Wall clock time and date at job start Mon Mar 30 2020 06:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38095 * 119.99769 * 2 1 4 4 C 1.38467 * 120.60654 * 180.02562 * 3 2 1 5 5 N 1.48021 * 119.91163 * 179.97438 * 4 3 2 6 6 O 1.31691 * 119.99946 * 359.97438 * 5 4 3 7 7 O 1.31697 * 119.99620 * 179.97438 * 5 4 3 8 8 C 1.38128 * 120.17090 * 359.97438 * 4 3 2 9 9 C 1.38905 * 119.68006 * 359.97438 * 8 4 3 10 10 C 1.47987 * 133.91046 * 179.97438 * 9 8 4 11 11 C 1.38498 * 127.16592 * 0.02562 * 10 9 8 12 12 H 1.08008 * 119.99766 * 0.02562 * 11 10 9 13 13 C 1.46688 * 120.00464 * 179.97438 * 11 10 9 14 14 N 1.29465 * 119.99324 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00256 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46877 * 59.99986 * 15 13 11 17 17 H 1.48497 * 109.46968 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.46976 * 299.99935 * 15 13 11 19 19 C 1.41082 * 105.67604 * 180.02562 * 10 9 8 20 20 N 1.33205 * 109.27108 * 0.02562 * 19 10 9 21 21 H 0.96996 * 124.40150 * 179.97438 * 20 19 10 22 22 C 1.38569 * 111.20163 * 359.97438 * 20 19 10 23 23 H 1.08997 * 109.47395 * 89.99833 * 1 2 3 24 24 H 1.09000 * 109.47341 * 210.00172 * 1 2 3 25 25 H 1.09002 * 109.47385 * 330.00269 * 1 2 3 26 26 H 1.07997 * 119.69828 * 359.74593 * 3 2 1 27 27 H 1.07999 * 120.15922 * 179.97438 * 8 4 3 28 28 H 0.97005 * 119.99763 * 179.97438 * 14 13 11 29 29 H 1.07994 * 125.36799 * 180.02562 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1960 0.0000 4 6 3.5820 1.2107 -0.0005 5 7 4.3065 2.5015 -0.0011 6 8 3.6342 3.6339 -0.0016 7 8 5.6234 2.5174 -0.0011 8 6 4.2889 0.0240 -0.0005 9 6 3.6040 -1.1845 0.0005 10 6 4.0256 -2.6031 0.0004 11 6 5.3218 -3.0908 -0.0005 12 1 6.1566 -2.4054 -0.0008 13 6 5.5611 -4.5380 0.0000 14 7 4.5604 -5.3594 0.0018 15 14 7.3095 -5.1957 -0.0004 16 1 8.0198 -4.7141 1.2116 17 1 7.2798 -6.6803 0.0009 18 1 8.0187 -4.7153 -1.2135 19 6 2.8321 -3.3554 0.0013 20 7 1.7896 -2.5261 0.0014 21 1 0.8625 -2.8112 0.0017 22 6 2.2018 -1.2031 0.0012 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 1.6525 2.1284 -0.0042 27 1 5.3688 0.0357 -0.0014 28 1 4.7186 -6.3165 0.0018 29 1 2.7729 -4.4337 0.0019 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037632727.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:28 Heat of formation + Delta-G solvation = 57.888119 kcal Electronic energy + Delta-G solvation = -16879.296911 eV Core-core repulsion = 13964.461070 eV Total energy + Delta-G solvation = -2914.835840 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.43561 -38.08468 -36.04157 -34.21724 -33.40344 -32.63923 -30.18820 -28.65678 -26.64886 -25.35455 -24.97177 -21.18134 -20.84726 -20.00432 -17.70521 -17.12860 -16.80844 -16.54180 -15.47552 -14.97657 -14.87491 -13.99341 -13.91553 -13.13237 -13.01824 -12.72504 -12.40029 -12.05472 -11.98236 -11.59331 -11.57387 -10.96040 -10.90256 -10.44563 -10.32831 -10.16478 -10.06987 -9.93643 -9.81357 -8.88357 -7.73564 -7.30897 -7.30871 -4.33192 0.25711 1.78149 2.25285 2.28997 2.75726 2.81956 2.84359 3.56523 3.63709 4.00201 4.19278 4.92432 5.10674 5.32547 5.46753 5.68129 5.74478 5.78706 6.00642 6.08436 6.22116 6.37483 6.52365 6.62724 6.72535 6.86511 7.08603 7.18573 7.42122 7.71635 7.87727 7.96408 8.30013 8.41411 8.62634 9.58806 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.022987 B = 0.007326 C = 0.005572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.793575 B = 3821.186126 C = 5023.835899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.103 4.103 3 C -0.071 4.071 4 C -0.083 4.083 5 N 0.026 4.974 6 O -0.262 6.262 7 O -0.257 6.257 8 C 0.037 3.963 9 C -0.142 4.142 10 C 0.053 3.947 11 C -0.391 4.391 12 H 0.090 0.910 13 C 0.061 3.939 14 N -0.762 5.762 15 Si 0.931 3.069 16 H -0.258 1.258 17 H -0.274 1.274 18 H -0.258 1.258 19 C -0.143 4.143 20 N -0.508 5.508 21 H 0.401 0.599 22 C 0.071 3.929 23 H 0.064 0.936 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.133 0.867 27 H 0.137 0.863 28 H 0.294 0.706 29 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.217 -2.937 -0.020 5.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.108 4.108 3 C -0.092 4.092 4 C -0.179 4.179 5 N 0.473 4.527 6 O -0.433 6.433 7 O -0.429 6.429 8 C 0.016 3.984 9 C -0.149 4.149 10 C 0.049 3.951 11 C -0.419 4.419 12 H 0.108 0.892 13 C -0.163 4.163 14 N -0.384 5.384 15 Si 0.754 3.246 16 H -0.182 1.182 17 H -0.199 1.199 18 H -0.182 1.182 19 C -0.273 4.273 20 N -0.099 5.099 21 H 0.235 0.765 22 C -0.049 4.049 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.151 0.849 27 H 0.155 0.845 28 H 0.106 0.894 29 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -5.541 -3.693 -0.017 6.658 hybrid contribution 0.471 -0.119 -0.001 0.485 sum -5.070 -3.812 -0.018 6.343 Atomic orbital electron populations 1.20583 0.91379 1.02127 1.01711 1.18378 0.94727 0.89414 1.08257 1.19931 0.90663 0.97721 1.00920 1.19504 0.91480 0.80215 1.26746 1.50157 1.02509 1.04020 0.96047 1.96141 1.67704 1.18543 1.60926 1.96175 0.89775 1.96351 1.60570 1.20181 1.00374 0.88653 0.89232 1.18932 0.91974 0.93345 1.10662 1.18136 0.93118 0.86405 0.97474 1.20061 0.92645 0.90333 1.38830 0.89171 1.27487 1.00238 0.96659 0.91937 1.68729 1.34412 1.05417 1.29861 0.85942 0.80040 0.77751 0.80836 1.18196 1.19902 1.18192 1.23073 0.83979 0.96225 1.24000 1.41147 1.08912 1.04216 1.55636 0.76483 1.17989 0.93493 0.84628 1.08807 0.91744 0.92559 0.91520 0.84880 0.84490 0.89379 0.79046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.31 10.01 36.01 0.36 -0.95 15 2 C -0.10 -1.81 5.90 -104.42 -0.62 -2.43 15 3 C -0.07 -1.35 9.21 -39.55 -0.36 -1.72 15 4 C -0.08 -1.80 6.89 -79.90 -0.55 -2.35 15 5 N 0.03 0.61 4.98 33.99 0.17 0.78 15 6 O -0.26 -6.15 19.14 -31.56 -0.60 -6.76 15 7 O -0.26 -6.22 19.15 -31.57 -0.60 -6.82 15 8 C 0.04 0.80 9.61 -39.37 -0.38 0.43 15 9 C -0.14 -3.13 6.33 -104.90 -0.66 -3.80 15 10 C 0.05 1.23 6.11 -104.73 -0.64 0.59 15 11 C -0.39 -8.96 9.63 -36.08 -0.35 -9.31 15 12 H 0.09 2.00 7.94 -52.48 -0.42 1.58 15 13 C 0.06 1.28 5.67 -15.14 -0.09 1.19 15 14 N -0.76 -15.83 10.46 56.00 0.59 -15.24 15 15 Si 0.93 15.93 29.65 -169.99 -5.04 10.89 15 16 H -0.26 -4.45 7.11 56.52 0.40 -4.05 15 17 H -0.27 -4.52 7.11 56.52 0.40 -4.11 15 18 H -0.26 -4.45 7.11 56.52 0.40 -4.05 15 19 C -0.14 -3.02 10.94 -15.88 -0.17 -3.20 15 20 N -0.51 -9.15 5.86 -9.77 -0.06 -9.21 15 21 H 0.40 5.61 8.72 -40.82 -0.36 5.25 15 22 C 0.07 1.39 6.89 -83.81 -0.58 0.81 15 23 H 0.06 0.76 8.14 -51.93 -0.42 0.33 15 24 H 0.06 0.65 7.85 -51.93 -0.41 0.24 15 25 H 0.07 0.77 8.09 -51.93 -0.42 0.35 15 26 H 0.13 2.33 7.56 -52.49 -0.40 1.93 15 27 H 0.14 2.91 7.58 -52.49 -0.40 2.51 15 28 H 0.29 5.45 8.27 -40.82 -0.34 5.11 15 29 H 0.19 4.06 5.77 -52.49 -0.30 3.75 15 LS Contribution 267.66 15.07 4.03 4.03 Total: -1.00 -26.39 267.66 -7.81 -34.19 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -2.25 Total: 8.85 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -4.04 Total: -20.72 kcal Atomic # 7 Polarization: -24.37 SS G_CDS: 0.70 Total: -23.68 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -1.21 Total: -13.58 kcal Atomic # 14 Polarization: 15.93 SS G_CDS: -5.04 Total: 10.89 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -26.39 -7.81 -34.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037632727.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.082 kcal (2) G-P(sol) polarization free energy of solvation -26.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds