Wall clock time and date at job start Mon Mar 30 2020 06:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.47194 * 109.47220 * 2 1 4 4 N 2.60793 * 109.47230 * 359.97438 * 2 1 3 5 5 C 1.50698 * 109.47083 * 239.99228 * 2 1 3 6 6 H 1.07998 * 120.00094 * 244.52892 * 5 2 1 7 7 C 1.37874 * 119.99689 * 64.81464 * 5 2 1 8 8 N 1.31520 * 120.00390 * 359.71577 * 7 5 2 9 9 Si 1.86801 * 119.99929 * 179.72413 * 7 5 2 10 10 H 1.48502 * 109.47392 * 59.99270 * 9 7 5 11 11 H 1.48500 * 109.47250 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46914 * 299.99569 * 9 7 5 13 13 C 1.50708 * 109.46774 * 119.99591 * 2 1 3 14 14 C 1.38258 * 119.99903 * 245.37610 * 13 2 1 15 15 C 1.38214 * 119.99915 * 180.02562 * 14 13 2 16 16 C 1.38257 * 119.99941 * 359.95020 * 15 14 13 17 17 C 1.38217 * 120.00072 * 0.02562 * 16 15 14 18 18 N 1.48017 * 119.99880 * 179.97438 * 17 16 15 19 19 O 1.21798 * 120.00225 * 0.02562 * 18 17 16 20 20 O 1.21800 * 119.99890 * 179.97438 * 18 17 16 21 21 C 1.38214 * 119.99965 * 65.10296 * 13 2 1 22 22 H 1.08999 * 109.47066 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47402 * 300.00777 * 1 2 3 24 24 H 1.09006 * 109.46376 * 60.00391 * 1 2 3 25 25 H 0.96992 * 120.00096 * 180.02562 * 8 7 5 26 26 H 1.07997 * 119.99645 * 359.97438 * 14 13 2 27 27 H 1.07996 * 119.99588 * 179.97438 * 15 14 13 28 28 H 1.07998 * 119.99850 * 180.02562 * 16 15 14 29 29 H 1.08000 * 120.00027 * 359.97438 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0207 1.3878 0.0000 4 7 2.3994 2.4588 -0.0011 5 6 2.0324 -0.7106 -1.2304 6 1 2.5916 -1.6293 -1.1328 7 6 1.7831 -0.1846 -2.4802 8 7 1.1021 0.9343 -2.5990 9 14 2.4123 -1.0613 -4.0050 10 1 1.8299 -2.4259 -4.0672 11 1 2.0139 -0.2978 -5.2148 12 1 3.8930 -1.1573 -3.9450 13 6 2.0323 -0.7104 1.2306 14 6 2.7331 -0.0104 2.1952 15 6 3.1942 -0.6620 3.3236 16 6 2.9538 -2.0135 3.4881 17 6 2.2528 -2.7132 2.5240 18 7 1.9959 -4.1602 2.6999 19 8 2.4018 -4.7343 3.6944 20 8 1.3778 -4.7767 1.8505 21 6 1.7875 -2.0604 1.3975 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 0.9264 1.3041 -3.4783 26 1 2.9209 1.0453 2.0666 27 1 3.7419 -0.1153 4.0768 28 1 3.3137 -2.5226 4.3700 29 1 1.2360 -2.6061 0.6463 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059623667.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:09 Heat of formation + Delta-G solvation = 27.250534 kcal Electronic energy + Delta-G solvation = -17130.690679 eV Core-core repulsion = 14214.526293 eV Total energy + Delta-G solvation = -2916.164386 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.18205 -40.84178 -37.94322 -37.58722 -35.63389 -33.80107 -32.80144 -30.57648 -27.59849 -27.44579 -25.19739 -23.39600 -22.62573 -20.41209 -19.65243 -19.13668 -18.54037 -17.62826 -16.94034 -16.78768 -15.98671 -15.33375 -15.00641 -14.83125 -14.06367 -13.73952 -13.54669 -13.38853 -13.08266 -13.00245 -12.84735 -12.72787 -12.61856 -12.32435 -12.27893 -12.21978 -12.11203 -11.69744 -11.30687 -10.68192 -10.47676 -9.97005 -8.28629 -6.47344 -1.12152 0.10841 0.41482 0.45040 1.43948 1.46451 1.52429 2.23458 2.24492 2.39559 2.45261 3.01205 3.40145 3.63058 3.78370 3.92593 4.02205 4.09782 4.42063 4.73392 4.80926 4.86928 4.90690 5.05124 5.17085 5.22583 5.37129 5.54300 5.59466 5.79871 5.95965 6.55703 6.60234 7.12789 7.26281 8.74185 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.022469 B = 0.008152 C = 0.006599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.840608 B = 3433.905034 C = 4242.333877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.185 3.815 3 C 0.279 3.721 4 N -0.534 5.534 5 C -0.530 4.530 6 H 0.078 0.922 7 C 0.033 3.967 8 N -0.898 5.898 9 Si 0.954 3.046 10 H -0.260 1.260 11 H -0.288 1.288 12 H -0.276 1.276 13 C -0.050 4.050 14 C -0.080 4.080 15 C -0.096 4.096 16 C -0.059 4.059 17 C -0.056 4.056 18 N 0.034 4.966 19 O -0.157 6.157 20 O -0.200 6.200 21 C -0.040 4.040 22 H 0.068 0.932 23 H 0.042 0.958 24 H 0.063 0.937 25 H 0.268 0.732 26 H 0.129 0.871 27 H 0.185 0.815 28 H 0.177 0.823 29 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.851 -5.155 10.405 11.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.182 3.818 3 C -0.037 4.037 4 N -0.211 5.211 5 C -0.568 4.568 6 H 0.097 0.903 7 C -0.171 4.171 8 N -0.533 5.533 9 Si 0.780 3.220 10 H -0.184 1.184 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.052 4.052 14 C -0.099 4.099 15 C -0.114 4.114 16 C -0.077 4.077 17 C -0.139 4.139 18 N 0.550 4.450 19 O -0.377 6.377 20 O -0.408 6.408 21 C -0.059 4.059 22 H 0.087 0.913 23 H 0.061 0.939 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.146 0.854 27 H 0.203 0.797 28 H 0.194 0.806 29 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.426 -2.722 10.120 10.757 hybrid contribution -0.079 -0.850 -1.419 1.656 sum 2.347 -3.572 8.701 9.694 Atomic orbital electron populations 1.21752 0.93024 1.02158 1.01214 1.15072 0.94511 0.80329 0.91938 1.29963 0.90532 0.94743 0.88454 1.80871 1.12759 1.14006 1.13485 1.21146 1.37349 1.09501 0.88845 0.90344 1.25668 0.94241 0.95169 1.02001 1.69938 1.38431 1.19783 1.25172 0.85635 0.78736 0.79251 0.78420 1.18430 1.21398 1.20160 1.19769 0.97329 0.92708 0.95351 1.21786 0.94006 1.00862 0.93213 1.21475 0.99352 0.92657 0.97886 1.21309 0.93945 0.94637 0.97858 1.21211 1.11434 0.79525 1.01730 1.43841 0.97746 1.04117 0.99323 1.94451 1.52926 1.70663 1.19647 1.94561 1.40562 1.67458 1.38190 1.20716 0.96358 0.93910 0.94964 0.91272 0.93884 0.91794 0.92310 0.85350 0.79745 0.80565 0.83175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.83 8.11 71.98 0.58 -4.25 15 2 C 0.19 7.70 0.53 -55.48 -0.03 7.67 15 3 C 0.28 12.77 10.20 89.44 0.91 13.68 15 4 N -0.53 -25.89 18.47 20.00 0.37 -25.52 15 5 C -0.53 -24.47 7.57 25.60 0.19 -24.27 15 6 H 0.08 3.52 7.38 -2.91 -0.02 3.50 15 7 C 0.03 1.57 5.14 84.65 0.44 2.01 15 8 N -0.90 -46.31 10.51 21.45 0.23 -46.08 15 9 Si 0.95 39.57 29.54 68.60 2.03 41.59 15 10 H -0.26 -10.33 7.11 99.48 0.71 -9.62 15 11 H -0.29 -12.07 7.11 99.48 0.71 -11.36 15 12 H -0.28 -11.47 7.11 99.48 0.71 -10.77 15 13 C -0.05 -1.69 4.72 -19.86 -0.09 -1.78 15 14 C -0.08 -2.29 9.15 22.27 0.20 -2.09 15 15 C -0.10 -1.96 10.05 22.27 0.22 -1.73 15 16 C -0.06 -1.28 9.56 22.27 0.21 -1.07 15 17 C -0.06 -1.61 6.85 36.37 0.25 -1.37 15 18 N 0.03 1.08 4.45 -46.46 -0.21 0.88 15 19 O -0.16 -4.74 18.45 18.89 0.35 -4.39 15 20 O -0.20 -7.00 18.45 18.89 0.35 -6.65 15 21 C -0.04 -1.30 8.06 22.27 0.18 -1.12 15 22 H 0.07 2.48 7.70 -2.39 -0.02 2.46 15 23 H 0.04 1.49 8.14 -2.39 -0.02 1.47 15 24 H 0.06 2.88 6.45 -2.38 -0.02 2.86 15 25 H 0.27 13.53 8.31 -92.71 -0.77 12.76 15 26 H 0.13 3.88 6.45 -2.91 -0.02 3.86 15 27 H 0.19 2.22 8.06 -2.91 -0.02 2.20 15 28 H 0.18 2.85 7.61 -2.91 -0.02 2.82 15 29 H 0.15 5.07 7.30 -2.91 -0.02 5.05 15 Total: -1.00 -56.62 268.54 7.37 -49.25 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: 1.19 Total: 5.23 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 3.07 Total: -14.31 kcal Atomic # 7 Polarization: -71.11 SS G_CDS: 0.39 Total: -70.72 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.70 Total: -11.04 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.59 kcal Total: -56.62 7.37 -49.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059623667.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.503 kcal (2) G-P(sol) polarization free energy of solvation -56.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds