Wall clock time and date at job start Mon Mar 30 2020 06:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38095 * 119.99769 * 2 1 4 4 C 1.38467 * 120.60654 * 180.02562 * 3 2 1 5 5 N 1.48021 * 119.91163 * 179.97438 * 4 3 2 6 6 O 1.31691 * 119.99946 * 359.97438 * 5 4 3 7 7 O 1.31697 * 119.99620 * 179.97438 * 5 4 3 8 8 C 1.38128 * 120.17090 * 359.97438 * 4 3 2 9 9 C 1.38905 * 119.68006 * 359.97438 * 8 4 3 10 10 C 1.47987 * 133.91046 * 179.97438 * 9 8 4 11 11 C 1.38498 * 127.16592 * 0.02562 * 10 9 8 12 12 H 1.08008 * 119.99766 * 0.02562 * 11 10 9 13 13 C 1.46688 * 120.00464 * 179.97438 * 11 10 9 14 14 N 1.29465 * 119.99324 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00256 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46877 * 59.99986 * 15 13 11 17 17 H 1.48497 * 109.46968 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.46976 * 299.99935 * 15 13 11 19 19 C 1.41082 * 105.67604 * 180.02562 * 10 9 8 20 20 N 1.33205 * 109.27108 * 0.02562 * 19 10 9 21 21 H 0.96996 * 124.40150 * 179.97438 * 20 19 10 22 22 C 1.38569 * 111.20163 * 359.97438 * 20 19 10 23 23 H 1.08997 * 109.47395 * 89.99833 * 1 2 3 24 24 H 1.09000 * 109.47341 * 210.00172 * 1 2 3 25 25 H 1.09002 * 109.47385 * 330.00269 * 1 2 3 26 26 H 1.07997 * 119.69828 * 359.74593 * 3 2 1 27 27 H 1.07999 * 120.15922 * 179.97438 * 8 4 3 28 28 H 0.97005 * 119.99763 * 179.97438 * 14 13 11 29 29 H 1.07994 * 125.36799 * 180.02562 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1960 0.0000 4 6 3.5820 1.2107 -0.0005 5 7 4.3065 2.5015 -0.0011 6 8 3.6342 3.6339 -0.0016 7 8 5.6234 2.5174 -0.0011 8 6 4.2889 0.0240 -0.0005 9 6 3.6040 -1.1845 0.0005 10 6 4.0256 -2.6031 0.0004 11 6 5.3218 -3.0908 -0.0005 12 1 6.1566 -2.4054 -0.0008 13 6 5.5611 -4.5380 0.0000 14 7 4.5604 -5.3594 0.0018 15 14 7.3095 -5.1957 -0.0004 16 1 8.0198 -4.7141 1.2116 17 1 7.2798 -6.6803 0.0009 18 1 8.0187 -4.7153 -1.2135 19 6 2.8321 -3.3554 0.0013 20 7 1.7896 -2.5261 0.0014 21 1 0.8625 -2.8112 0.0017 22 6 2.2018 -1.2031 0.0012 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 1.6525 2.1284 -0.0042 27 1 5.3688 0.0357 -0.0014 28 1 4.7186 -6.3165 0.0018 29 1 2.7729 -4.4337 0.0019 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037632727.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:28 Heat of formation + Delta-G solvation = 44.387755 kcal Electronic energy + Delta-G solvation = -16879.882330 eV Core-core repulsion = 13964.461070 eV Total energy + Delta-G solvation = -2915.421260 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.03486 -39.75328 -37.61921 -35.88792 -35.11608 -34.13108 -31.80311 -30.30360 -27.97705 -27.00245 -26.67044 -22.72464 -22.47772 -21.63504 -19.31262 -18.76892 -18.50630 -18.22465 -17.03693 -16.67475 -16.39362 -15.50178 -15.39880 -14.63566 -14.49348 -13.92399 -13.87665 -13.66061 -13.37457 -13.04691 -12.87659 -12.50684 -12.35843 -12.08002 -12.05140 -11.82908 -11.69076 -11.63373 -11.49234 -10.45835 -9.33470 -8.96906 -8.94324 -6.01025 -1.56392 0.24147 0.60960 0.64668 1.34231 1.41300 1.50225 2.05040 2.13008 2.49448 2.61440 3.17951 3.63791 3.83314 4.19325 4.20835 4.24876 4.54452 4.68226 4.76429 4.84923 4.89417 4.98596 5.07662 5.22487 5.36922 5.46455 5.55205 5.75219 6.07271 6.15752 6.26584 6.58615 6.72229 7.03126 7.96930 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.022987 B = 0.007326 C = 0.005572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.793575 B = 3821.186126 C = 5023.835899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.077 4.077 3 C -0.089 4.089 4 C -0.086 4.086 5 N 0.030 4.970 6 O -0.287 6.287 7 O -0.321 6.321 8 C 0.026 3.974 9 C -0.165 4.165 10 C 0.021 3.979 11 C -0.412 4.412 12 H 0.084 0.916 13 C 0.033 3.967 14 N -0.765 5.765 15 Si 0.995 3.005 16 H -0.261 1.261 17 H -0.255 1.255 18 H -0.261 1.261 19 C -0.141 4.141 20 N -0.476 5.476 21 H 0.425 0.575 22 C 0.060 3.940 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.150 0.850 27 H 0.126 0.874 28 H 0.309 0.691 29 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.134 -5.683 -0.025 9.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.081 4.081 3 C -0.111 4.111 4 C -0.185 4.185 5 N 0.459 4.541 6 O -0.451 6.451 7 O -0.476 6.476 8 C 0.004 3.996 9 C -0.172 4.172 10 C 0.016 3.984 11 C -0.439 4.439 12 H 0.102 0.898 13 C -0.191 4.191 14 N -0.388 5.388 15 Si 0.814 3.186 16 H -0.186 1.186 17 H -0.179 1.179 18 H -0.186 1.186 19 C -0.273 4.273 20 N -0.068 5.068 21 H 0.264 0.736 22 C -0.062 4.062 23 H 0.103 0.897 24 H 0.094 0.906 25 H 0.103 0.897 26 H 0.167 0.833 27 H 0.144 0.856 28 H 0.122 0.878 29 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -7.414 -6.323 -0.022 9.744 hybrid contribution 0.923 0.201 -0.001 0.945 sum -6.491 -6.122 -0.024 8.922 Atomic orbital electron populations 1.20738 0.87354 1.04122 1.03582 1.18819 0.97279 0.87628 1.04394 1.20181 0.89502 0.99161 1.02222 1.19815 0.92541 0.79313 1.26821 1.50272 1.02258 1.04402 0.97210 1.96083 1.67533 1.19282 1.62219 1.96142 0.90660 1.96499 1.64295 1.20167 1.00096 0.89191 0.90172 1.19138 0.93691 0.92987 1.11400 1.18584 0.94123 0.87429 0.98248 1.20443 0.92849 0.91920 1.38696 0.89797 1.28189 1.03864 0.95870 0.91214 1.68672 1.35870 1.06480 1.27760 0.85014 0.75280 0.78017 0.80274 1.18569 1.17891 1.18556 1.23047 0.84141 0.96433 1.23693 1.41049 1.09771 1.03310 1.52684 0.73646 1.18151 0.92681 0.85747 1.09580 0.89709 0.90556 0.89660 0.83277 0.85605 0.87767 0.78713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.15 10.01 71.24 0.71 -1.43 15 2 C -0.08 -2.48 5.90 -19.73 -0.12 -2.60 15 3 C -0.09 -3.31 9.21 22.29 0.21 -3.11 15 4 C -0.09 -3.80 6.89 36.40 0.25 -3.55 15 5 N 0.03 1.46 4.98 -46.39 -0.23 1.23 15 6 O -0.29 -14.08 19.14 3.53 0.07 -14.01 15 7 O -0.32 -16.79 19.15 3.52 0.07 -16.72 15 8 C 0.03 1.15 9.61 22.40 0.22 1.37 15 9 C -0.16 -7.29 6.33 -20.05 -0.13 -7.42 15 10 C 0.02 0.95 6.11 -19.93 -0.12 0.83 15 11 C -0.41 -18.84 9.63 24.54 0.24 -18.60 15 12 H 0.08 3.82 7.94 -2.91 -0.02 3.80 15 13 C 0.03 1.32 5.67 87.25 0.49 1.81 15 14 N -0.77 -29.94 10.46 23.24 0.24 -29.70 15 15 Si 0.99 31.00 29.65 68.60 2.03 33.03 15 16 H -0.26 -8.30 7.11 99.48 0.71 -7.59 15 17 H -0.26 -7.18 7.11 99.48 0.71 -6.48 15 18 H -0.26 -8.29 7.11 99.48 0.71 -7.58 15 19 C -0.14 -5.66 10.94 85.18 0.93 -4.73 15 20 N -0.48 -15.64 5.86 -184.81 -1.08 -16.73 15 21 H 0.42 9.99 8.72 -92.71 -0.81 9.18 15 22 C 0.06 2.24 6.89 38.73 0.27 2.51 15 23 H 0.08 1.55 8.14 -2.39 -0.02 1.53 15 24 H 0.08 1.34 7.85 -2.39 -0.02 1.32 15 25 H 0.08 1.57 8.09 -2.39 -0.02 1.55 15 26 H 0.15 5.02 7.56 -2.91 -0.02 5.00 15 27 H 0.13 5.79 7.58 -2.91 -0.02 5.77 15 28 H 0.31 10.49 8.27 -92.70 -0.77 9.72 15 29 H 0.20 7.75 5.77 -2.91 -0.02 7.73 15 Total: -1.00 -58.32 267.66 4.45 -53.87 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.40 Total: 23.95 kcal Atomic # 6 Polarization: -37.87 SS G_CDS: 2.95 Total: -34.92 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -1.07 Total: -45.20 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: 0.13 Total: -30.73 kcal Atomic # 14 Polarization: 31.00 SS G_CDS: 2.03 Total: 33.03 kcal Total: -58.32 4.45 -53.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037632727.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.257 kcal (2) G-P(sol) polarization free energy of solvation -58.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds