Wall clock time and date at job start Mon Mar 30 2020 06:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36454 * 119.90861 * 2 1 4 4 C 1.40812 * 119.80948 * 179.97438 * 3 2 1 5 5 C 1.41218 * 120.17816 * 179.97438 * 4 3 2 6 6 H 1.08004 * 120.00239 * 150.16117 * 5 4 3 7 7 C 1.39890 * 119.99794 * 330.15205 * 5 4 3 8 8 N 1.30884 * 119.99854 * 161.71102 * 7 5 4 9 9 Si 1.86803 * 120.00093 * 341.71395 * 7 5 4 10 10 H 1.48498 * 109.46817 * 95.41461 * 9 7 5 11 11 H 1.48494 * 109.46997 * 215.41307 * 9 7 5 12 12 H 1.48500 * 109.46981 * 335.41355 * 9 7 5 13 13 C 1.40861 * 119.64342 * 359.70809 * 4 3 2 14 14 C 1.36418 * 119.80582 * 0.56603 * 13 4 3 15 15 C 1.39297 * 119.90210 * 179.97438 * 2 1 3 16 16 O 1.35669 * 119.82141 * 0.02610 * 15 2 1 17 17 C 1.42902 * 117.00072 * 180.02562 * 16 15 2 18 18 F 1.39900 * 109.47197 * 59.99686 * 17 16 15 19 19 F 1.39902 * 109.46789 * 179.97438 * 17 16 15 20 20 F 1.39895 * 109.47034 * 299.99473 * 17 16 15 21 21 H 1.08993 * 109.46886 * 270.02391 * 1 2 3 22 22 H 1.08997 * 109.46545 * 30.02725 * 1 2 3 23 23 H 1.08999 * 109.47083 * 150.02073 * 1 2 3 24 24 H 1.07994 * 120.09604 * 359.95609 * 3 2 1 25 25 H 0.96999 * 119.99839 * 180.02562 * 8 7 5 26 26 H 1.07997 * 120.09533 * 180.31766 * 13 4 3 27 27 H 1.08007 * 119.90271 * 179.73137 * 14 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1875 1.1828 0.0000 4 6 3.5956 1.1804 0.0005 5 6 4.3076 2.3999 0.0000 6 1 5.2803 2.4576 0.4657 7 6 3.7530 3.5333 -0.6039 8 7 4.2134 4.7228 -0.3103 9 14 2.3552 3.3492 -1.8294 10 1 1.0575 3.5328 -1.1313 11 1 2.4932 4.3738 -2.8953 12 1 2.4038 1.9945 -2.4358 13 6 4.2901 -0.0451 0.0073 14 6 3.5948 -1.2187 0.0016 15 6 2.2015 -1.2075 0.0005 16 8 1.5175 -2.3792 0.0005 17 6 2.2900 -3.5814 0.0017 18 9 3.0961 -3.6167 1.1446 19 9 1.4323 -4.6867 0.0021 20 9 3.0977 -3.6178 -1.1400 21 1 -0.3633 0.0004 1.0276 22 1 -0.3632 0.8897 -0.5143 23 1 -0.3633 -0.8902 -0.5135 24 1 1.6476 2.1181 -0.0007 25 1 3.8286 5.5087 -0.7288 26 1 5.3700 -0.0554 0.0130 27 1 4.1258 -2.1592 0.0024 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044369793.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:31 Heat of formation + Delta-G solvation = -187.440872 kcal Electronic energy + Delta-G solvation = -17948.144136 eV Core-core repulsion = 14448.520541 eV Total energy + Delta-G solvation = -3499.623595 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.01321 -47.78446 -47.57385 -39.27360 -36.91439 -33.68159 -32.05270 -30.11726 -26.22816 -26.03600 -24.42242 -21.90264 -20.34281 -19.05677 -18.69732 -18.40477 -17.31988 -15.92809 -15.40978 -14.69714 -14.64810 -14.38119 -14.21297 -14.09385 -13.91841 -13.71707 -13.37169 -13.04495 -12.96271 -12.56681 -12.35929 -12.28252 -11.61513 -11.57742 -10.91609 -10.62635 -10.31184 -10.15175 -9.71129 -9.24688 -7.91559 -7.48975 -7.08555 -4.58790 2.15095 2.31682 2.42361 3.01395 3.12843 3.23646 3.42672 3.87818 4.21920 4.31138 4.49122 5.19507 5.53602 5.67009 5.86316 6.01946 6.15509 6.38692 6.40784 6.60160 6.69615 7.05501 7.20241 7.30715 7.54250 7.67062 7.91137 8.18770 8.46986 8.63916 9.93037 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.039733 B = 0.007261 C = 0.006658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.535127 B = 3855.413440 C = 4204.386688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.035 4.035 3 C -0.218 4.218 4 C 0.084 3.916 5 C -0.438 4.438 6 H 0.094 0.906 7 C 0.084 3.916 8 N -0.800 5.800 9 Si 0.908 3.092 10 H -0.267 1.267 11 H -0.288 1.288 12 H -0.242 1.242 13 C -0.181 4.181 14 C -0.133 4.133 15 C -0.053 4.053 16 O -0.311 6.311 17 C 0.600 3.400 18 F -0.174 7.174 19 F -0.148 7.148 20 F -0.174 7.174 21 H 0.063 0.937 22 H 0.058 0.942 23 H 0.061 0.939 24 H 0.113 0.887 25 H 0.288 0.712 26 H 0.110 0.890 27 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.687 -9.568 -0.867 10.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.036 4.036 3 C -0.238 4.238 4 C 0.081 3.919 5 C -0.466 4.466 6 H 0.112 0.888 7 C -0.136 4.136 8 N -0.424 5.424 9 Si 0.734 3.266 10 H -0.193 1.193 11 H -0.215 1.215 12 H -0.165 1.165 13 C -0.200 4.200 14 C -0.152 4.152 15 C -0.094 4.094 16 O -0.232 6.232 17 C 0.508 3.492 18 F -0.156 7.156 19 F -0.130 7.130 20 F -0.156 7.156 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.131 0.869 25 H 0.098 0.902 26 H 0.128 0.872 27 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.798 -9.310 -0.873 10.510 hybrid contribution -0.224 -0.184 -0.476 0.558 sum -5.022 -9.494 -1.349 10.825 Atomic orbital electron populations 1.20651 0.92347 1.01731 1.01647 1.18482 0.94650 0.89753 1.00705 1.20534 0.94405 0.95323 1.13496 1.17772 0.91326 0.93303 0.89470 1.19483 1.04998 0.91299 1.30781 0.88821 1.26200 0.96887 0.94206 0.96354 1.69712 1.38327 0.99235 1.35087 0.86343 0.80253 0.80023 0.79959 1.19321 1.21536 1.16533 1.20606 0.98554 0.91258 1.09621 1.20761 0.91730 0.99042 1.03626 1.17968 0.90231 0.81186 1.19992 1.86177 1.34389 1.11821 1.90785 1.19432 0.74822 0.80355 0.74581 1.93254 1.74148 1.96343 1.51832 1.93223 1.71451 1.51867 1.96427 1.93254 1.74063 1.96339 1.51941 0.91795 0.92314 0.91978 0.86943 0.90196 0.87234 0.87506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.89 9.78 36.01 0.35 -1.54 15 2 C -0.04 -0.76 5.86 -104.87 -0.61 -1.37 15 3 C -0.22 -5.09 6.75 -39.25 -0.26 -5.36 15 4 C 0.08 2.07 5.10 -106.80 -0.55 1.53 15 5 C -0.44 -11.36 9.56 -37.83 -0.36 -11.72 15 6 H 0.09 2.53 8.06 -52.48 -0.42 2.11 15 7 C 0.08 2.10 5.40 -17.34 -0.09 2.01 15 8 N -0.80 -20.50 13.93 55.54 0.77 -19.72 15 9 Si 0.91 19.93 24.52 -169.99 -4.17 15.76 15 10 H -0.27 -5.62 6.70 56.52 0.38 -5.24 15 11 H -0.29 -6.10 7.11 56.52 0.40 -5.70 15 12 H -0.24 -5.49 6.87 56.52 0.39 -5.10 15 13 C -0.18 -4.12 9.75 -39.25 -0.38 -4.50 15 14 C -0.13 -2.83 8.18 -39.83 -0.33 -3.16 15 15 C -0.05 -1.13 6.48 -38.78 -0.25 -1.38 15 16 O -0.31 -5.94 9.39 -18.71 -0.18 -6.12 15 17 C 0.60 9.98 3.42 101.05 0.35 10.33 15 18 F -0.17 -2.89 15.54 2.25 0.03 -2.85 15 19 F -0.15 -2.19 17.53 2.25 0.04 -2.15 15 20 F -0.17 -2.91 15.54 2.25 0.04 -2.87 15 21 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 22 H 0.06 0.97 8.08 -51.93 -0.42 0.55 15 23 H 0.06 1.03 7.52 -51.93 -0.39 0.64 15 24 H 0.11 2.58 4.73 -52.49 -0.25 2.33 15 25 H 0.29 6.65 8.30 -40.82 -0.34 6.31 15 26 H 0.11 2.32 8.06 -52.49 -0.42 1.89 15 27 H 0.11 2.06 5.06 -52.48 -0.27 1.79 15 LS Contribution 245.35 15.07 3.70 3.70 Total: -1.00 -25.57 245.35 -3.67 -29.24 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -1.76 Total: 0.18 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -2.14 Total: -15.15 kcal Atomic # 7 Polarization: -20.50 SS G_CDS: 0.77 Total: -19.72 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -0.18 Total: -6.12 kcal Atomic # 9 Polarization: -7.99 SS G_CDS: 0.11 Total: -7.88 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.17 Total: 15.76 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -25.57 -3.67 -29.24 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044369793.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.204 kcal (2) G-P(sol) polarization free energy of solvation -25.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds