Wall clock time and date at job start Mon Mar 30 2020 05:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30752 * 1 3 3 Si 1.86802 * 119.99469 * 2 1 4 4 H 1.48500 * 109.47435 * 274.98383 * 3 2 1 5 5 H 1.48500 * 109.47412 * 34.99329 * 3 2 1 6 6 H 1.48507 * 109.46587 * 154.98735 * 3 2 1 7 7 C 1.40139 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99797 * 173.23841 * 7 2 1 9 9 C 1.39839 * 120.00020 * 353.51271 * 7 2 1 10 10 N 1.31603 * 125.28030 * 186.27014 * 9 7 2 11 11 C 1.31276 * 115.81419 * 179.97438 * 10 9 7 12 12 C 1.48087 * 122.48395 * 180.02562 * 11 10 9 13 13 C 1.39437 * 120.16946 * 132.36266 * 12 11 10 14 14 C 1.37954 * 119.93236 * 179.72378 * 13 12 11 15 15 C 1.38472 * 120.29920 * 0.57656 * 14 13 12 16 16 C 1.38131 * 120.35900 * 359.69802 * 15 14 13 17 17 C 1.38776 * 120.05387 * 0.02562 * 16 15 14 18 18 N 1.39387 * 120.15109 * 179.97438 * 17 16 15 19 19 C 1.37327 * 115.02784 * 0.02562 * 11 10 9 20 20 S 1.71000 * 109.07735 * 359.76257 * 19 11 10 21 21 H 0.96992 * 120.00299 * 359.97438 * 1 2 3 22 22 H 1.07997 * 120.03271 * 0.02562 * 13 12 11 23 23 H 1.08000 * 119.84579 * 180.29562 * 14 13 12 24 24 H 1.08003 * 119.82063 * 179.71575 * 15 14 13 25 25 H 1.08004 * 119.97990 * 180.02562 * 16 15 14 26 26 H 0.96995 * 120.00163 * 184.14220 * 18 17 16 27 27 H 0.97000 * 119.99517 * 4.14284 * 18 17 16 28 28 H 1.08003 * 125.45901 * 180.02562 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3835 2.1074 -1.3948 5 1 1.4955 2.6200 0.8029 6 1 3.5877 1.4121 0.5920 7 6 2.0082 -1.2136 -0.0005 8 1 3.0827 -1.2168 -0.1107 9 6 1.3158 -2.4209 0.1357 10 7 1.8728 -3.6061 0.2658 11 6 1.0440 -4.6176 0.3813 12 6 1.5107 -6.0145 0.5358 13 6 0.9633 -6.8308 1.5249 14 6 1.3976 -8.1332 1.6609 15 6 2.3843 -8.6312 0.8267 16 6 2.9390 -7.8316 -0.1535 17 6 2.5091 -6.5210 -0.3071 18 7 3.0679 -5.7121 -1.2952 19 6 -0.2878 -4.2842 0.3482 20 16 -0.4355 -2.5904 0.1662 21 1 -0.4850 0.8400 0.0004 22 1 0.1967 -6.4454 2.1807 23 1 0.9693 -8.7657 2.4243 24 1 2.7217 -9.6506 0.9429 25 1 3.7079 -8.2265 -0.8011 26 1 2.8095 -4.7796 -1.3620 27 1 3.7150 -6.0819 -1.9160 28 1 -1.1100 -4.9799 0.4287 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040887302.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:01 Heat of formation + Delta-G solvation = 20.233622 kcal Electronic energy + Delta-G solvation = -14657.964946 eV Core-core repulsion = 12184.249155 eV Total energy + Delta-G solvation = -2473.715791 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.53773 -38.75098 -35.99340 -35.21937 -32.57477 -30.38881 -29.26873 -28.03155 -25.12794 -22.98398 -22.72956 -20.13458 -19.67432 -18.00298 -17.78202 -17.18559 -16.79233 -16.31308 -15.26228 -14.86447 -14.70885 -14.43842 -14.25985 -14.10512 -13.86159 -13.51365 -12.94340 -12.48150 -12.35285 -12.09280 -12.01307 -11.45785 -11.40855 -11.25428 -9.96943 -9.84670 -9.72142 -9.04533 -8.89963 -8.19579 -6.71136 0.32383 0.74103 0.85864 1.39630 1.50482 1.54197 1.58752 2.03292 2.19532 2.27806 3.00177 3.18812 3.25212 3.97202 4.13515 4.31229 4.64977 4.67774 4.80110 4.92148 4.96472 5.18079 5.31058 5.42987 5.67199 5.70737 5.83324 5.92493 6.13137 6.39273 6.46545 6.69862 7.10425 7.76461 8.00937 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.040651 B = 0.006270 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.618444 B = 4464.805524 C = 4901.288970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.021 3.979 3 Si 1.018 2.982 4 H -0.254 1.254 5 H -0.259 1.259 6 H -0.257 1.257 7 C -0.398 4.398 8 H 0.104 0.896 9 C 0.172 3.828 10 N -0.615 5.615 11 C 0.146 3.854 12 C -0.121 4.121 13 C -0.075 4.075 14 C -0.186 4.186 15 C -0.069 4.069 16 C -0.210 4.210 17 C 0.221 3.779 18 N -0.867 5.867 19 C -0.477 4.477 20 S 0.095 5.905 21 H 0.312 0.688 22 H 0.110 0.890 23 H 0.145 0.855 24 H 0.157 0.843 25 H 0.144 0.856 26 H 0.399 0.601 27 H 0.402 0.598 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.289 -5.894 -0.615 6.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.200 4.200 3 Si 0.836 3.164 4 H -0.178 1.178 5 H -0.183 1.183 6 H -0.180 1.180 7 C -0.440 4.440 8 H 0.122 0.878 9 C -0.080 4.080 10 N -0.338 5.338 11 C 0.007 3.993 12 C -0.128 4.128 13 C -0.094 4.094 14 C -0.206 4.206 15 C -0.088 4.088 16 C -0.232 4.232 17 C 0.113 3.887 18 N -0.407 5.407 19 C -0.620 4.620 20 S 0.353 5.647 21 H 0.125 0.875 22 H 0.129 0.871 23 H 0.162 0.838 24 H 0.175 0.825 25 H 0.162 0.838 26 H 0.230 0.770 27 H 0.232 0.768 28 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.711 -5.087 -0.686 5.805 hybrid contribution 0.229 0.032 -0.113 0.258 sum 2.940 -5.055 -0.800 5.903 Atomic orbital electron populations 1.68864 1.09110 1.32703 1.31810 1.27199 0.95884 1.05599 0.91326 0.84613 0.78558 0.73268 0.79976 1.17823 1.18332 1.18015 1.19330 0.96530 0.88371 1.39791 0.87841 1.24320 0.92131 0.95010 0.96491 1.67412 1.35120 0.97720 1.33571 1.19128 0.88509 0.92815 0.98843 1.18183 1.01402 0.91747 1.01492 1.21075 0.98341 0.94394 0.95635 1.21047 1.01439 0.94813 1.03257 1.21277 0.94386 1.00126 0.92973 1.20822 1.05903 0.92082 1.04439 1.18107 0.90616 0.91378 0.88560 1.42664 1.49388 1.13716 1.34883 1.26457 0.99623 1.03723 1.32231 1.83941 1.11303 0.96265 1.73152 0.87520 0.87141 0.83769 0.82538 0.83819 0.76999 0.76833 0.84528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.67 10.67 21.86 0.23 -37.44 15 2 C 0.02 0.94 5.49 85.32 0.47 1.41 15 3 Si 1.02 34.13 29.57 68.60 2.03 36.16 15 4 H -0.25 -8.06 7.11 99.48 0.71 -7.35 15 5 H -0.26 -8.15 7.11 99.48 0.71 -7.45 15 6 H -0.26 -8.56 7.11 99.48 0.71 -7.86 15 7 C -0.40 -20.58 9.43 23.12 0.22 -20.36 15 8 H 0.10 5.16 7.86 -2.91 -0.02 5.14 15 9 C 0.17 9.58 7.10 85.11 0.60 10.18 15 10 N -0.61 -33.74 8.96 -184.00 -1.65 -35.39 15 11 C 0.15 7.56 5.73 41.63 0.24 7.79 15 12 C -0.12 -5.39 5.73 -19.91 -0.11 -5.50 15 13 C -0.07 -2.86 9.56 22.49 0.22 -2.64 15 14 C -0.19 -5.51 10.03 22.26 0.22 -5.29 15 15 C -0.07 -1.83 10.03 22.30 0.22 -1.61 15 16 C -0.21 -6.32 9.88 22.37 0.22 -6.10 15 17 C 0.22 8.60 6.76 38.53 0.26 8.86 15 18 N -0.87 -32.19 8.97 -50.87 -0.46 -32.65 15 19 C -0.48 -24.72 10.74 67.61 0.73 -24.00 15 20 S 0.09 4.99 20.15 -56.49 -1.14 3.85 15 21 H 0.31 12.91 8.29 -92.71 -0.77 12.14 15 22 H 0.11 4.21 8.05 -2.91 -0.02 4.19 15 23 H 0.14 3.30 8.06 -2.91 -0.02 3.28 15 24 H 0.16 2.81 8.06 -2.91 -0.02 2.79 15 25 H 0.14 3.38 8.06 -2.91 -0.02 3.36 15 26 H 0.40 17.34 6.47 -92.71 -0.60 16.74 15 27 H 0.40 11.54 8.84 -92.71 -0.82 10.72 15 28 H 0.14 6.63 8.06 -2.91 -0.02 6.61 15 Total: -1.00 -62.50 261.86 2.10 -60.40 By element: Atomic # 1 Polarization: 42.53 SS G_CDS: -0.21 Total: 42.32 kcal Atomic # 6 Polarization: -40.54 SS G_CDS: 3.29 Total: -37.25 kcal Atomic # 7 Polarization: -103.60 SS G_CDS: -1.87 Total: -105.47 kcal Atomic # 14 Polarization: 34.13 SS G_CDS: 2.03 Total: 36.16 kcal Atomic # 16 Polarization: 4.99 SS G_CDS: -1.14 Total: 3.85 kcal Total: -62.50 2.10 -60.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040887302.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.635 kcal (2) G-P(sol) polarization free energy of solvation -62.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds