Wall clock time and date at job start Mon Mar 30 2020 06:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38135 * 119.91367 * 2 1 4 4 C 1.38912 * 119.67717 * 179.97438 * 3 2 1 5 5 C 1.47988 * 133.91243 * 180.02562 * 4 3 2 6 6 C 1.38500 * 127.16316 * 0.02958 * 5 4 3 7 7 H 1.07997 * 120.00057 * 359.97438 * 6 5 4 8 8 C 1.46689 * 120.00036 * 180.02562 * 6 5 4 9 9 N 1.29473 * 119.99730 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 120.00150 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47149 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47440 * 119.99669 * 10 8 6 13 13 H 1.48506 * 109.46875 * 239.99555 * 10 8 6 14 14 C 1.41081 * 105.67085 * 180.02562 * 5 4 3 15 15 N 1.33200 * 109.27605 * 0.02562 * 14 5 4 16 16 H 0.97001 * 124.39654 * 179.97438 * 15 14 5 17 17 C 1.38562 * 111.20078 * 0.24374 * 15 14 5 18 18 C 1.38937 * 132.68977 * 180.45637 * 17 15 14 19 19 N 1.48020 * 120.00046 * 359.33699 * 18 17 15 20 20 O 1.31703 * 119.99824 * 180.28738 * 19 18 17 21 21 O 1.31697 * 119.99900 * 0.29138 * 19 18 17 22 22 C 1.38091 * 119.99617 * 179.62937 * 18 17 15 23 23 H 1.09002 * 109.47643 * 89.99359 * 1 2 3 24 24 H 1.08997 * 109.46853 * 209.99540 * 1 2 3 25 25 H 1.09004 * 109.47153 * 329.99423 * 1 2 3 26 26 H 1.07998 * 120.16293 * 0.02562 * 3 2 1 27 27 H 0.96993 * 119.99520 * 180.02562 * 9 8 6 28 28 H 1.08002 * 125.35729 * 180.02562 * 14 5 4 29 29 H 1.07997 * 119.69379 * 179.71828 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.1973 0.0000 4 6 3.5849 1.1916 0.0005 5 6 4.6157 2.2534 0.0012 6 6 4.4065 3.6226 0.0020 7 1 3.4004 4.0151 0.0018 8 6 5.5515 4.5395 0.0020 9 7 6.7577 4.0689 0.0017 10 14 5.2694 6.3860 0.0023 11 1 3.8106 6.6638 0.0019 12 1 5.8867 6.9809 1.2149 13 1 5.8866 6.9812 -1.2102 14 6 5.8558 1.5807 0.0009 15 7 5.6428 0.2659 -0.0004 16 1 6.3453 -0.4030 -0.0012 17 6 4.2875 -0.0222 -0.0065 18 6 3.5783 -1.2169 -0.0019 19 7 4.3028 -2.5077 -0.0025 20 8 3.6305 -3.6402 -0.0038 21 8 5.6197 -2.5236 -0.0017 22 6 2.1975 -1.2001 -0.0027 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5139 26 1 1.6571 2.1333 0.0004 27 1 7.5147 4.6752 0.0021 28 1 6.8252 2.0570 0.0016 29 1 1.6511 -2.1317 -0.0037 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037632729.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:21 Heat of formation + Delta-G solvation = 55.402531 kcal Electronic energy + Delta-G solvation = -17014.192636 eV Core-core repulsion = 14099.249012 eV Total energy + Delta-G solvation = -2914.943624 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.40655 -37.73293 -36.63592 -34.22230 -33.26020 -31.65318 -31.00449 -28.73240 -26.33465 -25.34501 -24.98385 -21.29515 -20.70650 -19.96502 -18.05015 -17.11880 -16.45825 -16.32677 -15.48279 -15.01926 -14.90849 -13.90869 -13.63228 -13.58805 -13.08780 -12.93463 -12.11517 -11.94575 -11.67441 -11.62673 -11.55164 -11.09103 -10.67907 -10.47731 -10.36866 -10.25738 -9.99780 -9.95015 -9.81699 -9.08106 -7.57773 -7.37541 -7.31595 -4.31482 0.14707 1.96079 2.16584 2.31107 2.68628 2.79212 2.84181 3.52286 3.65138 4.15508 4.16713 4.90974 5.23359 5.25361 5.48709 5.61566 5.86879 5.88929 5.91386 6.12256 6.30400 6.35179 6.44094 6.54651 6.77619 6.97906 7.11851 7.25092 7.41974 7.71589 7.90930 7.98932 8.28752 8.44742 8.71728 9.57551 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.027474 B = 0.007111 C = 0.005666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.893829 B = 3936.397205 C = 4940.145536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.184 4.184 3 C 0.013 3.987 4 C -0.123 4.123 5 C 0.048 3.952 6 C -0.381 4.381 7 H 0.091 0.909 8 C 0.057 3.943 9 N -0.753 5.753 10 Si 0.932 3.068 11 H -0.254 1.254 12 H -0.268 1.268 13 H -0.268 1.268 14 C -0.155 4.155 15 N -0.487 5.487 16 H 0.413 0.587 17 C 0.076 3.924 18 C -0.042 4.042 19 N 0.028 4.972 20 O -0.282 6.282 21 O -0.292 6.292 22 C -0.011 4.011 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.127 0.873 27 H 0.294 0.706 28 H 0.194 0.806 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.662 3.737 0.000 6.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.188 4.188 3 C -0.007 4.007 4 C -0.129 4.129 5 C 0.043 3.957 6 C -0.409 4.409 7 H 0.109 0.891 8 C -0.168 4.168 9 N -0.375 5.375 10 Si 0.755 3.245 11 H -0.177 1.177 12 H -0.193 1.193 13 H -0.193 1.193 14 C -0.285 4.285 15 N -0.083 5.083 16 H 0.251 0.749 17 C -0.048 4.048 18 C -0.142 4.142 19 N 0.460 4.540 20 O -0.444 6.444 21 O -0.451 6.451 22 C -0.031 4.031 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.145 0.855 27 H 0.107 0.893 28 H 0.210 0.790 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.358 4.027 0.004 6.702 hybrid contribution 0.702 -0.051 -0.012 0.704 sum -4.656 3.976 -0.008 6.122 Atomic orbital electron populations 1.20515 0.90697 1.02122 1.01571 1.19200 0.95744 0.91425 1.12459 1.20674 0.92217 0.97320 0.90513 1.19237 0.92686 0.92445 1.08519 1.18184 0.88307 0.91372 0.97821 1.20102 0.93453 0.89300 1.38002 0.89103 1.27526 0.94014 1.02945 0.92327 1.68772 1.00412 1.39397 1.28946 0.85826 0.80625 0.78955 0.79068 1.17711 1.19326 1.19331 1.23065 1.00978 0.79358 1.25114 1.41463 1.04780 1.09078 1.52961 0.74861 1.17381 0.84973 0.91935 1.10466 1.19080 0.91150 0.77645 1.26330 1.50088 1.02275 1.03843 0.97819 1.96129 1.67571 1.18652 1.62091 1.96066 0.90254 1.96131 1.62651 1.20390 0.89982 0.99117 0.93587 0.92108 0.92171 0.91904 0.85490 0.89328 0.79010 0.84556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.13 10.01 36.00 0.36 -0.77 15 2 C -0.18 -3.07 5.88 -104.58 -0.62 -3.69 15 3 C 0.01 0.24 9.74 -39.37 -0.38 -0.14 15 4 C -0.12 -2.70 6.34 -104.90 -0.66 -3.36 15 5 C 0.05 1.12 6.11 -104.73 -0.64 0.48 15 6 C -0.38 -8.44 9.63 -36.07 -0.35 -8.78 15 7 H 0.09 1.86 7.94 -52.49 -0.42 1.44 15 8 C 0.06 1.17 5.67 -15.14 -0.09 1.09 15 9 N -0.75 -15.93 10.46 56.00 0.59 -15.34 15 10 Si 0.93 15.33 29.65 -169.99 -5.04 10.29 15 11 H -0.25 -4.12 7.11 56.52 0.40 -3.71 15 12 H -0.27 -4.39 7.11 56.52 0.40 -3.99 15 13 H -0.27 -4.39 7.11 56.52 0.40 -3.99 15 14 C -0.15 -3.58 10.94 -15.88 -0.17 -3.76 15 15 N -0.49 -10.93 5.69 -9.77 -0.06 -10.99 15 16 H 0.41 8.73 7.20 -40.82 -0.29 8.44 15 17 C 0.08 1.74 6.84 -83.81 -0.57 1.17 15 18 C -0.04 -0.93 6.90 -79.74 -0.55 -1.48 15 19 N 0.03 0.67 4.98 34.06 0.17 0.84 15 20 O -0.28 -6.80 19.14 -31.57 -0.60 -7.40 15 21 O -0.29 -7.18 17.72 -31.57 -0.56 -7.73 15 22 C -0.01 -0.20 9.21 -39.55 -0.36 -0.56 15 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 24 H 0.06 0.67 8.08 -51.93 -0.42 0.25 15 25 H 0.06 0.68 8.08 -51.93 -0.42 0.26 15 26 H 0.13 1.98 8.06 -52.49 -0.42 1.56 15 27 H 0.29 5.50 8.27 -40.82 -0.34 5.16 15 28 H 0.19 4.44 5.77 -52.49 -0.30 4.14 15 29 H 0.14 2.33 7.56 -52.49 -0.40 1.93 15 LS Contribution 265.33 15.07 4.00 4.00 Total: -1.00 -26.64 265.33 -7.77 -34.41 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -2.23 Total: 11.75 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -4.04 Total: -19.82 kcal Atomic # 7 Polarization: -26.19 SS G_CDS: 0.70 Total: -25.49 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -1.16 Total: -15.14 kcal Atomic # 14 Polarization: 15.33 SS G_CDS: -5.04 Total: 10.29 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -26.64 -7.77 -34.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037632729.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.809 kcal (2) G-P(sol) polarization free energy of solvation -26.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds