Wall clock time and date at job start Mon Mar 30 2020 05:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31022 * 1 3 3 Si 1.86798 * 120.00248 * 2 1 4 4 H 1.48496 * 109.47197 * 270.00072 * 3 2 1 5 5 H 1.48501 * 109.46777 * 30.00242 * 3 2 1 6 6 H 1.48503 * 109.46982 * 150.00054 * 3 2 1 7 7 C 1.39725 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99875 * 180.02562 * 7 2 1 9 9 C 1.41156 * 120.00059 * 359.97438 * 7 2 1 10 10 C 1.37697 * 122.86312 * 179.97438 * 9 7 2 11 11 S 1.70994 * 108.84063 * 179.76921 * 10 9 7 12 12 C 1.75893 * 90.80768 * 0.33808 * 11 10 9 13 13 C 1.50700 * 124.99466 * 179.91769 * 12 11 10 14 14 C 1.50707 * 109.46939 * 269.70071 * 13 12 11 15 15 C 1.38227 * 119.62059 * 125.01917 * 14 13 12 16 16 C 1.38627 * 119.15702 * 179.74122 * 15 14 13 17 17 C 1.38669 * 118.42389 * 0.47826 * 16 15 14 18 18 C 1.38186 * 119.16143 * 359.49762 * 17 16 15 19 19 N 1.31856 * 119.61137 * 304.99347 * 14 13 12 20 20 N 1.28794 * 110.01543 * 359.65252 * 12 11 10 21 21 H 0.97003 * 119.99683 * 359.97438 * 1 2 3 22 22 H 1.08001 * 125.57889 * 0.06867 * 10 9 7 23 23 H 1.08995 * 109.47643 * 149.69758 * 13 12 11 24 24 H 1.08999 * 109.47131 * 29.69272 * 13 12 11 25 25 H 1.07998 * 120.41916 * 359.95342 * 15 14 13 26 26 H 1.08008 * 120.78688 * 180.22921 * 16 15 14 27 27 H 1.08002 * 120.42244 * 179.78279 * 17 16 15 28 28 H 1.07996 * 119.61757 * 180.25243 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 2.4918 2.0464 -1.4000 5 1 1.4417 2.6526 0.7001 6 1 3.5419 1.4400 0.7000 7 6 2.0088 -1.2101 -0.0005 8 1 3.0888 -1.2101 -0.0001 9 6 1.3030 -2.4325 -0.0005 10 6 1.9310 -3.6579 -0.0016 11 16 0.7427 -4.8874 0.0053 12 6 -0.5392 -3.6830 -0.0012 13 6 -2.0144 -3.9910 -0.0011 14 6 -2.5064 -4.0926 -1.4219 15 6 -3.1647 -5.2350 -1.8369 16 6 -3.6180 -5.3161 -3.1444 17 6 -3.3823 -4.2445 -3.9924 18 6 -2.7174 -3.1349 -3.5064 19 7 -2.3043 -3.0905 -2.2547 20 7 -0.0318 -2.4992 -0.0004 21 1 -0.4850 0.8401 0.0004 22 1 2.9993 -3.8165 -0.0014 23 1 -2.5519 -3.1944 0.5134 24 1 -2.1881 -4.9368 0.5120 25 1 -3.3269 -6.0526 -1.1501 26 1 -4.1387 -6.1948 -3.4955 27 1 -3.7182 -4.2748 -5.0184 28 1 -2.5335 -2.2945 -4.1592 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061798159.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:55 Heat of formation + Delta-G solvation = 70.914444 kcal Electronic energy + Delta-G solvation = -14691.715355 eV Core-core repulsion = 12220.197249 eV Total energy + Delta-G solvation = -2471.518106 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.86867 -37.63751 -33.65033 -32.61218 -32.02839 -29.52407 -27.16377 -25.44779 -23.25985 -22.60335 -20.96254 -18.62040 -17.54629 -16.55816 -15.90984 -15.29183 -15.07888 -14.93200 -14.06959 -13.45114 -13.22949 -12.98771 -12.61656 -12.15290 -12.02797 -11.51860 -11.42104 -11.09778 -11.06645 -10.65474 -10.31263 -9.60522 -9.59832 -9.20770 -8.94290 -8.72974 -7.88067 -7.84721 -7.23807 -6.42668 -4.25928 1.35542 1.57028 2.40427 3.01041 3.11269 3.15069 3.19112 3.77339 4.07784 4.10735 4.38069 4.66634 4.95674 5.07657 5.26240 5.34823 5.46191 5.59609 5.80354 5.83293 5.99496 6.23645 6.36217 6.42109 6.87653 6.99084 7.18993 7.34595 7.61891 8.27732 8.44416 8.64503 8.97843 9.72542 10.43298 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.024976 B = 0.007529 C = 0.006253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.829316 B = 3718.091265 C = 4476.840563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.072 3.928 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.433 4.433 8 H 0.082 0.918 9 C 0.226 3.774 10 C -0.457 4.457 11 S -0.058 6.058 12 C 0.067 3.933 13 C 0.014 3.986 14 C 0.147 3.853 15 C -0.173 4.173 16 C -0.080 4.080 17 C -0.187 4.187 18 C 0.102 3.898 19 N -0.448 5.448 20 N -0.374 5.374 21 H 0.273 0.727 22 H 0.135 0.865 23 H 0.105 0.895 24 H 0.089 0.911 25 H 0.133 0.867 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.191 -6.661 -4.217 11.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.151 4.151 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.467 4.467 8 H 0.100 0.900 9 C 0.105 3.895 10 C -0.596 4.596 11 S 0.189 5.811 12 C -0.218 4.218 13 C -0.028 4.028 14 C 0.008 3.992 15 C -0.193 4.193 16 C -0.106 4.106 17 C -0.207 4.207 18 C -0.056 4.056 19 N -0.156 5.156 20 N -0.087 5.087 21 H 0.083 0.917 22 H 0.152 0.848 23 H 0.123 0.877 24 H 0.108 0.892 25 H 0.151 0.849 26 H 0.147 0.853 27 H 0.147 0.853 28 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.207 -6.311 -3.886 11.058 hybrid contribution 0.649 0.786 -0.511 1.140 sum -7.557 -5.525 -4.398 10.343 Atomic orbital electron populations 1.70135 1.06776 1.27824 1.31648 1.25975 0.94962 1.00861 0.93306 0.86313 0.80316 0.80978 0.79057 1.19567 1.20257 1.18741 1.18940 0.93977 0.88408 1.45358 0.89993 1.18029 0.85476 0.92996 0.93048 1.25004 1.00679 0.93744 1.40167 1.82556 1.02734 1.16969 1.78842 1.27245 0.97263 0.90644 1.06621 1.19003 0.89624 1.02972 0.91220 1.21165 0.92872 0.89328 0.95858 1.21959 1.01112 0.99158 0.97081 1.21462 0.97451 0.98227 0.93466 1.22096 1.02258 0.95530 1.00845 1.22834 0.93339 0.97122 0.92259 1.67693 1.15884 1.28702 1.03305 1.67315 1.11758 1.19355 1.10254 0.91650 0.84766 0.87693 0.89246 0.84928 0.85270 0.85345 0.83183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.64 11.69 55.54 0.65 -19.99 15 2 C 0.07 1.93 5.49 -17.34 -0.10 1.84 15 3 Si 0.91 19.74 29.56 -169.99 -5.02 14.71 15 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 15 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 15 6 H -0.26 -5.62 7.11 56.52 0.40 -5.22 15 7 C -0.43 -12.40 9.23 -37.92 -0.35 -12.75 15 8 H 0.08 2.24 7.84 -52.49 -0.41 1.83 15 9 C 0.23 6.57 6.47 -86.17 -0.56 6.02 15 10 C -0.46 -12.29 10.98 30.53 0.34 -11.96 15 11 S -0.06 -1.34 23.16 -107.50 -2.49 -3.83 15 12 C 0.07 1.60 6.60 -13.55 -0.09 1.51 15 13 C 0.01 0.26 6.22 -29.03 -0.18 0.08 15 14 C 0.15 2.64 6.17 -82.58 -0.51 2.13 15 15 C -0.17 -2.42 9.71 -39.44 -0.38 -2.80 15 16 C -0.08 -0.98 10.18 -39.28 -0.40 -1.38 15 17 C -0.19 -2.41 10.11 -39.44 -0.40 -2.80 15 18 C 0.10 1.66 11.18 -17.55 -0.20 1.46 15 19 N -0.45 -9.02 10.01 -9.47 -0.09 -9.11 15 20 N -0.37 -10.43 8.46 -8.36 -0.07 -10.50 15 21 H 0.27 6.94 8.30 -40.82 -0.34 6.60 15 22 H 0.13 3.47 8.06 -52.49 -0.42 3.04 15 23 H 0.11 1.96 8.14 -51.93 -0.42 1.53 15 24 H 0.09 1.31 7.87 -51.93 -0.41 0.90 15 25 H 0.13 1.46 7.95 -52.49 -0.42 1.04 15 26 H 0.13 1.14 8.06 -52.48 -0.42 0.72 15 27 H 0.13 1.23 8.06 -52.49 -0.42 0.81 15 28 H 0.15 2.13 8.06 -52.49 -0.42 1.71 15 LS Contribution 268.89 15.07 4.05 4.05 Total: -1.00 -32.94 268.89 -8.29 -41.22 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -2.49 Total: 2.12 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -2.82 Total: -18.67 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.48 Total: -39.61 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.71 kcal Atomic # 16 Polarization: -1.34 SS G_CDS: -2.49 Total: -3.83 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -32.94 -8.29 -41.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061798159.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.139 kcal (2) G-P(sol) polarization free energy of solvation -32.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds