Wall clock time and date at job start Mon Mar 30 2020 05:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30734 * 1 3 3 Si 1.86798 * 119.99633 * 2 1 4 4 H 1.48506 * 109.46985 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 299.99861 * 3 2 1 6 6 H 1.48506 * 109.47035 * 60.00276 * 3 2 1 7 7 C 1.40176 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99578 * 179.97438 * 7 2 1 9 9 C 1.39877 * 119.99842 * 0.27846 * 7 2 1 10 10 N 1.31585 * 125.28962 * 179.71918 * 9 7 2 11 11 C 1.31245 * 115.81793 * 179.97438 * 10 9 7 12 12 C 1.48214 * 122.47339 * 180.02562 * 11 10 9 13 13 C 1.39527 * 120.09602 * 184.97416 * 12 11 10 14 14 C 1.38011 * 120.01375 * 180.02562 * 13 12 11 15 15 C 1.38246 * 120.21238 * 359.96290 * 14 13 12 16 16 C 1.39005 * 120.19082 * 0.02562 * 15 14 13 17 17 N 1.39691 * 120.00800 * 180.02562 * 16 15 14 18 18 C 1.38688 * 119.98240 * 359.74571 * 16 15 14 19 19 C 1.37224 * 115.05280 * 0.02562 * 11 10 9 20 20 S 1.70999 * 109.08015 * 359.76607 * 19 11 10 21 21 H 0.96996 * 120.00367 * 359.97438 * 1 2 3 22 22 H 1.07993 * 119.99189 * 0.02562 * 13 12 11 23 23 H 1.08000 * 119.88883 * 179.97438 * 14 13 12 24 24 H 1.07996 * 119.90480 * 180.02562 * 15 14 13 25 25 H 0.97003 * 119.99857 * 0.02562 * 17 16 15 26 26 H 0.96996 * 119.99949 * 179.97438 * 17 16 15 27 27 H 1.07994 * 120.10316 * 180.25915 * 18 16 15 28 28 H 1.08001 * 125.45659 * 180.02562 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 3.7013 1.3465 0.0006 5 1 1.8825 2.3964 -1.2125 6 1 1.8824 2.3964 1.2126 7 6 2.0082 -1.2140 0.0005 8 1 3.0882 -1.2139 0.0001 9 6 1.3088 -2.4253 -0.0048 10 7 1.8589 -3.6207 -0.0101 11 6 1.0245 -4.6338 -0.0141 12 6 1.4838 -6.0429 -0.0197 13 6 0.5573 -7.0804 -0.1284 14 6 0.9868 -8.3920 -0.1329 15 6 2.3344 -8.6830 -0.0308 16 6 3.2650 -7.6562 0.0777 17 7 4.6259 -7.9546 0.1802 18 6 2.8426 -6.3352 0.0783 19 6 -0.3045 -4.2920 -0.0126 20 16 -0.4434 -2.5878 0.0008 21 1 -0.4850 0.8400 0.0004 22 1 -0.4962 -6.8571 -0.2090 23 1 0.2678 -9.1935 -0.2167 24 1 2.6651 -9.7111 -0.0352 25 1 4.9215 -8.8784 0.1753 26 1 5.2752 -7.2379 0.2555 27 1 3.5643 -5.5358 0.1582 28 1 -1.1303 -4.9880 -0.0149 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040420636.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:45 Heat of formation + Delta-G solvation = 18.022628 kcal Electronic energy + Delta-G solvation = -14386.713523 eV Core-core repulsion = 11912.901856 eV Total energy + Delta-G solvation = -2473.811667 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.43893 -38.95678 -36.09167 -35.21774 -32.38394 -30.55626 -29.43560 -27.94238 -25.10961 -23.38912 -22.43729 -20.18892 -19.69991 -17.94531 -17.64496 -17.02640 -16.80658 -16.55625 -15.44715 -14.88693 -14.62171 -14.58461 -14.20732 -14.09872 -13.91103 -13.51699 -12.98022 -12.58307 -12.31684 -11.99338 -11.94960 -11.67424 -11.37338 -11.28270 -10.11309 -9.82632 -9.80381 -8.90561 -8.82939 -8.32884 -6.72177 0.12820 0.74456 0.86413 1.39487 1.50981 1.53514 1.59504 1.99801 2.18907 2.31951 2.99301 3.08031 3.40098 3.88445 4.13367 4.32960 4.53698 4.72042 4.80842 4.95477 4.96588 5.03271 5.30411 5.40679 5.60286 5.71345 5.88188 5.97278 6.07264 6.39413 6.44689 6.65114 7.09514 7.76955 8.01745 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.037508 B = 0.005852 C = 0.005074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.325494 B = 4783.153186 C = 5517.264863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.020 3.980 3 Si 1.020 2.980 4 H -0.255 1.255 5 H -0.256 1.256 6 H -0.256 1.256 7 C -0.401 4.401 8 H 0.101 0.899 9 C 0.168 3.832 10 N -0.618 5.618 11 C 0.119 3.881 12 C 0.013 3.987 13 C -0.181 4.181 14 C -0.069 4.069 15 C -0.201 4.201 16 C 0.210 3.790 17 N -0.868 5.868 18 C -0.194 4.194 19 C -0.463 4.463 20 S 0.106 5.894 21 H 0.313 0.687 22 H 0.117 0.883 23 H 0.155 0.845 24 H 0.153 0.847 25 H 0.410 0.590 26 H 0.401 0.599 27 H 0.104 0.896 28 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.643 -7.710 0.089 8.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.200 4.200 3 Si 0.838 3.162 4 H -0.179 1.179 5 H -0.180 1.180 6 H -0.180 1.180 7 C -0.443 4.443 8 H 0.119 0.881 9 C -0.084 4.084 10 N -0.341 5.341 11 C -0.019 4.019 12 C 0.010 3.990 13 C -0.202 4.202 14 C -0.087 4.087 15 C -0.224 4.224 16 C 0.105 3.895 17 N -0.409 5.409 18 C -0.218 4.218 19 C -0.607 4.607 20 S 0.366 5.634 21 H 0.126 0.874 22 H 0.135 0.865 23 H 0.173 0.827 24 H 0.170 0.830 25 H 0.240 0.760 26 H 0.230 0.770 27 H 0.122 0.878 28 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.051 -6.886 0.098 7.532 hybrid contribution 0.622 -0.193 0.024 0.652 sum 3.673 -7.079 0.122 7.976 Atomic orbital electron populations 1.68800 1.09091 1.32709 1.32162 1.27224 0.95949 1.05597 0.91256 0.84557 0.78757 0.73270 0.79632 1.17881 1.18034 1.18025 1.19373 0.96059 0.88273 1.40613 0.88071 1.24366 0.92487 0.94868 0.96723 1.67320 1.35646 0.97580 1.33543 1.19372 0.88835 0.93308 1.00371 1.18391 0.93601 0.89821 0.97159 1.21071 0.98857 0.92699 1.07622 1.21084 0.96013 0.95396 0.96209 1.20917 0.92469 0.98599 1.10446 1.17768 0.86239 0.92172 0.93342 1.42333 1.02841 1.11295 1.84445 1.20642 0.95272 0.95272 1.10660 1.26585 0.99781 1.03924 1.30386 1.83887 1.10863 0.95338 1.73342 0.87406 0.86485 0.82694 0.82974 0.75964 0.77041 0.87771 0.83171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.41 10.64 21.87 0.23 -38.18 15 2 C 0.02 0.93 5.50 85.33 0.47 1.40 15 3 Si 1.02 34.84 29.56 68.60 2.03 36.86 15 4 H -0.26 -8.64 7.11 99.48 0.71 -7.93 15 5 H -0.26 -8.22 7.11 99.48 0.71 -7.51 15 6 H -0.26 -8.21 7.11 99.48 0.71 -7.51 15 7 C -0.40 -21.51 9.44 23.14 0.22 -21.29 15 8 H 0.10 5.28 7.85 -2.91 -0.02 5.26 15 9 C 0.17 9.73 7.11 85.13 0.61 10.34 15 10 N -0.62 -35.95 10.02 -183.96 -1.84 -37.79 15 11 C 0.12 6.43 6.65 41.65 0.28 6.71 15 12 C 0.01 0.62 5.88 -20.05 -0.12 0.50 15 13 C -0.18 -6.81 9.48 22.53 0.21 -6.60 15 14 C -0.07 -1.97 10.03 22.22 0.22 -1.75 15 15 C -0.20 -5.41 9.89 22.46 0.22 -5.19 15 16 C 0.21 6.58 6.75 38.18 0.26 6.84 15 17 N -0.87 -19.63 9.09 -51.44 -0.47 -20.09 15 18 C -0.19 -8.04 9.47 22.64 0.21 -7.83 15 19 C -0.46 -24.09 10.41 67.58 0.70 -23.38 15 20 S 0.11 5.68 20.12 -56.49 -1.14 4.54 15 21 H 0.31 13.07 8.29 -92.71 -0.77 12.30 15 22 H 0.12 4.26 6.62 -2.91 -0.02 4.24 15 23 H 0.16 3.20 8.06 -2.91 -0.02 3.18 15 24 H 0.15 2.86 8.06 -2.91 -0.02 2.84 15 25 H 0.41 6.44 8.84 -92.71 -0.82 5.62 15 26 H 0.40 8.62 8.84 -92.71 -0.82 7.80 15 27 H 0.10 4.69 7.68 -2.91 -0.02 4.67 15 28 H 0.15 7.01 6.87 -2.91 -0.02 6.99 15 Total: -1.00 -66.66 262.45 1.68 -64.98 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: -0.42 Total: 29.94 kcal Atomic # 6 Polarization: -43.55 SS G_CDS: 3.29 Total: -40.26 kcal Atomic # 7 Polarization: -93.98 SS G_CDS: -2.08 Total: -96.06 kcal Atomic # 14 Polarization: 34.84 SS G_CDS: 2.03 Total: 36.86 kcal Atomic # 16 Polarization: 5.68 SS G_CDS: -1.14 Total: 4.54 kcal Total: -66.66 1.68 -64.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040420636.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.003 kcal (2) G-P(sol) polarization free energy of solvation -66.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds