Wall clock time and date at job start Mon Mar 30 2020 05:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 N 1.28804 * 124.75297 * 2 1 4 4 C 1.32521 * 117.12230 * 180.02562 * 3 2 1 5 5 C 1.48359 * 122.95928 * 180.02562 * 4 3 2 6 6 C 1.39769 * 120.00163 * 185.03064 * 5 4 3 7 7 C 1.38380 * 120.37991 * 179.97438 * 6 5 4 8 8 C 1.37726 * 120.37616 * 359.97438 * 7 6 5 9 9 C 1.40772 * 119.99737 * 359.97438 * 8 7 6 10 10 C 1.41425 * 120.18604 * 180.02562 * 9 8 7 11 11 H 1.07994 * 120.00054 * 24.35843 * 10 9 8 12 12 C 1.39926 * 119.99483 * 204.36519 * 10 9 8 13 13 N 1.30832 * 120.00242 * 17.74609 * 12 10 9 14 14 Si 1.86796 * 119.99722 * 197.73913 * 12 10 9 15 15 H 1.48508 * 109.47070 * 60.00194 * 14 12 10 16 16 H 1.48498 * 109.47327 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47445 * 300.00580 * 14 12 10 18 18 C 1.38752 * 120.00490 * 4.74651 * 5 4 3 19 19 C 1.34831 * 114.07768 * 0.26943 * 4 3 2 20 20 S 1.70914 * 124.75814 * 180.02562 * 2 1 3 21 21 H 1.09001 * 109.47479 * 90.00014 * 1 2 3 22 22 H 1.09002 * 109.47214 * 210.00111 * 1 2 3 23 23 H 1.09001 * 109.47613 * 329.99624 * 1 2 3 24 24 H 1.08006 * 119.81373 * 359.97010 * 6 5 4 25 25 H 1.07997 * 119.81453 * 179.97438 * 7 6 5 26 26 H 1.08000 * 120.00481 * 180.02562 * 8 7 6 27 27 H 0.96995 * 119.99700 * 180.02562 * 13 12 10 28 28 H 1.08000 * 120.18614 * 0.02562 * 18 5 4 29 29 H 1.08001 * 126.06524 * 179.70692 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2411 1.0583 0.0000 4 6 3.5546 0.8823 -0.0005 5 6 4.5199 2.0089 0.0000 6 6 5.8902 1.7552 -0.1068 7 6 6.7974 2.8001 -0.1077 8 6 6.3603 4.1020 -0.0039 9 6 4.9836 4.3758 0.1033 10 6 4.5303 5.7112 0.2095 11 1 5.1367 6.5193 -0.1720 12 6 3.2961 5.9854 0.8092 13 7 2.7245 5.0875 1.5699 14 14 2.4647 7.6336 0.5236 15 1 2.2061 7.8127 -0.9278 16 1 1.1785 7.6742 1.2647 17 1 3.3488 8.7244 1.0071 18 6 4.0620 3.3149 0.1004 19 6 3.9363 -0.4108 -0.0068 20 16 2.4813 -1.4042 -0.0006 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5139 23 1 -0.3634 0.8899 0.5139 24 1 6.2431 0.7378 -0.1890 25 1 7.8542 2.5936 -0.1902 26 1 7.0735 4.9130 -0.0056 27 1 1.8688 5.2775 1.9852 28 1 3.0036 3.5147 0.1789 29 1 4.9536 -0.7734 -0.0128 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260681162.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:23 Heat of formation + Delta-G solvation = 35.527707 kcal Electronic energy + Delta-G solvation = -14553.672713 eV Core-core repulsion = 12146.046034 eV Total energy + Delta-G solvation = -2407.626679 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 245.057 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.88942 -38.97366 -35.62311 -33.69568 -31.55505 -30.91859 -29.06567 -27.03821 -24.98207 -22.84648 -22.21533 -20.62616 -19.12896 -18.42056 -17.14032 -16.62933 -15.99721 -15.91336 -15.43257 -15.04076 -14.43219 -14.34620 -13.89064 -13.77257 -13.37821 -13.02815 -12.93512 -12.78432 -12.62000 -12.49189 -12.15672 -11.46688 -11.40636 -11.06733 -10.48489 -10.34178 -10.23422 -9.34829 -8.81197 -8.58372 -6.35104 -0.31773 0.48638 0.74914 0.79864 1.07047 1.35685 1.47551 1.51288 2.13004 2.20484 2.81248 3.21219 3.77202 4.05406 4.25669 4.43528 4.50029 4.64480 4.66504 4.71203 4.85309 5.04473 5.13791 5.21138 5.34291 5.44062 5.65695 5.95816 6.07530 6.16810 6.35584 6.63484 6.92584 6.96940 7.02433 8.33678 Molecular weight = 245.06amu Principal moments of inertia in cm(-1) A = 0.022856 B = 0.007585 C = 0.005806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.767347 B = 3690.470928 C = 4821.260385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.032 3.968 3 N -0.506 5.506 4 C 0.100 3.900 5 C -0.038 4.038 6 C -0.220 4.220 7 C -0.094 4.094 8 C -0.238 4.238 9 C 0.070 3.930 10 C -0.504 4.504 11 H 0.078 0.922 12 C 0.033 3.967 13 N -0.822 5.822 14 Si 0.982 3.018 15 H -0.261 1.261 16 H -0.268 1.268 17 H -0.256 1.256 18 C -0.153 4.153 19 C -0.266 4.266 20 S 0.169 5.831 21 H 0.101 0.899 22 H 0.111 0.889 23 H 0.077 0.923 24 H 0.126 0.874 25 H 0.131 0.869 26 H 0.102 0.898 27 H 0.286 0.714 28 H 0.108 0.892 29 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.066 -11.001 -2.192 11.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.247 4.247 3 N -0.222 5.222 4 C -0.029 4.029 5 C -0.041 4.041 6 C -0.240 4.240 7 C -0.112 4.112 8 C -0.258 4.258 9 C 0.068 3.932 10 C -0.533 4.533 11 H 0.096 0.904 12 C -0.182 4.182 13 N -0.448 5.448 14 Si 0.802 3.198 15 H -0.186 1.186 16 H -0.192 1.192 17 H -0.180 1.180 18 C -0.173 4.173 19 C -0.404 4.404 20 S 0.423 5.577 21 H 0.119 0.881 22 H 0.129 0.871 23 H 0.096 0.904 24 H 0.144 0.856 25 H 0.149 0.851 26 H 0.120 0.880 27 H 0.096 0.904 28 H 0.126 0.874 29 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -4.762 -11.639 -2.021 12.737 hybrid contribution 0.404 1.718 0.102 1.767 sum -4.359 -9.922 -1.919 11.005 Atomic orbital electron populations 1.20623 0.82831 1.05055 1.05048 1.27711 1.03508 0.91092 1.02350 1.66187 1.05343 1.33467 1.17196 1.19144 0.88870 0.93216 1.01671 1.18259 0.92178 0.90915 1.02724 1.20710 0.91066 0.98757 1.13421 1.20830 0.98986 0.92199 0.99177 1.21306 0.94692 0.96499 1.13272 1.17993 0.91909 0.93960 0.89368 1.19810 1.04072 0.93368 1.36043 0.90354 1.26797 0.96871 1.02722 0.91780 1.69907 1.16158 1.37203 1.21519 0.85263 0.77799 0.77142 0.79559 1.18592 1.19239 1.17970 1.21467 0.99684 0.91299 1.04865 1.27228 1.04787 0.95072 1.13355 1.83100 0.95455 1.10498 1.68622 0.88087 0.87061 0.90422 0.85645 0.85072 0.87986 0.90361 0.87410 0.78828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.68 10.46 71.23 0.75 -0.94 15 2 C 0.03 1.04 7.36 88.55 0.65 1.69 15 3 N -0.51 -22.08 9.91 -180.57 -1.79 -23.87 15 4 C 0.10 4.41 6.64 40.95 0.27 4.68 15 5 C -0.04 -1.92 5.87 -20.09 -0.12 -2.03 15 6 C -0.22 -9.75 9.49 22.67 0.22 -9.54 15 7 C -0.09 -4.17 10.01 22.18 0.22 -3.95 15 8 C -0.24 -12.10 9.79 22.77 0.22 -11.87 15 9 C 0.07 4.01 5.57 -21.32 -0.12 3.89 15 10 C -0.50 -28.64 9.05 23.46 0.21 -28.43 15 11 H 0.08 4.24 7.91 -2.91 -0.02 4.22 15 12 C 0.03 1.78 5.14 85.25 0.44 2.22 15 13 N -0.82 -46.24 10.95 21.82 0.24 -46.00 15 14 Si 0.98 40.29 29.59 68.60 2.03 42.32 15 15 H -0.26 -10.53 7.11 99.48 0.71 -9.82 15 16 H -0.27 -10.41 7.11 99.48 0.71 -9.70 15 17 H -0.26 -9.97 7.11 99.48 0.71 -9.26 15 18 C -0.15 -8.78 8.28 22.95 0.19 -8.59 15 19 C -0.27 -9.01 10.62 67.04 0.71 -8.30 15 20 S 0.17 4.37 23.16 -56.49 -1.31 3.07 15 21 H 0.10 1.89 8.14 -2.39 -0.02 1.87 15 22 H 0.11 1.67 8.14 -2.39 -0.02 1.65 15 23 H 0.08 1.93 8.14 -2.39 -0.02 1.91 15 24 H 0.13 4.56 6.66 -2.91 -0.02 4.54 15 25 H 0.13 4.69 8.06 -2.91 -0.02 4.67 15 26 H 0.10 4.83 8.06 -2.91 -0.02 4.81 15 27 H 0.29 14.69 8.30 -92.71 -0.77 13.92 15 28 H 0.11 6.65 5.80 -2.91 -0.02 6.63 15 29 H 0.19 5.51 6.91 -2.91 -0.02 5.49 15 Total: -1.00 -68.70 269.32 3.98 -64.72 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 1.17 Total: 20.91 kcal Atomic # 6 Polarization: -64.80 SS G_CDS: 3.64 Total: -61.16 kcal Atomic # 7 Polarization: -68.31 SS G_CDS: -1.55 Total: -69.87 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Atomic # 16 Polarization: 4.37 SS G_CDS: -1.31 Total: 3.07 kcal Total: -68.70 3.98 -64.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260681162.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.247 kcal (2) G-P(sol) polarization free energy of solvation -68.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds