Wall clock time and date at job start Mon Mar 30 2020 06:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.47195 * 109.47100 * 2 1 4 4 N 2.60799 * 109.46938 * 0.02562 * 2 1 3 5 5 C 1.50700 * 109.47020 * 119.99825 * 2 1 3 6 6 H 1.08000 * 120.00202 * 115.34040 * 5 2 1 7 7 C 1.37880 * 120.00243 * 295.06639 * 5 2 1 8 8 N 1.31515 * 119.99786 * 0.27400 * 7 5 2 9 9 Si 1.86795 * 120.00255 * 180.27685 * 7 5 2 10 10 H 1.48497 * 109.47283 * 89.99722 * 9 7 5 11 11 H 1.48503 * 109.47255 * 209.99830 * 9 7 5 12 12 H 1.48507 * 109.47129 * 329.99829 * 9 7 5 13 13 C 1.50696 * 109.47539 * 239.99719 * 2 1 3 14 14 C 1.38257 * 119.99923 * 124.94636 * 13 2 1 15 15 C 1.38221 * 119.99700 * 179.77008 * 14 13 2 16 16 C 1.38255 * 119.99939 * 0.51114 * 15 14 13 17 17 C 1.38217 * 119.99995 * 359.74544 * 16 15 14 18 18 N 1.48019 * 119.99576 * 179.97438 * 17 16 15 19 19 O 1.21804 * 119.99722 * 180.02562 * 18 17 16 20 20 O 1.21799 * 120.00466 * 0.02562 * 18 17 16 21 21 C 1.38213 * 120.00030 * 305.23033 * 13 2 1 22 22 H 1.09000 * 109.47326 * 300.00063 * 1 2 3 23 23 H 1.08995 * 109.46784 * 60.00349 * 1 2 3 24 24 H 1.09001 * 109.46640 * 179.97438 * 1 2 3 25 25 H 0.96997 * 119.99858 * 180.02562 * 8 7 5 26 26 H 1.07996 * 119.99944 * 0.02562 * 14 13 2 27 27 H 1.07997 * 119.99718 * 180.23907 * 15 14 13 28 28 H 1.07999 * 119.99698 * 179.72678 * 16 15 14 29 29 H 1.07998 * 119.99795 * 359.97438 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0207 1.3878 0.0000 4 7 2.3993 2.4589 0.0011 5 6 2.0323 -0.7104 1.2305 6 1 2.5897 -1.6303 1.1333 7 6 1.7852 -0.1830 2.4802 8 7 1.1064 0.9372 2.5987 9 14 2.4145 -1.0594 4.0051 10 1 3.7736 -0.5615 4.3368 11 1 1.4982 -0.7927 5.1429 12 1 2.4718 -2.5209 3.7478 13 6 2.0324 -0.7104 -1.2304 14 6 2.9095 -0.0720 -2.0875 15 6 3.3740 -0.7254 -3.2135 16 6 2.9534 -2.0134 -3.4882 17 6 2.0724 -2.6497 -2.6341 18 7 1.6216 -4.0285 -2.9286 19 8 0.8449 -4.5890 -2.1761 20 8 2.0273 -4.6025 -3.9232 21 6 1.6119 -1.9980 -1.5050 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.9329 1.3085 3.4779 26 1 3.2349 0.9356 -1.8751 27 1 4.0622 -0.2281 -3.8810 28 1 3.3129 -2.5223 -4.3703 29 1 0.9235 -2.4952 -0.8377 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059623669.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:11 Heat of formation + Delta-G solvation = 27.384945 kcal Electronic energy + Delta-G solvation = -17121.978640 eV Core-core repulsion = 14205.820083 eV Total energy + Delta-G solvation = -2916.158557 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.18269 -40.84602 -37.94552 -37.58769 -35.63467 -33.80771 -32.81990 -30.55503 -27.64084 -27.42216 -25.22303 -23.37224 -22.60176 -20.40383 -19.64407 -19.20602 -18.54057 -17.62913 -16.93807 -16.80771 -15.99173 -15.35624 -15.00529 -14.83964 -14.03794 -13.73505 -13.53115 -13.40041 -13.10109 -13.03344 -12.83508 -12.75724 -12.62142 -12.33380 -12.25207 -12.21963 -12.07154 -11.68416 -11.32673 -10.69776 -10.47947 -9.97156 -8.28826 -6.47708 -1.12229 0.10723 0.41377 0.44766 1.41637 1.46450 1.54670 2.23161 2.24202 2.38691 2.46178 3.00370 3.40284 3.62302 3.78330 3.92434 4.01642 4.09100 4.41625 4.72112 4.79180 4.87330 4.89557 5.04294 5.16812 5.22602 5.38190 5.54418 5.59453 5.79116 5.95194 6.55812 6.60205 7.12605 7.25918 8.74122 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.023098 B = 0.007897 C = 0.006597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.921952 B = 3544.890238 C = 4243.102528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.185 3.815 3 C 0.279 3.721 4 N -0.534 5.534 5 C -0.528 4.528 6 H 0.078 0.922 7 C 0.032 3.968 8 N -0.898 5.898 9 Si 0.956 3.044 10 H -0.284 1.284 11 H -0.283 1.283 12 H -0.259 1.259 13 C -0.048 4.048 14 C -0.080 4.080 15 C -0.095 4.095 16 C -0.059 4.059 17 C -0.055 4.055 18 N 0.034 4.966 19 O -0.199 6.199 20 O -0.158 6.158 21 C -0.042 4.042 22 H 0.063 0.937 23 H 0.041 0.959 24 H 0.070 0.930 25 H 0.268 0.732 26 H 0.127 0.873 27 H 0.185 0.815 28 H 0.177 0.823 29 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.386 -5.389 -10.047 11.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.181 3.819 3 C -0.037 4.037 4 N -0.211 5.211 5 C -0.566 4.566 6 H 0.096 0.904 7 C -0.171 4.171 8 N -0.534 5.534 9 Si 0.781 3.219 10 H -0.210 1.210 11 H -0.209 1.209 12 H -0.182 1.182 13 C -0.050 4.050 14 C -0.098 4.098 15 C -0.114 4.114 16 C -0.078 4.078 17 C -0.138 4.138 18 N 0.550 4.450 19 O -0.407 6.407 20 O -0.377 6.377 21 C -0.061 4.061 22 H 0.082 0.918 23 H 0.060 0.940 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.145 0.855 27 H 0.202 0.798 28 H 0.194 0.806 29 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.045 -2.991 -9.717 10.613 hybrid contribution -0.160 -0.796 1.367 1.589 sum 2.885 -3.786 -8.350 9.612 Atomic orbital electron populations 1.21774 0.93148 1.02227 1.01179 1.15080 0.94517 0.80330 0.91956 1.29961 0.90512 0.94754 0.88468 1.80873 1.12781 1.13975 1.13486 1.21136 1.37365 1.09362 0.88736 0.90402 1.25679 0.94240 0.95199 1.02023 1.69947 1.38519 1.19750 1.25150 0.85553 0.77773 0.79681 0.78848 1.20995 1.20850 1.18242 1.19762 0.96632 0.93320 0.95331 1.21774 0.93971 1.00380 0.93713 1.21474 0.99959 0.92926 0.96997 1.21304 0.92821 0.94982 0.98673 1.21198 1.07561 0.82953 1.02107 1.43837 0.98508 1.03413 0.99261 1.94558 1.31355 1.68367 1.46382 1.94454 1.58860 1.66981 1.17448 1.20706 0.97843 0.93579 0.94018 0.91819 0.93977 0.91100 0.92303 0.85475 0.79791 0.80563 0.83095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.92 8.01 71.98 0.58 -4.34 15 2 C 0.19 7.69 0.53 -55.48 -0.03 7.66 15 3 C 0.28 12.79 10.18 89.44 0.91 13.70 15 4 N -0.53 -25.92 18.47 20.00 0.37 -25.55 15 5 C -0.53 -24.31 7.76 25.60 0.20 -24.12 15 6 H 0.08 3.50 7.68 -2.91 -0.02 3.48 15 7 C 0.03 1.54 5.14 84.66 0.44 1.97 15 8 N -0.90 -46.29 10.51 21.45 0.23 -46.06 15 9 Si 0.96 39.45 29.54 68.60 2.03 41.48 15 10 H -0.28 -11.91 7.11 99.48 0.71 -11.20 15 11 H -0.28 -11.65 7.11 99.48 0.71 -10.94 15 12 H -0.26 -10.21 7.11 99.48 0.71 -9.51 15 13 C -0.05 -1.65 4.70 -19.87 -0.09 -1.74 15 14 C -0.08 -2.31 9.15 22.27 0.20 -2.10 15 15 C -0.10 -1.97 10.05 22.27 0.22 -1.75 15 16 C -0.06 -1.29 9.56 22.27 0.21 -1.08 15 17 C -0.06 -1.58 6.85 36.37 0.25 -1.33 15 18 N 0.03 1.08 4.45 -46.46 -0.21 0.87 15 19 O -0.20 -6.86 18.45 18.88 0.35 -6.51 15 20 O -0.16 -4.74 18.45 18.89 0.35 -4.40 15 21 C -0.04 -1.35 8.37 22.27 0.19 -1.16 15 22 H 0.06 2.87 6.46 -2.39 -0.02 2.86 15 23 H 0.04 1.47 8.14 -2.39 -0.02 1.45 15 24 H 0.07 2.53 7.11 -2.39 -0.02 2.51 15 25 H 0.27 13.47 8.31 -92.71 -0.77 12.70 15 26 H 0.13 3.92 6.45 -2.91 -0.02 3.90 15 27 H 0.18 2.27 8.06 -2.91 -0.02 2.25 15 28 H 0.18 2.85 7.61 -2.91 -0.02 2.83 15 29 H 0.15 4.97 6.82 -2.91 -0.02 4.95 15 Total: -1.00 -56.56 268.14 7.38 -49.19 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: 1.19 Total: 5.29 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: 3.07 Total: -14.30 kcal Atomic # 7 Polarization: -71.13 SS G_CDS: 0.39 Total: -70.75 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.70 Total: -10.91 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.48 kcal Total: -56.56 7.38 -49.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059623669.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.572 kcal (2) G-P(sol) polarization free energy of solvation -56.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds