Wall clock time and date at job start Mon Mar 30 2020 05:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31018 * 1 3 3 Si 1.86799 * 120.00341 * 2 1 4 4 H 1.48498 * 109.47231 * 239.99966 * 3 2 1 5 5 H 1.48500 * 109.47061 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46929 * 120.00224 * 3 2 1 7 7 C 1.39731 * 119.99427 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99466 * 180.02562 * 7 2 1 9 9 C 1.41152 * 120.00140 * 359.97438 * 7 2 1 10 10 C 1.37693 * 122.86397 * 180.02562 * 9 7 2 11 11 S 1.70988 * 108.84427 * 179.97438 * 10 9 7 12 12 C 1.75899 * 90.80830 * 359.97438 * 11 10 9 13 13 C 1.50700 * 124.99171 * 179.73361 * 12 11 10 14 14 C 1.50691 * 109.47386 * 270.02410 * 13 12 11 15 15 C 1.38651 * 120.79476 * 269.72506 * 14 13 12 16 16 C 1.38206 * 119.16535 * 179.80128 * 15 14 13 17 17 N 1.31867 * 120.76280 * 0.47826 * 16 15 14 18 18 C 1.31872 * 121.72835 * 359.74876 * 17 16 15 19 19 C 1.38212 * 120.76263 * 0.02562 * 18 17 16 20 20 N 1.28792 * 110.01173 * 0.02562 * 12 11 10 21 21 H 0.97002 * 119.99717 * 359.97438 * 1 2 3 22 22 H 1.08004 * 125.57736 * 359.96245 * 10 9 7 23 23 H 1.09002 * 109.47001 * 30.02956 * 13 12 11 24 24 H 1.09000 * 109.46460 * 150.02465 * 13 12 11 25 25 H 1.07999 * 120.41233 * 359.97438 * 15 14 13 26 26 H 1.07997 * 119.61636 * 180.20438 * 16 15 14 27 27 H 1.07999 * 119.62057 * 180.02562 * 18 17 16 28 28 H 1.07996 * 120.42096 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 3.0980 1.6963 -1.2125 5 1 1.2793 2.7464 0.0006 6 1 3.0981 1.6962 1.2126 7 6 2.0087 -1.2102 -0.0005 8 1 3.0887 -1.2102 -0.0001 9 6 1.3029 -2.4325 -0.0005 10 6 1.9308 -3.6579 -0.0005 11 16 0.7425 -4.8874 0.0002 12 6 -0.5394 -3.6830 0.0012 13 6 -2.0146 -3.9909 -0.0035 14 6 -2.5028 -4.0892 -1.4257 15 6 -2.9814 -2.9708 -2.0909 16 6 -3.4168 -3.0985 -3.3963 17 7 -3.3894 -4.2678 -4.0051 18 6 -2.9452 -5.3533 -3.4022 19 6 -2.4894 -5.3016 -2.0985 20 7 -0.0320 -2.4992 0.0005 21 1 -0.4850 0.8401 0.0004 22 1 2.9991 -3.8166 -0.0011 23 1 -2.1897 -4.9379 0.5071 24 1 -2.5534 -3.1955 0.5114 25 1 -3.0109 -2.0113 -1.5959 26 1 -3.7880 -2.2314 -3.9223 27 1 -2.9376 -6.2937 -3.9334 28 1 -2.1272 -6.1940 -1.6100 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061798201.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:10 Heat of formation + Delta-G solvation = 46.572901 kcal Electronic energy + Delta-G solvation = -14670.971336 eV Core-core repulsion = 12198.397702 eV Total energy + Delta-G solvation = -2472.573634 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.05269 -39.69044 -35.74967 -34.73187 -32.06584 -31.54522 -28.94964 -27.54824 -24.34567 -24.20639 -22.61958 -20.55644 -19.59975 -17.61406 -17.16079 -17.04784 -16.95408 -16.44833 -15.62713 -15.01962 -14.70969 -14.61459 -14.38586 -13.86528 -13.52098 -13.46881 -12.97163 -12.85504 -12.62402 -12.30776 -12.16660 -11.59733 -11.18473 -10.59664 -10.45092 -10.02167 -9.90482 -9.87142 -9.27405 -8.48422 -6.41160 0.18567 0.27303 0.48801 1.10194 1.36187 1.40528 1.48235 1.73901 2.21755 2.34345 2.89897 3.42065 3.62787 3.66280 3.79835 3.92849 4.25752 4.28957 4.49864 4.70205 4.75126 4.95426 4.96743 5.08178 5.10743 5.30154 5.48863 5.49346 5.83558 6.13730 6.51619 6.85839 7.05144 7.65089 8.40493 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.023796 B = 0.007577 C = 0.006218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.392513 B = 3694.304075 C = 4502.194013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.031 3.969 3 Si 0.987 3.013 4 H -0.263 1.263 5 H -0.264 1.264 6 H -0.261 1.261 7 C -0.474 4.474 8 H 0.079 0.921 9 C 0.197 3.803 10 C -0.493 4.493 11 S 0.023 5.977 12 C 0.064 3.936 13 C 0.006 3.994 14 C -0.039 4.039 15 C -0.165 4.165 16 C 0.086 3.914 17 N -0.510 5.510 18 C 0.089 3.911 19 C -0.163 4.163 20 N -0.433 5.433 21 H 0.282 0.718 22 H 0.133 0.867 23 H 0.122 0.878 24 H 0.099 0.901 25 H 0.129 0.871 26 H 0.171 0.829 27 H 0.185 0.815 28 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.149 -5.820 -2.060 9.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.189 4.189 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.188 1.188 6 H -0.185 1.185 7 C -0.508 4.508 8 H 0.098 0.902 9 C 0.074 3.926 10 C -0.631 4.631 11 S 0.272 5.728 12 C -0.220 4.220 13 C -0.035 4.035 14 C -0.049 4.049 15 C -0.185 4.185 16 C -0.070 4.070 17 N -0.219 5.219 18 C -0.068 4.068 19 C -0.183 4.183 20 N -0.147 5.147 21 H 0.092 0.908 22 H 0.151 0.849 23 H 0.140 0.860 24 H 0.118 0.882 25 H 0.147 0.853 26 H 0.188 0.812 27 H 0.202 0.798 28 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.909 -6.315 -2.905 10.529 hybrid contribution 1.676 1.745 0.959 2.603 sum -6.233 -4.570 -1.946 7.970 Atomic orbital electron populations 1.70159 1.08343 1.29445 1.32220 1.26833 0.95901 1.04172 0.91974 0.85192 0.78650 0.75579 0.79863 1.18698 1.18783 1.18492 1.19283 0.94322 0.89872 1.47347 0.90238 1.18405 0.86551 0.93937 0.93668 1.25358 1.02130 0.95385 1.40254 1.82084 0.99759 1.13851 1.77105 1.28290 0.99889 0.90414 1.03360 1.19238 0.85708 1.04981 0.93613 1.20207 0.94729 0.94056 0.95866 1.22214 0.99936 0.99568 0.96807 1.22986 0.96133 0.95972 0.91884 1.67682 1.15857 0.99859 1.38549 1.23225 0.93672 0.97650 0.92215 1.22327 1.00837 0.98595 0.96545 1.67348 1.11689 1.21656 1.14041 0.90810 0.84878 0.85952 0.88247 0.85260 0.81192 0.79789 0.82422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -41.69 11.69 21.80 0.25 -41.44 15 2 C 0.03 1.62 5.49 85.18 0.47 2.09 15 3 Si 0.99 39.24 29.56 68.60 2.03 41.26 15 4 H -0.26 -10.22 7.11 99.48 0.71 -9.51 15 5 H -0.26 -9.78 7.11 99.48 0.71 -9.07 15 6 H -0.26 -10.07 7.11 99.48 0.71 -9.36 15 7 C -0.47 -26.99 9.23 23.35 0.22 -26.77 15 8 H 0.08 4.35 7.84 -2.91 -0.02 4.33 15 9 C 0.20 11.23 6.47 39.45 0.26 11.48 15 10 C -0.49 -25.78 10.98 67.69 0.74 -25.03 15 11 S 0.02 0.98 23.16 -56.49 -1.31 -0.33 15 12 C 0.06 2.82 6.81 88.55 0.60 3.42 15 13 C 0.01 0.18 6.00 29.10 0.17 0.36 15 14 C -0.04 -1.22 5.15 -19.67 -0.10 -1.32 15 15 C -0.17 -5.36 9.82 22.36 0.22 -5.14 15 16 C 0.09 2.57 11.18 84.68 0.95 3.52 15 17 N -0.51 -15.28 10.36 -195.84 -2.03 -17.31 15 18 C 0.09 2.29 11.18 84.68 0.95 3.24 15 19 C -0.16 -4.32 9.82 22.36 0.22 -4.10 15 20 N -0.43 -23.16 8.46 -180.35 -1.53 -24.69 15 21 H 0.28 13.62 8.30 -92.71 -0.77 12.85 15 22 H 0.13 6.79 8.06 -2.91 -0.02 6.77 15 23 H 0.12 3.05 8.10 -2.39 -0.02 3.04 15 24 H 0.10 3.24 8.10 -2.39 -0.02 3.22 15 25 H 0.13 4.37 8.06 -2.91 -0.02 4.34 15 26 H 0.17 4.19 8.06 -2.91 -0.02 4.16 15 27 H 0.19 3.36 8.06 -2.91 -0.02 3.34 15 28 H 0.16 3.29 8.06 -2.91 -0.02 3.27 15 Total: -1.00 -66.67 269.32 3.28 -63.39 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 1.17 Total: 17.37 kcal Atomic # 6 Polarization: -42.94 SS G_CDS: 4.69 Total: -38.25 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -3.30 Total: -83.44 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.26 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -1.31 Total: -0.33 kcal Total: -66.67 3.28 -63.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061798201.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.958 kcal (2) G-P(sol) polarization free energy of solvation -66.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds