Wall clock time and date at job start Mon Mar 30 2020 05:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30916 * 1 3 3 Si 1.86799 * 120.00086 * 2 1 4 4 H 1.48492 * 109.47138 * 239.99834 * 3 2 1 5 5 H 1.48494 * 109.47192 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46979 * 120.00025 * 3 2 1 7 7 C 1.39828 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99970 * 197.96238 * 7 2 1 9 9 C 1.41124 * 120.00088 * 17.97100 * 7 2 1 10 10 C 1.40886 * 120.15690 * 204.61192 * 9 7 2 11 11 C 1.36333 * 119.82779 * 180.02562 * 10 9 7 12 12 C 1.39523 * 120.16789 * 359.97438 * 11 10 9 13 13 N 1.39212 * 119.83724 * 179.97438 * 12 11 10 14 14 C 1.38577 * 125.98578 * 129.99851 * 13 12 11 15 15 C 1.33030 * 107.90136 * 180.02562 * 14 13 12 16 16 N 1.38552 * 107.90001 * 359.97438 * 15 14 13 17 17 H 0.96998 * 125.97529 * 179.73650 * 16 15 14 18 18 C 1.34755 * 108.04634 * 0.02562 * 16 15 14 19 19 S 1.71198 * 125.93882 * 179.97438 * 18 16 15 20 20 C 1.39520 * 120.32671 * 0.27210 * 12 11 10 21 21 C 1.36334 * 120.16463 * 359.48848 * 20 12 11 22 22 H 0.97004 * 120.00199 * 359.97438 * 1 2 3 23 23 H 1.07997 * 120.08646 * 359.97438 * 10 9 7 24 24 H 1.08003 * 119.92007 * 179.97438 * 11 10 9 25 25 H 1.08005 * 126.05250 * 0.07059 * 14 13 12 26 26 H 1.07997 * 126.04996 * 179.97438 * 15 14 13 27 27 H 1.08000 * 119.91722 * 179.74562 * 20 12 11 28 28 H 1.07998 * 120.08752 * 180.25157 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 3.0969 1.6963 -1.2124 5 1 1.2782 2.7464 0.0006 6 1 3.0970 1.6963 1.2126 7 6 2.0082 -1.2110 0.0005 8 1 3.0487 -1.2337 0.2890 9 6 1.3542 -2.4035 -0.3760 10 6 1.8263 -3.6468 0.0889 11 6 1.1897 -4.7947 -0.2795 12 6 0.0730 -4.7402 -1.1142 13 7 -0.5715 -5.9167 -1.4865 14 6 -1.9330 -6.1607 -1.4031 15 6 -2.1558 -7.3931 -1.8517 16 7 -0.9372 -7.9380 -2.2228 17 1 -0.7967 -8.8279 -2.5823 18 6 0.0195 -7.0178 -1.9909 19 16 1.6945 -7.2135 -2.2856 20 6 -0.3972 -3.5130 -1.5827 21 6 0.2262 -2.3564 -1.2188 22 1 -0.4850 0.8401 0.0004 23 1 2.6908 -3.6905 0.7347 24 1 1.5506 -5.7487 0.0757 25 1 -2.6811 -5.4719 -1.0391 26 1 -3.1165 -7.8823 -1.9153 27 1 -1.2597 -3.4789 -2.2318 28 1 -0.1413 -1.4069 -1.5789 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051601657.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:38 Heat of formation + Delta-G solvation = 61.525931 kcal Electronic energy + Delta-G solvation = -14738.510505 eV Core-core repulsion = 12266.585283 eV Total energy + Delta-G solvation = -2471.925222 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.62038 -39.62867 -36.46840 -34.86942 -31.86048 -31.65552 -30.72281 -27.45409 -24.70174 -23.60522 -22.57402 -22.23686 -20.46876 -19.38303 -17.72871 -17.16064 -16.95389 -16.83359 -15.93746 -15.60861 -15.12739 -14.80872 -14.42464 -14.08320 -13.74279 -13.49224 -12.85914 -12.74443 -12.49566 -12.38856 -12.20505 -11.77292 -11.36202 -11.01180 -10.87285 -9.66539 -9.43652 -8.81518 -8.73511 -8.45477 -6.45385 0.16658 0.73240 0.85262 1.06393 1.17013 1.40095 1.49871 1.53950 1.73058 2.17639 2.24270 2.58487 3.55537 3.97481 4.04248 4.24523 4.34318 4.45893 4.55098 4.87581 5.00823 5.07951 5.20039 5.38521 5.51799 5.60162 5.90079 5.93923 6.08007 6.15666 6.22720 6.51261 6.77694 6.85422 8.17563 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.043812 B = 0.005778 C = 0.005284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.942227 B = 4844.719538 C = 5297.955627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.040 3.960 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.261 1.261 6 H -0.259 1.259 7 C -0.477 4.477 8 H 0.082 0.918 9 C 0.099 3.901 10 C -0.241 4.241 11 C -0.036 4.036 12 C -0.054 4.054 13 N -0.361 5.361 14 C -0.031 4.031 15 C 0.026 3.974 16 N -0.540 5.540 17 H 0.457 0.543 18 C 0.433 3.567 19 S -0.768 6.768 20 C -0.069 4.069 21 C -0.181 4.181 22 H 0.297 0.703 23 H 0.102 0.898 24 H 0.097 0.903 25 H 0.220 0.780 26 H 0.263 0.737 27 H 0.123 0.877 28 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.604 -5.920 -1.506 13.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.178 4.178 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.185 1.185 6 H -0.183 1.183 7 C -0.505 4.505 8 H 0.100 0.900 9 C 0.096 3.904 10 C -0.262 4.262 11 C -0.056 4.056 12 C -0.145 4.145 13 N -0.039 5.039 14 C -0.159 4.159 15 C -0.104 4.104 16 N -0.154 5.154 17 H 0.302 0.698 18 C 0.071 3.929 19 S -0.639 6.639 20 C -0.089 4.089 21 C -0.201 4.201 22 H 0.108 0.892 23 H 0.120 0.880 24 H 0.115 0.885 25 H 0.236 0.764 26 H 0.278 0.722 27 H 0.141 0.859 28 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.762 -5.776 -1.630 12.322 hybrid contribution -0.007 0.296 0.107 0.315 sum -10.769 -5.480 -1.523 12.179 Atomic orbital electron populations 1.69845 1.08871 1.31522 1.32250 1.26797 0.95612 1.04540 0.90848 0.85198 0.78918 0.75264 0.80154 1.18652 1.18507 1.18315 1.19947 0.98759 0.92367 1.39379 0.90018 1.18056 0.91365 0.92718 0.88288 1.20730 1.04682 0.92538 1.08208 1.20229 0.93441 0.97246 0.94650 1.16826 1.03014 0.82452 1.12199 1.42180 1.07832 1.10443 1.43480 1.23371 0.84240 0.99996 1.08263 1.23405 0.91609 0.93115 1.02263 1.43201 1.05402 1.15971 1.50791 0.69755 1.22106 0.93264 0.84888 0.92674 1.93330 0.97622 1.91212 1.81728 1.20385 0.99525 0.90509 0.98455 1.20883 0.99963 0.96991 1.02223 0.89239 0.88002 0.88501 0.76369 0.72155 0.85908 0.86345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.06 10.96 21.81 0.24 -37.82 15 2 C 0.04 1.89 5.13 85.21 0.44 2.33 15 3 Si 0.98 35.55 29.60 68.60 2.03 37.58 15 4 H -0.26 -9.49 7.11 99.48 0.71 -8.78 15 5 H -0.26 -8.71 7.11 99.48 0.71 -8.01 15 6 H -0.26 -9.15 7.11 99.48 0.71 -8.44 15 7 C -0.48 -24.67 9.03 23.36 0.21 -24.46 15 8 H 0.08 4.11 7.91 -2.91 -0.02 4.09 15 9 C 0.10 5.23 5.57 -21.27 -0.12 5.11 15 10 C -0.24 -12.40 9.74 22.47 0.22 -12.18 15 11 C -0.04 -1.74 8.68 22.14 0.19 -1.55 15 12 C -0.05 -2.37 5.79 38.59 0.22 -2.15 15 13 N -0.36 -12.84 2.85 -349.14 -0.99 -13.84 15 14 C -0.03 -0.67 11.17 82.46 0.92 0.25 15 15 C 0.03 0.36 11.95 82.47 0.99 1.35 15 16 N -0.54 -11.93 6.15 -196.74 -1.21 -13.13 15 17 H 0.46 7.37 8.96 -92.71 -0.83 6.54 15 18 C 0.43 15.85 7.88 179.07 1.41 17.26 15 19 S -0.77 -37.32 29.20 -56.49 -1.65 -38.97 15 20 C -0.07 -3.02 9.61 22.13 0.21 -2.81 15 21 C -0.18 -8.98 8.64 22.47 0.19 -8.79 15 22 H 0.30 12.52 8.30 -92.71 -0.77 11.75 15 23 H 0.10 5.04 8.06 -2.91 -0.02 5.01 15 24 H 0.10 4.79 7.43 -2.91 -0.02 4.77 15 25 H 0.22 3.43 8.06 -2.91 -0.02 3.40 15 26 H 0.26 0.07 8.06 -2.91 -0.02 0.05 15 27 H 0.12 4.54 8.06 -2.91 -0.02 4.52 15 28 H 0.12 5.96 6.16 -2.91 -0.02 5.94 15 Total: -1.00 -74.66 264.25 3.67 -70.99 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.36 Total: 20.84 kcal Atomic # 6 Polarization: -30.54 SS G_CDS: 4.89 Total: -25.65 kcal Atomic # 7 Polarization: -62.83 SS G_CDS: -1.96 Total: -64.79 kcal Atomic # 14 Polarization: 35.55 SS G_CDS: 2.03 Total: 37.58 kcal Atomic # 16 Polarization: -37.32 SS G_CDS: -1.65 Total: -38.97 kcal Total: -74.66 3.67 -70.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601657.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.518 kcal (2) G-P(sol) polarization free energy of solvation -74.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds