Wall clock time and date at job start Mon Mar 30 2020 06:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30892 * 1 3 3 Si 1.86793 * 120.00276 * 2 1 4 4 H 1.48498 * 109.47003 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47234 * 299.99698 * 3 2 1 6 6 H 1.48498 * 109.47402 * 59.99296 * 3 2 1 7 7 C 1.39894 * 119.99319 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99400 * 197.93385 * 7 2 1 9 9 C 1.41212 * 120.00211 * 17.94478 * 7 2 1 10 10 C 1.40836 * 120.17945 * 204.53798 * 9 7 2 11 11 C 1.36435 * 119.81172 * 180.02562 * 10 9 7 12 12 C 1.39305 * 120.18781 * 359.97438 * 11 10 9 13 13 O 1.35672 * 119.81816 * 179.97438 * 12 11 10 14 14 C 1.42905 * 116.99906 * 180.02562 * 13 12 11 15 15 C 1.53008 * 109.46961 * 180.02562 * 14 13 12 16 16 F 1.39897 * 109.47105 * 60.00150 * 15 14 13 17 17 F 1.39900 * 109.46684 * 180.02562 * 15 14 13 18 18 F 1.39905 * 109.46866 * 300.00007 * 15 14 13 19 19 C 1.39318 * 120.36491 * 0.25940 * 12 11 10 20 20 C 1.36440 * 120.18431 * 359.47916 * 19 12 11 21 21 H 0.97004 * 119.99134 * 0.02562 * 1 2 3 22 22 H 1.08000 * 120.08928 * 359.97438 * 10 9 7 23 23 H 1.08002 * 119.90521 * 179.97438 * 11 10 9 24 24 H 1.08991 * 109.47136 * 300.00328 * 14 13 12 25 25 H 1.09003 * 109.46837 * 60.00823 * 14 13 12 26 26 H 1.08000 * 119.90749 * 179.72031 * 19 12 11 27 27 H 1.07993 * 120.09507 * 180.26135 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2430 1.6176 0.0000 4 1 3.7029 1.3462 0.0006 5 1 1.8843 2.3963 -1.2125 6 1 1.8842 2.3965 1.2124 7 6 2.0083 -1.2116 0.0005 8 1 3.0489 -1.2342 0.2886 9 6 1.3536 -2.4049 -0.3757 10 6 1.8262 -3.6481 0.0876 11 6 1.1883 -4.7964 -0.2810 12 6 0.0722 -4.7416 -1.1128 13 8 -0.5561 -5.8882 -1.4751 14 6 -1.6942 -5.7620 -2.3302 15 6 -2.2651 -7.1501 -2.6274 16 9 -2.6476 -7.7633 -1.4295 17 9 -3.3789 -7.0266 -3.4649 18 9 -1.2906 -7.9295 -3.2599 19 6 -0.3989 -3.5163 -1.5794 20 6 0.2243 -2.3583 -1.2159 21 1 -0.4849 0.8402 -0.0004 22 1 2.6917 -3.6923 0.7321 23 1 1.5497 -5.7506 0.0730 24 1 -2.4535 -5.1551 -1.8372 25 1 -1.3962 -5.2840 -3.2634 26 1 -1.2622 -3.4828 -2.2276 27 1 -0.1447 -1.4090 -1.5751 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019505120.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:58 Heat of formation + Delta-G solvation = -191.780874 kcal Electronic energy + Delta-G solvation = -17180.400989 eV Core-core repulsion = 13680.589197 eV Total energy + Delta-G solvation = -3499.811792 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -51.17726 -48.71675 -48.65227 -40.65267 -38.30201 -35.29476 -31.87670 -31.52984 -30.32153 -26.73923 -24.77686 -23.01051 -22.34192 -19.82670 -19.69871 -19.27720 -18.68921 -18.41774 -17.02048 -16.63206 -15.99478 -15.72139 -15.53161 -15.45437 -15.10074 -14.82845 -14.81625 -14.78399 -14.25408 -13.92097 -13.71704 -13.40577 -12.87285 -12.78512 -12.66031 -12.33869 -11.85339 -11.64649 -11.28548 -10.91492 -9.59308 -8.98840 -8.62964 -6.25503 0.89265 1.02837 1.36093 1.41392 1.50149 1.55878 2.19843 2.23090 2.69621 2.74424 2.93957 3.42203 3.68037 4.02530 4.02999 4.27113 4.38812 4.79286 4.97795 5.13074 5.34459 5.44909 5.62724 5.91719 6.04462 6.18138 6.46852 6.68664 6.93434 7.02231 8.34158 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.051727 B = 0.004804 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.175908 B = 5826.519719 C = 6128.639835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.036 3.964 3 Si 0.981 3.019 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.268 1.268 7 C -0.496 4.496 8 H 0.076 0.924 9 C 0.059 3.941 10 C -0.207 4.207 11 C -0.112 4.112 12 C -0.011 4.011 13 O -0.323 6.323 14 C 0.015 3.985 15 C 0.472 3.528 16 F -0.183 7.183 17 F -0.168 7.168 18 F -0.182 7.182 19 C -0.169 4.169 20 C -0.157 4.157 21 H 0.288 0.712 22 H 0.111 0.889 23 H 0.121 0.879 24 H 0.113 0.887 25 H 0.117 0.883 26 H 0.127 0.873 27 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.360 -6.280 -5.063 9.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.193 1.193 7 C -0.526 4.526 8 H 0.095 0.905 9 C 0.056 3.944 10 C -0.226 4.226 11 C -0.130 4.130 12 C -0.054 4.054 13 O -0.239 6.239 14 C -0.063 4.063 15 C 0.418 3.582 16 F -0.165 7.165 17 F -0.150 7.150 18 F -0.164 7.164 19 C -0.188 4.188 20 C -0.176 4.176 21 H 0.099 0.901 22 H 0.129 0.871 23 H 0.139 0.861 24 H 0.131 0.869 25 H 0.135 0.865 26 H 0.145 0.855 27 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.527 -6.358 -4.998 9.268 hybrid contribution 0.010 0.636 0.002 0.636 sum -4.517 -5.721 -4.996 8.837 Atomic orbital electron populations 1.69884 1.08873 1.30493 1.36066 1.26709 0.95493 1.04391 0.91305 0.85174 0.79438 0.76345 0.78858 1.18273 1.18909 1.19268 1.19781 0.98451 0.92401 1.41941 0.90538 1.17997 0.92623 0.93173 0.90560 1.20793 1.03833 0.92109 1.05885 1.19881 0.95188 0.98382 0.99570 1.18546 0.97829 0.83590 1.05400 1.85760 1.42125 1.30684 1.65328 1.23772 0.91256 0.92167 0.99063 1.20047 0.76004 0.87931 0.74218 1.93198 1.91496 1.85286 1.46473 1.93213 1.53670 1.96091 1.72009 1.93199 1.62920 1.77658 1.82584 1.20841 1.01986 0.92022 1.03956 1.20935 0.99274 0.96957 1.00472 0.90119 0.87094 0.86102 0.86890 0.86526 0.85507 0.87217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.76 10.96 21.82 0.24 -41.52 15 2 C 0.04 1.74 5.13 85.23 0.44 2.17 15 3 Si 0.98 37.09 29.60 68.60 2.03 39.12 15 4 H -0.26 -9.64 7.11 99.48 0.71 -8.93 15 5 H -0.26 -9.59 7.11 99.48 0.71 -8.89 15 6 H -0.27 -9.75 7.11 99.48 0.71 -9.05 15 7 C -0.50 -26.00 9.04 23.40 0.21 -25.79 15 8 H 0.08 3.88 7.91 -2.91 -0.02 3.85 15 9 C 0.06 3.07 5.57 -21.28 -0.12 2.95 15 10 C -0.21 -9.87 9.74 22.48 0.22 -9.65 15 11 C -0.11 -4.90 9.92 22.11 0.22 -4.68 15 12 C -0.01 -0.45 6.71 22.79 0.15 -0.30 15 13 O -0.32 -11.84 10.01 -89.89 -0.90 -12.74 15 14 C 0.01 0.40 4.69 71.98 0.34 0.74 15 15 C 0.47 12.08 3.32 71.98 0.24 12.32 15 16 F -0.18 -5.14 17.26 44.97 0.78 -4.36 15 17 F -0.17 -3.85 17.32 44.97 0.78 -3.07 15 18 F -0.18 -5.03 17.26 44.97 0.78 -4.25 15 19 C -0.17 -7.30 8.96 22.11 0.20 -7.10 15 20 C -0.16 -7.85 8.64 22.49 0.19 -7.66 15 21 H 0.29 13.10 8.30 -92.71 -0.77 12.33 15 22 H 0.11 4.93 8.06 -2.91 -0.02 4.91 15 23 H 0.12 4.69 8.06 -2.91 -0.02 4.67 15 24 H 0.11 2.79 7.66 -2.39 -0.02 2.77 15 25 H 0.12 2.77 7.64 -2.39 -0.02 2.75 15 26 H 0.13 4.51 6.27 -2.91 -0.02 4.49 15 27 H 0.11 5.71 6.16 -2.91 -0.02 5.69 15 Total: -1.00 -56.23 255.50 7.00 -49.23 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 1.21 Total: 14.59 kcal Atomic # 6 Polarization: -39.09 SS G_CDS: 2.09 Total: -37.00 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.24 Total: -41.52 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: -0.90 Total: -12.74 kcal Atomic # 9 Polarization: -14.01 SS G_CDS: 2.33 Total: -11.68 kcal Atomic # 14 Polarization: 37.09 SS G_CDS: 2.03 Total: 39.12 kcal Total: -56.23 7.00 -49.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019505120.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.548 kcal (2) G-P(sol) polarization free energy of solvation -56.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds