Wall clock time and date at job start Mon Mar 30 2020 05:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30916 * 1 3 3 Si 1.86799 * 120.00086 * 2 1 4 4 H 1.48492 * 109.47138 * 239.99834 * 3 2 1 5 5 H 1.48494 * 109.47192 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46979 * 120.00025 * 3 2 1 7 7 C 1.39828 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99970 * 197.96238 * 7 2 1 9 9 C 1.41124 * 120.00088 * 17.97100 * 7 2 1 10 10 C 1.40886 * 120.15690 * 204.61192 * 9 7 2 11 11 C 1.36333 * 119.82779 * 180.02562 * 10 9 7 12 12 C 1.39523 * 120.16789 * 359.97438 * 11 10 9 13 13 N 1.39212 * 119.83724 * 179.97438 * 12 11 10 14 14 C 1.38577 * 125.98578 * 129.99851 * 13 12 11 15 15 C 1.33030 * 107.90136 * 180.02562 * 14 13 12 16 16 N 1.38552 * 107.90001 * 359.97438 * 15 14 13 17 17 H 0.96998 * 125.97529 * 179.73650 * 16 15 14 18 18 C 1.34755 * 108.04634 * 0.02562 * 16 15 14 19 19 S 1.71198 * 125.93882 * 179.97438 * 18 16 15 20 20 C 1.39520 * 120.32671 * 0.27210 * 12 11 10 21 21 C 1.36334 * 120.16463 * 359.48848 * 20 12 11 22 22 H 0.97004 * 120.00199 * 359.97438 * 1 2 3 23 23 H 1.07997 * 120.08646 * 359.97438 * 10 9 7 24 24 H 1.08003 * 119.92007 * 179.97438 * 11 10 9 25 25 H 1.08005 * 126.05250 * 0.07059 * 14 13 12 26 26 H 1.07997 * 126.04996 * 179.97438 * 15 14 13 27 27 H 1.08000 * 119.91722 * 179.74562 * 20 12 11 28 28 H 1.07998 * 120.08752 * 180.25157 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 3.0969 1.6963 -1.2124 5 1 1.2782 2.7464 0.0006 6 1 3.0970 1.6963 1.2126 7 6 2.0082 -1.2110 0.0005 8 1 3.0487 -1.2337 0.2890 9 6 1.3542 -2.4035 -0.3760 10 6 1.8263 -3.6468 0.0889 11 6 1.1897 -4.7947 -0.2795 12 6 0.0730 -4.7402 -1.1142 13 7 -0.5715 -5.9167 -1.4865 14 6 -1.9330 -6.1607 -1.4031 15 6 -2.1558 -7.3931 -1.8517 16 7 -0.9372 -7.9380 -2.2228 17 1 -0.7967 -8.8279 -2.5823 18 6 0.0195 -7.0178 -1.9909 19 16 1.6945 -7.2135 -2.2856 20 6 -0.3972 -3.5130 -1.5827 21 6 0.2262 -2.3564 -1.2188 22 1 -0.4850 0.8401 0.0004 23 1 2.6908 -3.6905 0.7347 24 1 1.5506 -5.7487 0.0757 25 1 -2.6811 -5.4719 -1.0391 26 1 -3.1165 -7.8823 -1.9153 27 1 -1.2597 -3.4789 -2.2318 28 1 -0.1413 -1.4069 -1.5789 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051601657.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:38 Heat of formation + Delta-G solvation = 79.356300 kcal Electronic energy + Delta-G solvation = -14737.737322 eV Core-core repulsion = 12266.585283 eV Total energy + Delta-G solvation = -2471.152039 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.29204 -37.86177 -34.86724 -33.23431 -30.53496 -29.86265 -29.07450 -25.73854 -23.14807 -22.20048 -20.90660 -20.74963 -19.02405 -17.55467 -16.17933 -15.63408 -15.45871 -15.28333 -14.63590 -14.10055 -13.65387 -13.41759 -12.87235 -12.28661 -12.03511 -11.75634 -11.26942 -11.09946 -10.81411 -10.71912 -10.63340 -10.06924 -9.65335 -9.58970 -9.27702 -7.81360 -7.63288 -7.06091 -6.94426 -6.78855 -4.58743 1.70544 2.01184 2.24165 2.60748 2.94264 2.96077 2.98334 3.07159 3.23538 3.35075 3.75697 4.34483 4.96921 5.20165 5.33602 5.43208 5.65609 5.99467 6.22033 6.60128 6.76543 6.82311 6.84317 7.01297 7.14150 7.24462 7.38145 7.76928 7.79262 7.85328 8.02909 8.35965 8.62137 8.70530 9.88876 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.043812 B = 0.005778 C = 0.005284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.942227 B = 4844.719538 C = 5297.955627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.440 4.440 8 H 0.086 0.914 9 C 0.125 3.875 10 C -0.221 4.221 11 C -0.027 4.027 12 C -0.063 4.063 13 N -0.354 5.354 14 C 0.000 4.000 15 C -0.032 4.032 16 N -0.571 5.571 17 H 0.440 0.560 18 C 0.448 3.552 19 S -0.657 6.657 20 C -0.074 4.074 21 C -0.163 4.163 22 H 0.286 0.714 23 H 0.103 0.897 24 H 0.104 0.896 25 H 0.190 0.810 26 H 0.192 0.808 27 H 0.093 0.907 28 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.309 -5.509 -1.079 10.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.146 4.146 3 Si 0.738 3.262 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.468 4.468 8 H 0.104 0.896 9 C 0.121 3.879 10 C -0.242 4.242 11 C -0.047 4.047 12 C -0.153 4.153 13 N -0.033 5.033 14 C -0.131 4.131 15 C -0.163 4.163 16 N -0.185 5.185 17 H 0.282 0.718 18 C 0.089 3.911 19 S -0.526 6.526 20 C -0.094 4.094 21 C -0.183 4.183 22 H 0.097 0.903 23 H 0.121 0.879 24 H 0.122 0.878 25 H 0.207 0.793 26 H 0.209 0.791 27 H 0.111 0.889 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.412 -5.315 -1.200 9.199 hybrid contribution -0.748 0.351 -0.024 0.826 sum -8.160 -4.965 -1.224 9.629 Atomic orbital electron populations 1.69839 1.07766 1.30059 1.32499 1.26044 0.94850 1.01875 0.91849 0.86247 0.80181 0.79381 0.80406 1.18435 1.20101 1.18655 1.19723 0.98531 0.91171 1.37388 0.89621 1.17764 0.90420 0.92240 0.87450 1.20612 1.04103 0.92064 1.07389 1.20191 0.92665 0.97981 0.93898 1.16862 1.03722 0.80960 1.13755 1.42262 1.05627 1.11638 1.43811 1.22578 0.86592 0.97604 1.06279 1.22247 0.91128 0.94930 1.08008 1.43221 1.05572 1.16300 1.53422 0.71766 1.22958 0.94423 0.83450 0.90230 1.93188 0.91978 1.89732 1.77675 1.20181 0.99098 0.91294 0.98869 1.20872 0.99519 0.96374 1.01547 0.90274 0.87876 0.87783 0.79312 0.79059 0.88935 0.85686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.40 10.96 55.54 0.61 -17.79 15 2 C 0.07 1.72 5.13 -17.35 -0.09 1.63 15 3 Si 0.91 17.37 29.60 -169.99 -5.03 12.34 15 4 H -0.26 -4.97 7.11 56.52 0.40 -4.57 15 5 H -0.28 -5.08 7.11 56.52 0.40 -4.68 15 6 H -0.26 -4.93 7.11 56.52 0.40 -4.53 15 7 C -0.44 -10.96 9.03 -37.89 -0.34 -11.30 15 8 H 0.09 2.05 7.91 -52.49 -0.41 1.63 15 9 C 0.12 3.16 5.57 -106.80 -0.60 2.57 15 10 C -0.22 -5.40 9.74 -39.27 -0.38 -5.78 15 11 C -0.03 -0.64 8.68 -39.79 -0.35 -0.99 15 12 C -0.06 -1.39 5.79 -83.55 -0.48 -1.87 15 13 N -0.35 -6.67 2.85 -61.71 -0.18 -6.85 15 14 C 0.00 0.00 11.17 -16.31 -0.18 -0.18 15 15 C -0.03 -0.33 11.95 -16.32 -0.19 -0.53 15 16 N -0.57 -7.51 6.15 -13.54 -0.08 -7.59 15 17 H 0.44 4.48 8.96 -40.82 -0.37 4.11 15 18 C 0.45 8.51 7.88 -86.95 -0.69 7.82 15 19 S -0.66 -15.41 29.20 -107.50 -3.14 -18.55 15 20 C -0.07 -1.65 9.61 -39.79 -0.38 -2.04 15 21 C -0.16 -3.98 8.64 -39.27 -0.34 -4.32 15 22 H 0.29 6.12 8.30 -40.82 -0.34 5.78 15 23 H 0.10 2.37 8.06 -52.49 -0.42 1.95 15 24 H 0.10 2.44 7.43 -52.48 -0.39 2.05 15 25 H 0.19 2.02 8.06 -52.48 -0.42 1.59 15 26 H 0.19 0.99 8.06 -52.49 -0.42 0.56 15 27 H 0.09 1.82 8.06 -52.49 -0.42 1.40 15 28 H 0.13 3.09 6.16 -52.49 -0.32 2.77 15 LS Contribution 264.25 15.07 3.98 3.98 Total: -1.00 -31.20 264.25 -10.18 -41.38 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -2.32 Total: 8.07 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -4.02 Total: -14.99 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.35 Total: -32.23 kcal Atomic # 14 Polarization: 17.37 SS G_CDS: -5.03 Total: 12.34 kcal Atomic # 16 Polarization: -15.41 SS G_CDS: -3.14 Total: -18.55 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.20 -10.18 -41.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601657.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.736 kcal (2) G-P(sol) polarization free energy of solvation -31.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds