Wall clock time and date at job start Mon Mar 30 2020 05:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 N 1.28804 * 124.75297 * 2 1 4 4 C 1.32521 * 117.12230 * 180.02562 * 3 2 1 5 5 C 1.48359 * 122.95928 * 180.02562 * 4 3 2 6 6 C 1.39769 * 120.00163 * 185.03064 * 5 4 3 7 7 C 1.38380 * 120.37991 * 179.97438 * 6 5 4 8 8 C 1.37726 * 120.37616 * 359.97438 * 7 6 5 9 9 C 1.40772 * 119.99737 * 359.97438 * 8 7 6 10 10 C 1.41425 * 120.18604 * 180.02562 * 9 8 7 11 11 H 1.07994 * 120.00054 * 24.35843 * 10 9 8 12 12 C 1.39926 * 119.99483 * 204.36519 * 10 9 8 13 13 N 1.30832 * 120.00242 * 17.74609 * 12 10 9 14 14 Si 1.86796 * 119.99722 * 197.73913 * 12 10 9 15 15 H 1.48508 * 109.47070 * 60.00194 * 14 12 10 16 16 H 1.48498 * 109.47327 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47445 * 300.00580 * 14 12 10 18 18 C 1.38752 * 120.00490 * 4.74651 * 5 4 3 19 19 C 1.34831 * 114.07768 * 0.26943 * 4 3 2 20 20 S 1.70914 * 124.75814 * 180.02562 * 2 1 3 21 21 H 1.09001 * 109.47479 * 90.00014 * 1 2 3 22 22 H 1.09002 * 109.47214 * 210.00111 * 1 2 3 23 23 H 1.09001 * 109.47613 * 329.99624 * 1 2 3 24 24 H 1.08006 * 119.81373 * 359.97010 * 6 5 4 25 25 H 1.07997 * 119.81453 * 179.97438 * 7 6 5 26 26 H 1.08000 * 120.00481 * 180.02562 * 8 7 6 27 27 H 0.96995 * 119.99700 * 180.02562 * 13 12 10 28 28 H 1.08000 * 120.18614 * 0.02562 * 18 5 4 29 29 H 1.08001 * 126.06524 * 179.70692 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2411 1.0583 0.0000 4 6 3.5546 0.8823 -0.0005 5 6 4.5199 2.0089 0.0000 6 6 5.8902 1.7552 -0.1068 7 6 6.7974 2.8001 -0.1077 8 6 6.3603 4.1020 -0.0039 9 6 4.9836 4.3758 0.1033 10 6 4.5303 5.7112 0.2095 11 1 5.1367 6.5193 -0.1720 12 6 3.2961 5.9854 0.8092 13 7 2.7245 5.0875 1.5699 14 14 2.4647 7.6336 0.5236 15 1 2.2061 7.8127 -0.9278 16 1 1.1785 7.6742 1.2647 17 1 3.3488 8.7244 1.0071 18 6 4.0620 3.3149 0.1004 19 6 3.9363 -0.4108 -0.0068 20 16 2.4813 -1.4042 -0.0006 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5139 23 1 -0.3634 0.8899 0.5139 24 1 6.2431 0.7378 -0.1890 25 1 7.8542 2.5936 -0.1902 26 1 7.0735 4.9130 -0.0056 27 1 1.8688 5.2775 1.9852 28 1 3.0036 3.5147 0.1789 29 1 4.9536 -0.7734 -0.0128 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260681162.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:23 Heat of formation + Delta-G solvation = 52.381402 kcal Electronic energy + Delta-G solvation = -14552.941882 eV Core-core repulsion = 12146.046034 eV Total energy + Delta-G solvation = -2406.895848 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 245.057 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.40437 -37.17329 -33.75045 -32.26337 -29.77960 -29.22560 -27.63194 -25.13386 -23.51666 -21.01939 -20.57714 -19.10574 -17.40259 -16.79612 -15.39789 -14.92882 -14.58383 -14.33722 -13.89325 -13.27284 -13.02261 -12.72366 -12.54723 -12.24668 -11.92597 -11.60298 -11.25303 -11.10026 -11.03779 -10.65964 -10.46685 -9.63262 -9.56816 -9.21412 -9.10352 -9.00619 -8.69742 -7.41985 -7.08824 -6.71440 -4.33876 1.07200 1.75280 2.11930 2.51310 2.89672 3.09070 3.11444 3.22271 3.77649 3.95742 4.45551 4.69392 5.29684 5.54189 5.59880 5.68479 5.71512 5.95010 6.01695 6.25319 6.42463 6.55396 6.89220 7.08255 7.20353 7.33260 7.54425 7.83416 7.95084 8.06685 8.26053 8.36344 8.61863 8.89526 8.94610 10.21506 Molecular weight = 245.06amu Principal moments of inertia in cm(-1) A = 0.022856 B = 0.007585 C = 0.005806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.767347 B = 3690.470928 C = 4821.260385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.049 3.951 3 N -0.450 5.450 4 C 0.146 3.854 5 C -0.032 4.032 6 C -0.222 4.222 7 C -0.096 4.096 8 C -0.220 4.220 9 C 0.101 3.899 10 C -0.464 4.464 11 H 0.078 0.922 12 C 0.076 3.924 13 N -0.786 5.786 14 Si 0.908 3.092 15 H -0.263 1.263 16 H -0.278 1.278 17 H -0.266 1.266 18 C -0.115 4.115 19 C -0.267 4.267 20 S 0.065 5.935 21 H 0.082 0.918 22 H 0.076 0.924 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.282 0.718 28 H 0.134 0.866 29 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.861 -8.791 -1.875 9.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.231 4.231 3 N -0.165 5.165 4 C 0.017 3.983 5 C -0.035 4.035 6 C -0.243 4.243 7 C -0.115 4.115 8 C -0.240 4.240 9 C 0.099 3.901 10 C -0.493 4.493 11 H 0.097 0.903 12 C -0.143 4.143 13 N -0.411 5.411 14 Si 0.732 3.268 15 H -0.188 1.188 16 H -0.203 1.203 17 H -0.190 1.190 18 C -0.135 4.135 19 C -0.404 4.404 20 S 0.318 5.682 21 H 0.101 0.899 22 H 0.095 0.905 23 H 0.107 0.893 24 H 0.108 0.892 25 H 0.110 0.890 26 H 0.112 0.888 27 H 0.093 0.907 28 H 0.152 0.848 29 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -4.562 -9.402 -1.703 10.589 hybrid contribution 0.321 1.334 0.020 1.372 sum -4.241 -8.069 -1.684 9.270 Atomic orbital electron populations 1.20400 0.85655 1.03903 1.03507 1.26944 1.01537 0.90594 1.04029 1.66216 1.04927 1.30641 1.14666 1.19267 0.88553 0.92645 0.97847 1.17835 0.90325 0.90650 1.04673 1.20260 0.91852 0.96924 1.15225 1.20395 0.96860 0.93234 1.00975 1.21064 0.95378 0.94855 1.12675 1.17602 0.90546 0.93430 0.88520 1.19528 1.02426 0.93125 1.34200 0.90345 1.25912 0.96821 0.98802 0.92752 1.69811 1.15694 1.35028 1.20551 0.86376 0.78669 0.82014 0.79715 1.18802 1.20315 1.19047 1.21616 1.00821 0.89719 1.01379 1.26835 1.01913 0.95346 1.16338 1.83522 0.99312 1.14136 1.71263 0.89948 0.90515 0.89287 0.89247 0.89034 0.88839 0.90698 0.84814 0.80876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.46 36.00 0.38 -0.53 15 2 C 0.05 0.83 7.36 -13.55 -0.10 0.73 15 3 N -0.45 -9.68 9.91 -8.43 -0.08 -9.76 15 4 C 0.15 3.20 6.64 -84.61 -0.56 2.64 15 5 C -0.03 -0.79 5.87 -104.97 -0.62 -1.40 15 6 C -0.22 -5.06 9.49 -38.96 -0.37 -5.42 15 7 C -0.10 -2.19 10.01 -39.72 -0.40 -2.58 15 8 C -0.22 -5.46 9.79 -38.81 -0.38 -5.84 15 9 C 0.10 2.77 5.57 -106.86 -0.60 2.17 15 10 C -0.46 -12.50 9.05 -37.74 -0.34 -12.84 15 11 H 0.08 2.01 7.91 -52.49 -0.41 1.60 15 12 C 0.08 1.94 5.14 -17.35 -0.09 1.85 15 13 N -0.79 -20.94 10.95 55.55 0.61 -20.33 15 14 Si 0.91 19.01 29.59 -169.99 -5.03 13.98 15 15 H -0.26 -5.48 7.11 56.52 0.40 -5.08 15 16 H -0.28 -5.67 7.11 56.52 0.40 -5.27 15 17 H -0.27 -5.45 7.11 56.52 0.40 -5.05 15 18 C -0.12 -3.13 8.28 -38.53 -0.32 -3.45 15 19 C -0.27 -4.83 10.62 29.52 0.31 -4.52 15 20 S 0.06 0.95 23.16 -107.50 -2.49 -1.54 15 21 H 0.08 0.87 8.14 -51.93 -0.42 0.45 15 22 H 0.08 0.72 8.14 -51.93 -0.42 0.30 15 23 H 0.09 1.13 8.14 -51.93 -0.42 0.71 15 24 H 0.09 1.77 6.66 -52.48 -0.35 1.42 15 25 H 0.09 1.77 8.06 -52.49 -0.42 1.35 15 26 H 0.09 2.16 8.06 -52.49 -0.42 1.74 15 27 H 0.28 6.89 8.30 -40.82 -0.34 6.55 15 28 H 0.13 3.83 5.80 -52.49 -0.30 3.52 15 29 H 0.17 2.78 6.91 -52.49 -0.36 2.42 15 LS Contribution 269.32 15.07 4.06 4.06 Total: -1.00 -29.45 269.32 -8.70 -38.14 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -2.68 Total: 4.65 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: -3.08 Total: -29.19 kcal Atomic # 7 Polarization: -30.62 SS G_CDS: 0.52 Total: -30.09 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.49 Total: -1.54 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.45 -8.70 -38.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260681162.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.522 kcal (2) G-P(sol) polarization free energy of solvation -29.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds