Wall clock time and date at job start Mon Mar 30 2020 05:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31648 * 1 3 3 Si 1.86798 * 119.99931 * 2 1 4 4 H 1.48506 * 109.46740 * 269.99671 * 3 2 1 5 5 H 1.48495 * 109.47457 * 29.99682 * 3 2 1 6 6 H 1.48498 * 109.47321 * 150.00156 * 3 2 1 7 7 C 1.38655 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99637 * 0.02562 * 7 2 1 9 9 S 1.76198 * 119.99914 * 180.02562 * 7 2 1 10 10 C 1.76205 * 99.99667 * 180.02562 * 9 7 2 11 11 N 1.31407 * 125.83134 * 359.97438 * 10 9 7 12 12 C 1.34053 * 109.34366 * 180.02562 * 11 10 9 13 13 C 1.34726 * 108.41684 * 0.23846 * 12 11 10 14 14 N 1.36522 * 125.82924 * 180.02562 * 10 9 7 15 15 C 1.40166 * 126.53436 * 359.93029 * 14 10 9 16 16 C 1.38830 * 120.06711 * 309.72672 * 15 14 10 17 17 C 1.38123 * 119.93484 * 179.72011 * 16 15 14 18 18 C 1.38284 * 120.05871 * 0.54963 * 17 16 15 19 19 C 1.38277 * 120.13753 * 359.72503 * 18 17 16 20 20 C 1.38112 * 120.06898 * 359.97438 * 19 18 17 21 21 H 0.97002 * 120.00080 * 0.02562 * 1 2 3 22 22 H 1.08002 * 125.78801 * 179.97438 * 12 11 10 23 23 H 1.08005 * 126.51465 * 179.75546 * 13 12 11 24 24 H 1.08001 * 120.03490 * 359.97438 * 16 15 14 25 25 H 1.07995 * 119.97175 * 180.27552 * 17 16 15 26 26 H 1.08006 * 119.92616 * 179.69950 * 18 17 16 27 27 H 1.08000 * 119.96575 * 180.02562 * 19 18 17 28 28 H 1.08002 * 120.03587 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3165 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4980 2.0463 -1.4002 5 1 1.4479 2.6527 0.6999 6 1 3.5480 1.4402 0.7000 7 6 2.0098 -1.2008 0.0005 8 1 1.4697 -2.1361 0.0005 9 16 3.7717 -1.2007 0.0012 10 6 4.0777 -2.9360 0.0009 11 7 3.1620 -3.8786 0.0009 12 6 3.7599 -5.0784 0.0012 13 6 5.0938 -4.8893 0.0069 14 7 5.3065 -3.5309 0.0018 15 6 6.5482 -2.8807 0.0016 16 6 6.8085 -1.8786 -0.9231 17 6 8.0311 -1.2357 -0.9171 18 6 8.9993 -1.5974 0.0016 19 6 8.7450 -2.5991 0.9202 20 6 7.5222 -3.2413 0.9231 21 1 -0.4850 0.8401 -0.0004 22 1 3.2574 -6.0344 0.0016 23 1 5.8519 -5.6585 0.0123 24 1 6.0544 -1.5990 -1.6439 25 1 8.2326 -0.4530 -1.6333 26 1 9.9562 -1.0966 0.0012 27 1 9.5030 -2.8791 1.6368 28 1 7.3241 -4.0233 1.6411 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057497313.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:40 Heat of formation + Delta-G solvation = 68.645979 kcal Electronic energy + Delta-G solvation = -14644.667506 eV Core-core repulsion = 12173.051032 eV Total energy + Delta-G solvation = -2471.616474 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.95945 -39.91995 -35.03831 -34.68260 -32.05736 -30.66243 -30.01319 -27.94021 -24.43083 -23.87201 -22.33586 -21.93210 -20.09318 -18.98068 -17.26896 -17.13507 -16.74879 -16.42942 -15.55194 -15.40167 -15.01560 -14.85800 -14.47823 -14.38361 -13.75994 -13.56380 -13.12208 -13.07534 -12.55575 -12.22655 -11.96972 -11.39156 -11.21987 -11.15766 -10.83551 -10.39164 -9.98656 -9.59810 -8.66556 -8.52073 -6.29798 -0.00476 0.34786 0.65373 1.07492 1.28564 1.34680 1.44383 1.93002 2.12282 2.18152 2.48542 2.72707 2.84771 3.86961 3.90189 3.95542 4.22837 4.30663 4.43675 4.46002 4.61891 4.71739 5.00523 5.06347 5.38052 5.46862 5.50502 5.74574 5.75896 5.84871 6.25534 6.34153 6.85320 7.07462 8.62110 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.023694 B = 0.008520 C = 0.006523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.442019 B = 3285.647102 C = 4291.724850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.044 3.956 3 Si 0.912 3.088 4 H -0.250 1.250 5 H -0.252 1.252 6 H -0.223 1.223 7 C -0.544 4.544 8 H 0.067 0.933 9 S 0.051 5.949 10 C 0.187 3.813 11 N -0.529 5.529 12 C -0.046 4.046 13 C -0.046 4.046 14 N -0.409 5.409 15 C 0.091 3.909 16 C -0.133 4.133 17 C -0.103 4.103 18 C -0.108 4.108 19 C -0.099 4.099 20 C -0.121 4.121 21 H 0.280 0.720 22 H 0.193 0.807 23 H 0.219 0.781 24 H 0.112 0.888 25 H 0.154 0.846 26 H 0.166 0.834 27 H 0.166 0.834 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.300 -3.217 0.448 22.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.162 4.162 3 Si 0.731 3.269 4 H -0.174 1.174 5 H -0.175 1.175 6 H -0.147 1.147 7 C -0.692 4.692 8 H 0.086 0.914 9 S 0.284 5.716 10 C -0.181 4.181 11 N -0.251 5.251 12 C -0.194 4.194 13 C -0.179 4.179 14 N -0.093 5.093 15 C 0.001 3.999 16 C -0.153 4.153 17 C -0.121 4.121 18 C -0.126 4.126 19 C -0.117 4.117 20 C -0.141 4.141 21 H 0.089 0.911 22 H 0.210 0.790 23 H 0.235 0.765 24 H 0.130 0.870 25 H 0.172 0.828 26 H 0.183 0.817 27 H 0.183 0.817 28 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 22.063 -2.010 0.448 22.159 hybrid contribution -1.119 -0.953 -0.134 1.476 sum 20.944 -2.963 0.313 21.155 Atomic orbital electron populations 1.70048 1.07725 1.29282 1.48227 1.25704 0.95520 1.02419 0.92539 0.85959 0.80956 0.78928 0.81058 1.17414 1.17530 1.14708 1.22582 0.89959 0.97802 1.58903 0.91445 1.82079 1.07827 0.90705 1.90999 1.25779 0.82344 1.01408 1.08539 1.70773 1.32289 0.99965 1.22088 1.22911 0.91971 0.96684 1.07880 1.23362 0.99155 0.83821 1.11600 1.43229 1.04113 1.06451 1.55464 1.18156 0.84313 0.98071 0.99390 1.21282 0.99126 0.96812 0.98038 1.21387 0.91551 0.99290 0.99884 1.21723 1.00314 0.96606 0.93966 1.21457 0.95732 0.95321 0.99228 1.21293 0.93811 1.01953 0.97043 0.91061 0.78979 0.76452 0.86974 0.82790 0.81658 0.81653 0.84536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.57 13.97 21.62 0.30 -57.27 15 2 C 0.04 2.61 5.50 84.82 0.47 3.08 15 3 Si 0.91 42.17 27.73 68.60 1.90 44.07 15 4 H -0.25 -10.98 7.11 99.48 0.71 -10.28 15 5 H -0.25 -10.93 7.11 99.48 0.71 -10.22 15 6 H -0.22 -9.68 6.74 99.48 0.67 -9.01 15 7 C -0.54 -33.89 9.90 67.92 0.67 -33.22 15 8 H 0.07 4.79 7.12 -2.91 -0.02 4.77 15 9 S 0.05 2.62 18.21 -56.49 -1.03 1.59 15 10 C 0.19 9.12 7.80 179.52 1.40 10.52 15 11 N -0.53 -27.25 10.01 -196.03 -1.96 -29.21 15 12 C -0.05 -1.79 11.84 83.55 0.99 -0.80 15 13 C -0.05 -1.51 11.31 83.00 0.94 -0.57 15 14 N -0.41 -15.71 2.91 -345.91 -1.01 -16.71 15 15 C 0.09 2.86 5.86 38.10 0.22 3.09 15 16 C -0.13 -3.94 8.87 22.38 0.20 -3.74 15 17 C -0.10 -2.14 10.04 22.25 0.22 -1.91 15 18 C -0.11 -1.69 10.04 22.29 0.22 -1.47 15 19 C -0.10 -1.64 10.04 22.25 0.22 -1.42 15 20 C -0.12 -2.86 9.70 22.39 0.22 -2.64 15 21 H 0.28 15.98 8.31 -92.71 -0.77 15.20 15 22 H 0.19 6.01 8.06 -2.91 -0.02 5.99 15 23 H 0.22 4.72 8.06 -2.91 -0.02 4.69 15 24 H 0.11 3.80 7.59 -2.91 -0.02 3.78 15 25 H 0.15 2.38 8.06 -2.91 -0.02 2.36 15 26 H 0.17 1.33 8.06 -2.91 -0.02 1.31 15 27 H 0.17 1.53 8.06 -2.91 -0.02 1.50 15 28 H 0.14 2.87 8.06 -2.91 -0.02 2.84 15 Total: -1.00 -78.79 266.05 5.11 -73.68 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 1.13 Total: 12.93 kcal Atomic # 6 Polarization: -34.86 SS G_CDS: 5.78 Total: -29.08 kcal Atomic # 7 Polarization: -100.53 SS G_CDS: -2.67 Total: -103.19 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.90 Total: 44.07 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -1.03 Total: 1.59 kcal Total: -78.79 5.11 -73.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057497313.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.324 kcal (2) G-P(sol) polarization free energy of solvation -78.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds