Wall clock time and date at job start Mon Mar 30 2020 05:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31018 * 1 3 3 Si 1.86799 * 120.00341 * 2 1 4 4 H 1.48498 * 109.47231 * 239.99966 * 3 2 1 5 5 H 1.48500 * 109.47061 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46929 * 120.00224 * 3 2 1 7 7 C 1.39731 * 119.99427 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99466 * 180.02562 * 7 2 1 9 9 C 1.41152 * 120.00140 * 359.97438 * 7 2 1 10 10 C 1.37693 * 122.86397 * 180.02562 * 9 7 2 11 11 S 1.70988 * 108.84427 * 179.97438 * 10 9 7 12 12 C 1.75899 * 90.80830 * 359.97438 * 11 10 9 13 13 C 1.50700 * 124.99171 * 179.73361 * 12 11 10 14 14 C 1.50691 * 109.47386 * 270.02410 * 13 12 11 15 15 C 1.38651 * 120.79476 * 269.72506 * 14 13 12 16 16 C 1.38206 * 119.16535 * 179.80128 * 15 14 13 17 17 N 1.31867 * 120.76280 * 0.47826 * 16 15 14 18 18 C 1.31872 * 121.72835 * 359.74876 * 17 16 15 19 19 C 1.38212 * 120.76263 * 0.02562 * 18 17 16 20 20 N 1.28792 * 110.01173 * 0.02562 * 12 11 10 21 21 H 0.97002 * 119.99717 * 359.97438 * 1 2 3 22 22 H 1.08004 * 125.57736 * 359.96245 * 10 9 7 23 23 H 1.09002 * 109.47001 * 30.02956 * 13 12 11 24 24 H 1.09000 * 109.46460 * 150.02465 * 13 12 11 25 25 H 1.07999 * 120.41233 * 359.97438 * 15 14 13 26 26 H 1.07997 * 119.61636 * 180.20438 * 16 15 14 27 27 H 1.07999 * 119.62057 * 180.02562 * 18 17 16 28 28 H 1.07996 * 120.42096 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 3.0980 1.6963 -1.2125 5 1 1.2793 2.7464 0.0006 6 1 3.0981 1.6962 1.2126 7 6 2.0087 -1.2102 -0.0005 8 1 3.0887 -1.2102 -0.0001 9 6 1.3029 -2.4325 -0.0005 10 6 1.9308 -3.6579 -0.0005 11 16 0.7425 -4.8874 0.0002 12 6 -0.5394 -3.6830 0.0012 13 6 -2.0146 -3.9909 -0.0035 14 6 -2.5028 -4.0892 -1.4257 15 6 -2.9814 -2.9708 -2.0909 16 6 -3.4168 -3.0985 -3.3963 17 7 -3.3894 -4.2678 -4.0051 18 6 -2.9452 -5.3533 -3.4022 19 6 -2.4894 -5.3016 -2.0985 20 7 -0.0320 -2.4992 0.0005 21 1 -0.4850 0.8401 0.0004 22 1 2.9991 -3.8166 -0.0011 23 1 -2.1897 -4.9379 0.5071 24 1 -2.5534 -3.1955 0.5114 25 1 -3.0109 -2.0113 -1.5959 26 1 -3.7880 -2.2314 -3.9223 27 1 -2.9376 -6.2937 -3.9334 28 1 -2.1272 -6.1940 -1.6100 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061798201.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:10 Heat of formation + Delta-G solvation = 64.843330 kcal Electronic energy + Delta-G solvation = -14670.179071 eV Core-core repulsion = 12198.397702 eV Total energy + Delta-G solvation = -2471.781369 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.84847 -37.83831 -34.22848 -32.98158 -30.90685 -29.85704 -27.34476 -25.59430 -23.16778 -22.69668 -21.07549 -18.74412 -17.71431 -16.34860 -15.92607 -15.29017 -15.24769 -15.13525 -14.00798 -13.46835 -13.41968 -13.19719 -12.79487 -12.36583 -11.95748 -11.65502 -11.46339 -11.18839 -10.95448 -10.76053 -10.45979 -9.74094 -9.37613 -9.27058 -9.22287 -8.85801 -8.07834 -8.02026 -7.38685 -6.58214 -4.39716 1.42799 1.50816 2.25853 2.86384 3.04823 3.06790 3.09477 3.62931 3.97516 4.08522 4.24354 4.70594 5.01012 5.02146 5.29610 5.40037 5.46481 5.49688 5.73466 5.89189 6.05414 6.16437 6.28472 6.68215 6.76337 6.99928 7.06628 7.21029 7.46314 8.14626 8.21672 8.49914 8.84193 9.53521 10.29412 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.023796 B = 0.007577 C = 0.006218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.392513 B = 3694.304075 C = 4502.194013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.432 4.432 8 H 0.083 0.917 9 C 0.226 3.774 10 C -0.454 4.454 11 S -0.040 6.040 12 C 0.057 3.943 13 C 0.003 3.997 14 C -0.023 4.023 15 C -0.149 4.149 16 C 0.092 3.908 17 N -0.494 5.494 18 C 0.090 3.910 19 C -0.165 4.165 20 N -0.390 5.390 21 H 0.274 0.726 22 H 0.137 0.863 23 H 0.086 0.914 24 H 0.099 0.901 25 H 0.140 0.860 26 H 0.152 0.848 27 H 0.151 0.849 28 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.469 -5.086 -1.708 8.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.149 4.149 3 Si 0.736 3.264 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.466 4.466 8 H 0.101 0.899 9 C 0.104 3.896 10 C -0.593 4.593 11 S 0.208 5.792 12 C -0.227 4.227 13 C -0.038 4.038 14 C -0.033 4.033 15 C -0.169 4.169 16 C -0.065 4.065 17 N -0.204 5.204 18 C -0.067 4.067 19 C -0.185 4.185 20 N -0.103 5.103 21 H 0.085 0.915 22 H 0.155 0.845 23 H 0.105 0.895 24 H 0.117 0.883 25 H 0.158 0.842 26 H 0.169 0.831 27 H 0.168 0.832 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.226 -5.547 -2.556 9.461 hybrid contribution 1.525 1.662 0.873 2.419 sum -5.700 -3.885 -1.683 7.101 Atomic orbital electron populations 1.70084 1.06969 1.28081 1.32374 1.25970 0.94994 1.01008 0.92962 0.86326 0.79969 0.80294 0.79850 1.19003 1.20261 1.18999 1.18933 0.94081 0.88362 1.45255 0.89870 1.17985 0.85309 0.93077 0.93237 1.25084 1.00976 0.93816 1.39432 1.82572 1.02146 1.16444 1.78042 1.27378 0.97551 0.90973 1.06792 1.19052 0.89162 1.03192 0.92393 1.20175 0.93769 0.93151 0.96182 1.22164 0.98873 0.99705 0.96115 1.22680 0.96432 0.95193 0.92147 1.67605 1.15317 0.99346 1.38088 1.22624 0.95079 0.96858 0.92117 1.22039 1.01553 0.98512 0.96416 1.67331 1.12230 1.19518 1.11261 0.91536 0.84534 0.89508 0.88273 0.84221 0.83080 0.83157 0.84951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.82 11.69 55.54 0.65 -19.17 15 2 C 0.07 1.88 5.49 -17.34 -0.10 1.79 15 3 Si 0.91 19.01 29.56 -169.99 -5.02 13.99 15 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 15 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 15 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 15 7 C -0.43 -11.91 9.23 -37.92 -0.35 -12.26 15 8 H 0.08 2.18 7.84 -52.49 -0.41 1.77 15 9 C 0.23 6.28 6.47 -86.17 -0.56 5.72 15 10 C -0.45 -11.68 10.98 30.53 0.34 -11.35 15 11 S -0.04 -0.86 23.16 -107.50 -2.49 -3.35 15 12 C 0.06 1.27 6.81 -13.55 -0.09 1.18 15 13 C 0.00 0.06 6.00 -29.04 -0.17 -0.12 15 14 C -0.02 -0.38 5.15 -104.32 -0.54 -0.92 15 15 C -0.15 -2.44 9.82 -39.44 -0.39 -2.83 15 16 C 0.09 1.42 11.18 -17.55 -0.20 1.22 15 17 N -0.49 -7.89 10.36 -13.25 -0.14 -8.03 15 18 C 0.09 1.29 11.18 -17.54 -0.20 1.09 15 19 C -0.17 -2.43 9.82 -39.44 -0.39 -2.81 15 20 N -0.39 -10.27 8.46 -8.36 -0.07 -10.34 15 21 H 0.27 6.57 8.30 -40.82 -0.34 6.24 15 22 H 0.14 3.38 8.06 -52.48 -0.42 2.96 15 23 H 0.09 1.23 8.10 -51.93 -0.42 0.81 15 24 H 0.10 1.65 8.10 -51.93 -0.42 1.23 15 25 H 0.14 2.30 8.06 -52.49 -0.42 1.88 15 26 H 0.15 1.93 8.06 -52.49 -0.42 1.51 15 27 H 0.15 1.67 8.06 -52.49 -0.42 1.25 15 28 H 0.13 1.66 8.06 -52.49 -0.42 1.24 15 LS Contribution 269.32 15.07 4.06 4.06 Total: -1.00 -30.46 269.32 -8.15 -38.61 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -2.50 Total: 3.52 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: -2.64 Total: -19.29 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.44 Total: -37.54 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.99 kcal Atomic # 16 Polarization: -0.86 SS G_CDS: -2.49 Total: -3.35 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.46 -8.15 -38.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061798201.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.456 kcal (2) G-P(sol) polarization free energy of solvation -30.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds