Wall clock time and date at job start Mon Mar 30 2020 05:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31022 * 1 3 3 Si 1.86798 * 120.00248 * 2 1 4 4 H 1.48496 * 109.47197 * 270.00072 * 3 2 1 5 5 H 1.48501 * 109.46777 * 30.00242 * 3 2 1 6 6 H 1.48503 * 109.46982 * 150.00054 * 3 2 1 7 7 C 1.39725 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99875 * 180.02562 * 7 2 1 9 9 C 1.41156 * 120.00059 * 359.97438 * 7 2 1 10 10 C 1.37697 * 122.86312 * 179.97438 * 9 7 2 11 11 S 1.70994 * 108.84063 * 179.76921 * 10 9 7 12 12 C 1.75893 * 90.80768 * 0.33808 * 11 10 9 13 13 C 1.50700 * 124.99466 * 179.91769 * 12 11 10 14 14 C 1.50707 * 109.46939 * 269.70071 * 13 12 11 15 15 C 1.38227 * 119.62059 * 125.01917 * 14 13 12 16 16 C 1.38627 * 119.15702 * 179.74122 * 15 14 13 17 17 C 1.38669 * 118.42389 * 0.47826 * 16 15 14 18 18 C 1.38186 * 119.16143 * 359.49762 * 17 16 15 19 19 N 1.31856 * 119.61137 * 304.99347 * 14 13 12 20 20 N 1.28794 * 110.01543 * 359.65252 * 12 11 10 21 21 H 0.97003 * 119.99683 * 359.97438 * 1 2 3 22 22 H 1.08001 * 125.57889 * 0.06867 * 10 9 7 23 23 H 1.08995 * 109.47643 * 149.69758 * 13 12 11 24 24 H 1.08999 * 109.47131 * 29.69272 * 13 12 11 25 25 H 1.07998 * 120.41916 * 359.95342 * 15 14 13 26 26 H 1.08008 * 120.78688 * 180.22921 * 16 15 14 27 27 H 1.08002 * 120.42244 * 179.78279 * 17 16 15 28 28 H 1.07996 * 119.61757 * 180.25243 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 2.4918 2.0464 -1.4000 5 1 1.4417 2.6526 0.7001 6 1 3.5419 1.4400 0.7000 7 6 2.0088 -1.2101 -0.0005 8 1 3.0888 -1.2101 -0.0001 9 6 1.3030 -2.4325 -0.0005 10 6 1.9310 -3.6579 -0.0016 11 16 0.7427 -4.8874 0.0053 12 6 -0.5392 -3.6830 -0.0012 13 6 -2.0144 -3.9910 -0.0011 14 6 -2.5064 -4.0926 -1.4219 15 6 -3.1647 -5.2350 -1.8369 16 6 -3.6180 -5.3161 -3.1444 17 6 -3.3823 -4.2445 -3.9924 18 6 -2.7174 -3.1349 -3.5064 19 7 -2.3043 -3.0905 -2.2547 20 7 -0.0318 -2.4992 -0.0004 21 1 -0.4850 0.8401 0.0004 22 1 2.9993 -3.8165 -0.0014 23 1 -2.5519 -3.1944 0.5134 24 1 -2.1881 -4.9368 0.5120 25 1 -3.3269 -6.0526 -1.1501 26 1 -4.1387 -6.1948 -3.4955 27 1 -3.7182 -4.2748 -5.0184 28 1 -2.5335 -2.2945 -4.1592 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061798159.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:55 Heat of formation + Delta-G solvation = 49.364710 kcal Electronic energy + Delta-G solvation = -14692.649821 eV Core-core repulsion = 12220.197249 eV Total energy + Delta-G solvation = -2472.452572 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.04765 -39.59172 -35.42756 -34.21544 -33.17661 -31.22816 -28.77450 -27.50098 -24.44580 -24.04722 -22.55768 -20.52703 -19.53130 -17.65864 -17.30561 -16.98089 -16.76191 -16.32549 -15.69750 -15.03740 -14.77915 -14.25408 -14.13000 -13.73247 -13.53722 -13.43591 -12.90216 -12.82078 -12.52670 -12.47914 -12.20835 -11.56201 -11.16409 -10.71626 -10.17210 -9.96942 -9.81585 -9.71960 -9.22670 -8.42841 -6.38230 0.19891 0.47822 0.52318 1.13837 1.35569 1.40080 1.50823 1.77984 2.23290 2.40381 2.93119 3.42045 3.53454 3.77084 3.93570 4.08600 4.28751 4.33192 4.57167 4.68990 4.81406 4.92211 5.02607 5.10853 5.29474 5.32689 5.34843 5.54918 5.90158 6.16229 6.56299 6.88796 7.27948 7.74852 8.44409 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.024976 B = 0.007529 C = 0.006253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.829316 B = 3718.091265 C = 4476.840563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.027 3.973 3 Si 0.990 3.010 4 H -0.264 1.264 5 H -0.264 1.264 6 H -0.258 1.258 7 C -0.474 4.474 8 H 0.080 0.920 9 C 0.197 3.803 10 C -0.495 4.495 11 S 0.003 5.997 12 C 0.075 3.925 13 C 0.013 3.987 14 C 0.113 3.887 15 C -0.163 4.163 16 C -0.074 4.074 17 C -0.171 4.171 18 C 0.072 3.928 19 N -0.510 5.510 20 N -0.421 5.421 21 H 0.279 0.721 22 H 0.132 0.868 23 H 0.094 0.906 24 H 0.132 0.868 25 H 0.167 0.833 26 H 0.176 0.824 27 H 0.166 0.834 28 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.649 -8.099 -5.104 13.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.193 4.193 3 Si 0.810 3.190 4 H -0.188 1.188 5 H -0.188 1.188 6 H -0.182 1.182 7 C -0.508 4.508 8 H 0.098 0.902 9 C 0.074 3.926 10 C -0.634 4.634 11 S 0.251 5.749 12 C -0.210 4.210 13 C -0.029 4.029 14 C -0.026 4.026 15 C -0.183 4.183 16 C -0.099 4.099 17 C -0.190 4.190 18 C -0.085 4.085 19 N -0.219 5.219 20 N -0.134 5.134 21 H 0.089 0.911 22 H 0.150 0.850 23 H 0.112 0.888 24 H 0.150 0.850 25 H 0.185 0.815 26 H 0.193 0.807 27 H 0.184 0.816 28 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.666 -7.788 -4.772 13.298 hybrid contribution 1.004 1.084 -0.305 1.509 sum -8.661 -6.703 -5.077 12.072 Atomic orbital electron populations 1.70243 1.08444 1.29176 1.31805 1.26912 0.95856 1.04365 0.92132 0.85103 0.78852 0.75669 0.79375 1.18842 1.18826 1.18167 1.19308 0.94240 0.89885 1.47383 0.90221 1.18486 0.86687 0.93957 0.93430 1.25277 1.01818 0.95246 1.41039 1.82031 1.00406 1.14454 1.78017 1.28226 0.99771 0.90074 1.02937 1.19258 0.85942 1.04611 0.93064 1.21119 0.95500 0.90886 0.95067 1.22298 0.99198 0.98219 0.98555 1.22025 0.96276 0.99220 0.92417 1.22478 0.99837 0.94116 1.02616 1.23068 0.94903 0.99036 0.91506 1.67514 1.18175 1.30914 1.05334 1.67338 1.11319 1.21585 1.13203 0.91072 0.84995 0.88779 0.85040 0.81504 0.80691 0.81643 0.83016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -44.62 11.69 21.80 0.25 -44.36 15 2 C 0.03 1.51 5.49 85.17 0.47 1.97 15 3 Si 0.99 41.36 29.56 68.60 2.03 43.39 15 4 H -0.26 -10.64 7.11 99.48 0.71 -9.94 15 5 H -0.26 -10.35 7.11 99.48 0.71 -9.64 15 6 H -0.26 -10.43 7.11 99.48 0.71 -9.72 15 7 C -0.47 -28.40 9.23 23.35 0.22 -28.19 15 8 H 0.08 4.57 7.84 -2.91 -0.02 4.55 15 9 C 0.20 11.92 6.47 39.46 0.26 12.17 15 10 C -0.50 -27.52 10.98 67.69 0.74 -26.77 15 11 S 0.00 0.12 23.16 -56.49 -1.31 -1.19 15 12 C 0.07 3.59 6.60 88.55 0.58 4.18 15 13 C 0.01 0.47 6.22 29.10 0.18 0.66 15 14 C 0.11 3.94 6.17 42.55 0.26 4.21 15 15 C -0.16 -3.98 9.71 22.36 0.22 -3.76 15 16 C -0.07 -1.47 10.18 22.47 0.23 -1.24 15 17 C -0.17 -3.85 10.11 22.36 0.23 -3.62 15 18 C 0.07 2.31 11.18 84.67 0.95 3.25 15 19 N -0.51 -20.85 10.01 -183.88 -1.84 -22.69 15 20 N -0.42 -24.36 8.46 -180.35 -1.53 -25.89 15 21 H 0.28 14.62 8.30 -92.71 -0.77 13.85 15 22 H 0.13 7.11 8.06 -2.91 -0.02 7.09 15 23 H 0.09 3.58 8.14 -2.39 -0.02 3.56 15 24 H 0.13 3.52 7.87 -2.39 -0.02 3.50 15 25 H 0.17 2.81 7.95 -2.91 -0.02 2.78 15 26 H 0.18 1.92 8.06 -2.91 -0.02 1.89 15 27 H 0.17 2.42 8.06 -2.91 -0.02 2.40 15 28 H 0.15 4.44 8.06 -2.91 -0.02 4.42 15 Total: -1.00 -76.25 268.89 3.11 -73.14 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 1.17 Total: 14.74 kcal Atomic # 6 Polarization: -41.47 SS G_CDS: 4.33 Total: -37.14 kcal Atomic # 7 Polarization: -89.83 SS G_CDS: -3.11 Total: -92.94 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Atomic # 16 Polarization: 0.12 SS G_CDS: -1.31 Total: -1.19 kcal Total: -76.25 3.11 -73.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061798159.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.501 kcal (2) G-P(sol) polarization free energy of solvation -76.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds