 1.209 18 H -0.187 1.187 19 C -0.430 4.430 20 S 0.390 5.610 21 H 0.110 0.890 22 H 0.128 0.872 23 H 0.088 0.912 24 H 0.150 0.850 25 H 0.154 0.846 26 H 0.146 0.854 27 H 0.116 0.884 28 H 0.100 0.900 29 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 2.760 -9.885 1.682 10.400 hybrid contribution 0.511 1.560 0.311 1.671 sum 3.271 -8.324 1.993 9.163 Atomic orbital electron populations 1.20523 0.83917 1.04425 1.04414 1.27771 1.03382 0.91159 1.03113 1.66649 1.05522 1.31215 1.15761 1.19099 0.88661 0.92693 0.99951 1.18423 0.92148 0.90927 1.15616 1.21054 0.91023 0.99338 0.96339 1.20794 0.99435 0.91951 1.13060 1.20868 0.94629 0.97585 0.96334 1.21002 0.94479 0.97834 1.13830 1.17992 0.93643 0.91639 0.88986 1.19792 0.93570 1.03858 1.28764 0.89221 1.26786 0.95950 0.96722 0.97488 1.69694 1.16792 1.22832 1.38044 0.85644 0.78397 0.78859 0.78822 1.18076 1.20887 1.18709 1.27195 1.03917 0.94800 1.17109 1.82974 0.96676 1.11576 1.69820 0.88956 0.87203 0.91244 0.85042 0.84552 0.85416 0.88393 0.90023 0.79012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.10 10.46 71.23 0.74 -1.35 15 2 C 0.02 0.92 7.35 88.57 0.65 1.57 15 3 N -0.48 -22.60 7.09 -180.73 -1.28 -23.88 15 4 C 0.12 5.65 6.58 40.87 0.27 5.92 15 5 C -0.17 -8.05 5.93 -19.60 -0.12 -8.17 15 6 C -0.06 -2.33 9.48 22.47 0.21 -2.12 15 7 C -0.23 -8.75 10.03 22.39 0.22 -8.53 15 8 C -0.08 -3.09 9.96 22.02 0.22 -2.87 15 9 C -0.25 -12.22 7.07 22.45 0.16 -12.06 15 10 C 0.08 4.33 5.07 -21.11 -0.11 4.23 15 11 C -0.43 -24.95 8.21 23.32 0.19 -24.76 15 12 H 0.09 5.64 6.01 -2.91 -0.02 5.63 15 13 C 0.04 2.46 5.46 85.27 0.47 2.92 15 14 N -0.85 -47.80 13.93 21.83 0.30 -47.50 15 15 Si 0.96 44.89 24.51 68.60 1.68 46.57 15 16 H -0.26 -11.19 6.57 99.48 0.65 -10.53 15 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 15 18 H -0.26 -12.79 6.92 99.48 0.69 -12.10 15 19 C -0.29 -10.32 10.65 67.19 0.72 -9.60 15 20 S 0.14 3.98 23.16 -56.49 -1.31 2.67 15 21 H 0.09 2.42 8.14 -2.39 -0.02 2.40 15 22 H 0.11 2.27 8.14 -2.39 -0.02 2.25 15 23 H 0.07 2.30 8.14 -2.38 -0.02 2.28 15 24 H 0.13 4.23 6.72 -2.91 -0.02 4.21 15 25 H 0.14 4.03 8.06 -2.91 -0.02 4.01 15 26 H 0.13 4.28 8.06 -2.91 -0.02 4.25 15 27 H 0.10 4.75 4.78 -2.91 -0.01 4.73 15 28 H 0.29 14.79 8.30 -92.70 -0.77 14.02 15 29 H 0.19 5.51 6.97 -2.91 -0.02 5.49 15 Total: -1.00 -66.23 258.84 4.13 -62.10 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 1.10 Total: 14.86 kcal Atomic # 6 Polarization: -58.45 SS G_CDS: 3.63 Total: -54.82 kcal Atomic # 7 Polarization: -70.40 SS G_CDS: -0.98 Total: -71.38 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.68 Total: 46.57 kcal Atomic # 16 Polarization: 3.98 SS G_CDS: -1.31 Total: 2.67 kcal Total: -66.23 4.13 -62.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260428388.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.029 kcal (2) G-P(sol) polarization free energy of solvation -66.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds