Wall clock time and date at job start Mon Mar 30 2020 05:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30734 * 1 3 3 Si 1.86798 * 119.99633 * 2 1 4 4 H 1.48506 * 109.46985 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 299.99861 * 3 2 1 6 6 H 1.48506 * 109.47035 * 60.00276 * 3 2 1 7 7 C 1.40176 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99578 * 179.97438 * 7 2 1 9 9 C 1.39877 * 119.99842 * 0.27846 * 7 2 1 10 10 N 1.31585 * 125.28962 * 179.71918 * 9 7 2 11 11 C 1.31245 * 115.81793 * 179.97438 * 10 9 7 12 12 C 1.48214 * 122.47339 * 180.02562 * 11 10 9 13 13 C 1.39527 * 120.09602 * 184.97416 * 12 11 10 14 14 C 1.38011 * 120.01375 * 180.02562 * 13 12 11 15 15 C 1.38246 * 120.21238 * 359.96290 * 14 13 12 16 16 C 1.39005 * 120.19082 * 0.02562 * 15 14 13 17 17 N 1.39691 * 120.00800 * 180.02562 * 16 15 14 18 18 C 1.38688 * 119.98240 * 359.74571 * 16 15 14 19 19 C 1.37224 * 115.05280 * 0.02562 * 11 10 9 20 20 S 1.70999 * 109.08015 * 359.76607 * 19 11 10 21 21 H 0.96996 * 120.00367 * 359.97438 * 1 2 3 22 22 H 1.07993 * 119.99189 * 0.02562 * 13 12 11 23 23 H 1.08000 * 119.88883 * 179.97438 * 14 13 12 24 24 H 1.07996 * 119.90480 * 180.02562 * 15 14 13 25 25 H 0.97003 * 119.99857 * 0.02562 * 17 16 15 26 26 H 0.96996 * 119.99949 * 179.97438 * 17 16 15 27 27 H 1.07994 * 120.10316 * 180.25915 * 18 16 15 28 28 H 1.08001 * 125.45659 * 180.02562 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 3.7013 1.3465 0.0006 5 1 1.8825 2.3964 -1.2125 6 1 1.8824 2.3964 1.2126 7 6 2.0082 -1.2140 0.0005 8 1 3.0882 -1.2139 0.0001 9 6 1.3088 -2.4253 -0.0048 10 7 1.8589 -3.6207 -0.0101 11 6 1.0245 -4.6338 -0.0141 12 6 1.4838 -6.0429 -0.0197 13 6 0.5573 -7.0804 -0.1284 14 6 0.9868 -8.3920 -0.1329 15 6 2.3344 -8.6830 -0.0308 16 6 3.2650 -7.6562 0.0777 17 7 4.6259 -7.9546 0.1802 18 6 2.8426 -6.3352 0.0783 19 6 -0.3045 -4.2920 -0.0126 20 16 -0.4434 -2.5878 0.0008 21 1 -0.4850 0.8400 0.0004 22 1 -0.4962 -6.8571 -0.2090 23 1 0.2678 -9.1935 -0.2167 24 1 2.6651 -9.7111 -0.0352 25 1 4.9215 -8.8784 0.1753 26 1 5.2752 -7.2379 0.2555 27 1 3.5643 -5.5358 0.1582 28 1 -1.1303 -4.9880 -0.0149 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040420636.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:45 Heat of formation + Delta-G solvation = 37.085509 kcal Electronic energy + Delta-G solvation = -14385.886894 eV Core-core repulsion = 11912.901856 eV Total energy + Delta-G solvation = -2472.985038 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.93864 -37.18786 -34.35016 -33.80848 -30.81454 -28.91375 -27.90226 -26.12659 -23.39158 -21.89411 -20.89810 -18.51149 -17.72607 -16.46048 -16.30200 -15.40633 -15.25024 -14.99018 -13.86101 -13.19989 -13.18072 -13.07706 -12.71630 -12.37982 -12.21511 -11.74573 -11.44472 -11.04574 -10.72612 -10.48390 -10.31906 -10.27998 -9.68609 -9.48688 -8.53124 -7.87064 -7.78518 -7.20279 -7.09037 -6.83999 -4.74331 1.70936 2.13080 2.59253 2.92894 3.00852 3.06556 3.49529 3.68206 3.99124 4.02278 4.19944 4.62616 5.26468 5.38876 5.43303 5.70541 5.94072 6.12854 6.31023 6.41710 6.69409 6.79167 6.81734 6.97877 7.03307 7.33454 7.49032 7.56196 7.88270 7.90105 8.05605 8.31427 8.40275 9.72011 9.81412 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.037508 B = 0.005852 C = 0.005074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.325494 B = 4783.153186 C = 5517.264863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.055 3.945 3 Si 0.941 3.059 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.376 4.376 8 H 0.103 0.897 9 C 0.203 3.797 10 N -0.588 5.588 11 C 0.129 3.871 12 C 0.054 3.946 13 C -0.168 4.168 14 C -0.080 4.080 15 C -0.214 4.214 16 C 0.204 3.796 17 N -0.885 5.885 18 C -0.170 4.170 19 C -0.443 4.443 20 S 0.121 5.879 21 H 0.298 0.702 22 H 0.117 0.883 23 H 0.115 0.885 24 H 0.110 0.890 25 H 0.392 0.608 26 H 0.396 0.604 27 H 0.129 0.871 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.899 -6.598 0.123 7.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.167 4.167 3 Si 0.765 3.235 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.418 4.418 8 H 0.121 0.879 9 C -0.051 4.051 10 N -0.309 5.309 11 C -0.010 4.010 12 C 0.050 3.950 13 C -0.189 4.189 14 C -0.099 4.099 15 C -0.237 4.237 16 C 0.101 3.899 17 N -0.425 5.425 18 C -0.194 4.194 19 C -0.588 4.588 20 S 0.381 5.619 21 H 0.111 0.889 22 H 0.135 0.865 23 H 0.133 0.867 24 H 0.128 0.872 25 H 0.219 0.781 26 H 0.224 0.776 27 H 0.147 0.853 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.304 -5.719 0.129 6.167 hybrid contribution 0.796 -0.438 0.012 0.909 sum 3.100 -6.157 0.141 6.895 Atomic orbital electron populations 1.68779 1.07699 1.30747 1.33913 1.26166 0.95103 1.02651 0.92795 0.85673 0.80480 0.78543 0.78842 1.17940 1.19401 1.19403 1.19001 0.95786 0.87354 1.39703 0.87890 1.23858 0.91361 0.94059 0.95867 1.67260 1.34670 0.97038 1.31943 1.18756 0.88604 0.91756 1.01838 1.18270 0.92021 0.90921 0.93743 1.20954 0.99276 0.91863 1.06820 1.20649 0.94729 0.95952 0.98556 1.20425 0.93060 0.97086 1.13154 1.17714 0.84275 0.93359 0.94510 1.42383 1.04284 1.09883 1.85916 1.20762 0.96250 0.93941 1.08438 1.26461 0.99286 1.04216 1.28825 1.84192 1.11567 0.94132 1.71966 0.88923 0.86498 0.86729 0.87194 0.78117 0.77636 0.85339 0.84851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.70 10.64 55.56 0.59 -18.11 15 2 C 0.05 1.28 5.50 -17.29 -0.10 1.19 15 3 Si 0.94 17.41 29.56 -169.99 -5.03 12.38 15 4 H -0.26 -4.70 7.11 56.52 0.40 -4.30 15 5 H -0.27 -4.86 7.11 56.52 0.40 -4.46 15 6 H -0.27 -4.86 7.11 56.52 0.40 -4.46 15 7 C -0.38 -9.75 9.44 -38.24 -0.36 -10.11 15 8 H 0.10 2.58 7.85 -52.49 -0.41 2.17 15 9 C 0.20 5.59 7.11 -17.04 -0.12 5.46 15 10 N -0.59 -16.15 10.02 -9.50 -0.10 -16.24 15 11 C 0.13 3.31 6.65 -84.39 -0.56 2.75 15 12 C 0.05 1.19 5.88 -104.91 -0.62 0.58 15 13 C -0.17 -3.20 9.48 -39.18 -0.37 -3.57 15 14 C -0.08 -1.28 10.03 -39.66 -0.40 -1.68 15 15 C -0.21 -3.30 9.89 -39.29 -0.39 -3.69 15 16 C 0.20 3.40 6.75 -83.83 -0.57 2.83 15 17 N -0.88 -11.11 9.09 32.39 0.29 -10.82 15 18 C -0.17 -3.45 9.47 -39.01 -0.37 -3.82 15 19 C -0.44 -11.03 10.41 30.36 0.32 -10.71 15 20 S 0.12 3.10 20.12 -107.50 -2.16 0.93 15 21 H 0.30 6.33 8.29 -40.82 -0.34 5.99 15 22 H 0.12 2.13 6.62 -52.49 -0.35 1.78 15 23 H 0.11 1.47 8.06 -52.49 -0.42 1.05 15 24 H 0.11 1.38 8.06 -52.49 -0.42 0.95 15 25 H 0.39 3.82 8.84 -40.82 -0.36 3.46 15 26 H 0.40 4.56 8.84 -40.82 -0.36 4.20 15 27 H 0.13 2.72 7.68 -52.49 -0.40 2.32 15 28 H 0.13 3.00 6.87 -52.49 -0.36 2.64 15 LS Contribution 262.45 15.07 3.96 3.96 Total: -1.00 -29.12 262.45 -8.20 -37.32 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -2.22 Total: 11.34 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: -3.53 Total: -20.76 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.79 Total: -45.17 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.03 Total: 12.38 kcal Atomic # 16 Polarization: 3.10 SS G_CDS: -2.16 Total: 0.93 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.12 -8.20 -37.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040420636.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.406 kcal (2) G-P(sol) polarization free energy of solvation -29.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds