Wall clock time and date at job start Mon Mar 30 2020 06:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99635 * 2 1 4 4 H 1.48498 * 109.46929 * 239.99263 * 3 2 1 5 5 H 1.48497 * 109.47223 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46965 * 119.99724 * 3 2 1 7 7 C 1.37879 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99707 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99933 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.46937 * 179.97438 * 9 7 2 11 11 C 1.35905 * 116.99604 * 180.02562 * 10 9 7 12 12 C 1.38723 * 120.05884 * 359.72201 * 11 10 9 13 13 C 1.38145 * 119.94323 * 179.77076 * 12 11 10 14 14 C 1.38260 * 120.05692 * 0.50972 * 13 12 11 15 15 C 1.50706 * 119.94706 * 179.76915 * 14 13 12 16 16 F 1.39902 * 109.46723 * 269.97560 * 15 14 13 17 17 F 1.39899 * 109.47068 * 29.97509 * 15 14 13 18 18 F 1.39895 * 109.47405 * 149.97596 * 15 14 13 19 19 C 1.38268 * 120.10972 * 359.74026 * 14 13 12 20 20 C 1.38139 * 120.05510 * 0.02562 * 19 14 13 21 21 H 0.96999 * 120.00916 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47314 * 59.99690 * 9 7 2 23 23 H 1.08998 * 109.47471 * 299.99725 * 9 7 2 24 24 H 1.08001 * 120.02769 * 0.02562 * 12 11 10 25 25 H 1.08006 * 119.97076 * 180.25587 * 13 12 11 26 26 H 1.08008 * 119.97007 * 179.97438 * 19 14 13 27 27 H 1.08001 * 120.02451 * 179.97438 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 2.1798 -3.5852 0.0005 11 6 1.6603 -4.8411 0.0000 12 6 0.2852 -5.0242 0.0053 13 6 -0.2402 -6.3018 -0.0001 14 6 0.6031 -7.3975 0.0000 15 6 0.0271 -8.7901 -0.0006 16 9 -0.1510 -9.2216 1.3182 17 9 -1.2067 -8.7842 -0.6601 18 9 0.9044 -9.6573 -0.6605 19 6 1.9740 -7.2176 -0.0001 20 6 2.5044 -5.9421 0.0004 21 1 -0.4851 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8903 24 1 -0.3739 -4.1687 0.0094 25 1 -1.3108 -6.4449 -0.0001 26 1 2.6307 -8.0751 0.0003 27 1 3.5753 -5.8021 0.0007 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034937007.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:20 Heat of formation + Delta-G solvation = -191.380890 kcal Electronic energy + Delta-G solvation = -17021.309283 eV Core-core repulsion = 13521.514836 eV Total energy + Delta-G solvation = -3499.794447 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -51.13056 -48.64679 -48.59150 -41.10075 -38.55560 -35.10437 -32.38648 -32.04953 -29.77438 -26.58344 -25.39031 -23.61175 -22.57231 -19.64843 -19.45033 -19.37849 -18.90566 -18.45970 -16.97742 -16.58953 -16.31099 -15.85969 -15.46000 -15.42745 -15.06384 -14.86946 -14.81174 -14.75795 -14.60199 -14.32518 -13.85170 -13.64778 -13.07060 -12.87464 -12.61245 -12.35674 -12.13087 -11.97644 -11.41146 -10.73911 -10.17383 -9.40701 -8.40969 -6.55348 0.01082 0.20610 1.40183 1.44026 1.52526 1.69240 2.23268 2.46078 2.58506 2.80183 2.94446 3.06597 3.47371 3.74389 3.84808 4.11993 4.34256 4.49880 4.66023 4.85482 4.93475 4.98772 5.13373 5.27269 5.47890 5.60417 5.79556 6.43324 6.68973 7.16435 8.70702 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.059328 B = 0.004367 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.835989 B = 6410.803774 C = 6702.838779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.014 3.986 3 Si 0.986 3.014 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.561 4.561 8 H 0.069 0.931 9 C 0.207 3.793 10 O -0.328 6.328 11 C 0.147 3.853 12 C -0.227 4.227 13 C -0.026 4.026 14 C -0.243 4.243 15 C 0.524 3.476 16 F -0.181 7.181 17 F -0.181 7.181 18 F -0.176 7.176 19 C -0.023 4.023 20 C -0.166 4.166 21 H 0.274 0.726 22 H 0.008 0.992 23 H 0.008 0.992 24 H 0.127 0.873 25 H 0.152 0.848 26 H 0.170 0.830 27 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.806 -15.300 -0.014 15.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.186 4.186 3 Si 0.808 3.192 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.598 4.598 8 H 0.087 0.913 9 C 0.134 3.866 10 O -0.241 6.241 11 C 0.099 3.901 12 C -0.246 4.246 13 C -0.045 4.045 14 C -0.245 4.245 15 C 0.470 3.530 16 F -0.162 7.162 17 F -0.162 7.162 18 F -0.157 7.157 19 C -0.040 4.040 20 C -0.184 4.184 21 H 0.083 0.917 22 H 0.026 0.974 23 H 0.026 0.974 24 H 0.144 0.856 25 H 0.170 0.830 26 H 0.188 0.812 27 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.823 -15.145 -0.014 15.167 hybrid contribution -0.362 0.817 0.001 0.894 sum 0.461 -14.328 -0.012 14.335 Atomic orbital electron populations 1.70026 1.07695 1.29187 1.49315 1.25922 0.95992 1.03291 0.93431 0.85188 0.78097 0.76417 0.79503 1.18901 1.19975 1.18893 1.21293 0.94505 0.90106 1.53881 0.91317 1.20302 0.88423 0.82360 0.95494 1.86091 1.38946 1.12785 1.86240 1.19901 0.92899 0.86114 0.91187 1.21400 0.94536 0.98834 1.09833 1.20831 1.00782 0.90126 0.92712 1.19890 0.95974 0.91409 1.17224 1.18004 0.75504 0.86057 0.73478 1.93213 1.95329 1.91248 1.36431 1.93174 1.44933 1.96881 1.81227 1.93174 1.69019 1.72412 1.81115 1.20957 0.93145 0.97440 0.92506 1.20659 1.00906 0.89365 1.07506 0.91671 0.97438 0.97422 0.85557 0.83041 0.81248 0.82715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.87 13.29 21.45 0.28 -52.58 15 2 C 0.01 0.74 5.46 84.66 0.46 1.21 15 3 Si 0.99 42.27 29.54 68.60 2.03 44.29 15 4 H -0.26 -10.92 7.11 99.48 0.71 -10.22 15 5 H -0.27 -11.30 7.11 99.48 0.71 -10.59 15 6 H -0.26 -10.92 7.11 99.48 0.71 -10.21 15 7 C -0.56 -31.72 9.43 25.60 0.24 -31.48 15 8 H 0.07 3.81 7.81 -2.91 -0.02 3.79 15 9 C 0.21 10.99 4.49 71.23 0.32 11.31 15 10 O -0.33 -15.46 10.12 -92.48 -0.94 -16.39 15 11 C 0.15 5.63 6.69 22.50 0.15 5.78 15 12 C -0.23 -8.16 9.04 22.36 0.20 -7.96 15 13 C -0.03 -0.77 9.39 22.25 0.21 -0.56 15 14 C -0.24 -6.36 5.45 -19.85 -0.11 -6.47 15 15 C 0.52 12.26 3.36 71.24 0.24 12.50 15 16 F -0.18 -4.33 17.30 44.97 0.78 -3.55 15 17 F -0.18 -4.33 16.46 44.97 0.74 -3.59 15 18 F -0.18 -3.89 16.46 44.97 0.74 -3.15 15 19 C -0.02 -0.56 9.39 22.25 0.21 -0.35 15 20 C -0.17 -4.97 9.99 22.36 0.22 -4.75 15 21 H 0.27 14.59 8.31 -92.71 -0.77 13.82 15 22 H 0.01 0.43 7.67 -2.39 -0.02 0.41 15 23 H 0.01 0.44 7.65 -2.39 -0.02 0.42 15 24 H 0.13 4.93 6.30 -2.91 -0.02 4.91 15 25 H 0.15 3.69 7.60 -2.91 -0.02 3.66 15 26 H 0.17 2.98 7.60 -2.91 -0.02 2.96 15 27 H 0.16 4.03 8.06 -2.91 -0.02 4.01 15 Total: -1.00 -59.76 258.18 6.99 -52.78 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: 1.20 Total: 2.96 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: 2.15 Total: -20.77 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: 0.28 Total: -52.58 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.94 Total: -16.39 kcal Atomic # 9 Polarization: -12.54 SS G_CDS: 2.26 Total: -10.28 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Total: -59.76 6.99 -52.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034937007.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.605 kcal (2) G-P(sol) polarization free energy of solvation -59.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds