Wall clock time and date at job start Mon Mar 30 2020 05:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31017 * 1 3 3 Si 1.86793 * 120.00501 * 2 1 4 4 H 1.48498 * 109.47220 * 359.97438 * 3 2 1 5 5 H 1.48505 * 109.47405 * 119.99751 * 3 2 1 6 6 H 1.48506 * 109.47020 * 239.99518 * 3 2 1 7 7 C 1.39721 * 119.99478 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00109 * 3.58323 * 7 2 1 9 9 C 1.41165 * 120.00147 * 183.57934 * 7 2 1 10 10 C 1.37693 * 122.86157 * 186.60246 * 9 7 2 11 11 S 1.70997 * 108.83592 * 179.97438 * 10 9 7 12 12 C 1.75891 * 90.80911 * 359.97438 * 11 10 9 13 13 C 1.50700 * 124.98932 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.47242 * 269.97395 * 13 12 11 15 15 C 1.38674 * 120.41754 * 90.00347 * 14 13 12 16 16 C 1.38628 * 118.42473 * 179.97438 * 15 14 13 17 17 C 1.38228 * 119.15808 * 0.02562 * 16 15 14 18 18 N 1.31854 * 120.76573 * 359.97438 * 17 16 15 19 19 C 1.31887 * 121.72200 * 359.70390 * 18 17 16 20 20 N 1.28793 * 110.01555 * 359.76956 * 12 11 10 21 21 H 0.97000 * 120.00685 * 174.86478 * 1 2 3 22 22 H 1.07998 * 125.58469 * 359.95827 * 10 9 7 23 23 H 1.08994 * 109.47398 * 29.98143 * 13 12 11 24 24 H 1.09002 * 109.46724 * 149.97981 * 13 12 11 25 25 H 1.08002 * 120.78842 * 359.97438 * 15 14 13 26 26 H 1.07996 * 120.42021 * 180.02562 * 16 15 14 27 27 H 1.07995 * 119.62017 * 179.97438 * 17 16 15 28 28 H 1.08005 * 119.61517 * 180.31118 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6176 0.0000 4 1 1.2794 2.7464 -0.0006 5 1 3.0980 1.6963 1.2125 6 1 3.0981 1.6961 -1.2125 7 6 2.0087 -1.2101 0.0005 8 1 1.4702 -2.1445 -0.0575 9 6 3.4182 -1.2114 0.0769 10 6 4.1723 -2.3564 -0.0508 11 16 5.8260 -1.9478 0.0984 12 6 5.4127 -0.2532 0.3244 13 6 6.4078 0.8577 0.5405 14 6 6.6639 1.0228 2.0163 15 6 7.6790 0.3103 2.6368 16 6 7.8786 0.4944 3.9962 17 6 7.0646 1.3753 4.6833 18 7 6.1086 2.0361 4.0604 19 6 5.8942 1.8906 2.7672 20 7 4.1349 -0.1005 0.2729 21 1 -0.4851 -0.8366 -0.0752 22 1 3.7831 -3.3499 -0.2176 23 1 7.3417 0.6123 0.0348 24 1 6.0084 1.7872 0.1348 25 1 8.2993 -0.3717 2.0743 26 1 8.6602 -0.0437 4.5119 27 1 7.2133 1.5240 5.7426 28 1 5.1048 2.4528 2.2905 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061798204.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:48 Heat of formation + Delta-G solvation = 51.964721 kcal Electronic energy + Delta-G solvation = -14818.140947 eV Core-core repulsion = 12345.801120 eV Total energy + Delta-G solvation = -2472.339827 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.06716 -38.36115 -34.25284 -33.15163 -31.86734 -29.79801 -27.20255 -25.89083 -23.46951 -22.80136 -20.91460 -19.12807 -18.38423 -16.99807 -16.18175 -16.03968 -15.28247 -14.86550 -13.89478 -13.64785 -13.34503 -13.02015 -12.95718 -12.85891 -12.63979 -12.05968 -11.63956 -11.33472 -10.80306 -10.67069 -10.15316 -9.71484 -9.60959 -9.38897 -9.22118 -8.90974 -8.39383 -8.09582 -7.68625 -7.23155 -4.57906 1.17153 1.37417 1.89392 2.44514 3.32230 3.39301 3.50542 3.89733 3.90876 4.07217 4.32755 4.56963 4.84027 4.93304 4.95389 5.07901 5.15940 5.28573 5.44216 5.68002 5.85226 5.93292 6.16379 6.33319 6.45652 6.81072 6.87167 7.13973 7.55424 8.03050 8.09245 8.14163 8.68274 8.99267 10.10284 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.023198 B = 0.009103 C = 0.007319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.735716 B = 3075.246283 C = 3824.908048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.042 3.958 3 Si 1.127 2.873 4 H -0.317 1.317 5 H -0.272 1.272 6 H -0.288 1.288 7 C -0.478 4.478 8 H 0.080 0.920 9 C 0.211 3.789 10 C -0.452 4.452 11 S 0.015 5.985 12 C 0.077 3.923 13 C 0.002 3.998 14 C -0.124 4.124 15 C -0.066 4.066 16 C -0.176 4.176 17 C 0.091 3.909 18 N -0.485 5.485 19 C 0.117 3.883 20 N -0.477 5.477 21 H 0.282 0.718 22 H 0.141 0.859 23 H 0.094 0.906 24 H 0.100 0.900 25 H 0.134 0.866 26 H 0.133 0.867 27 H 0.152 0.848 28 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.032 2.604 3.962 15.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.177 4.177 3 Si 0.959 3.041 4 H -0.249 1.249 5 H -0.199 1.199 6 H -0.215 1.215 7 C -0.513 4.513 8 H 0.098 0.902 9 C 0.090 3.910 10 C -0.590 4.590 11 S 0.264 5.736 12 C -0.203 4.203 13 C -0.040 4.040 14 C -0.128 4.128 15 C -0.093 4.093 16 C -0.196 4.196 17 C -0.066 4.066 18 N -0.193 5.193 19 C -0.040 4.040 20 N -0.196 5.196 21 H 0.092 0.908 22 H 0.159 0.841 23 H 0.112 0.888 24 H 0.119 0.881 25 H 0.152 0.848 26 H 0.151 0.849 27 H 0.169 0.831 28 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 14.808 4.652 4.515 16.165 hybrid contribution -0.538 -2.896 -0.603 3.006 sum 14.271 1.756 3.912 14.901 Atomic orbital electron populations 1.70711 1.07850 1.32519 1.33316 1.27523 0.95568 1.05385 0.89214 0.82441 0.71832 0.70698 0.79146 1.24853 1.19895 1.21535 1.20060 0.88992 0.96229 1.45973 0.90162 1.18083 0.94950 0.84426 0.93537 1.24973 0.92972 1.02884 1.38190 1.82567 1.11218 1.05542 1.74281 1.27113 0.93649 0.95758 1.03811 1.19079 0.96727 0.96394 0.91780 1.20713 0.96967 0.98287 0.96793 1.21493 0.96257 0.96752 0.94754 1.22075 1.01768 1.00657 0.95085 1.22748 0.91073 0.92683 1.00144 1.67726 1.17683 1.23550 1.10373 1.22840 0.96663 0.95262 0.89269 1.66021 1.04349 1.31378 1.17837 0.90757 0.84092 0.88779 0.88144 0.84779 0.84945 0.83067 0.82404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.34 13.67 55.54 0.76 -22.58 15 2 C 0.04 1.18 5.51 -17.35 -0.10 1.09 15 3 Si 1.13 27.63 25.70 -169.99 -4.37 23.26 15 4 H -0.32 -7.69 7.11 56.52 0.40 -7.29 15 5 H -0.27 -6.43 6.69 56.52 0.38 -6.05 15 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 7 C -0.48 -13.70 9.67 -37.92 -0.37 -14.07 15 8 H 0.08 2.34 8.05 -52.49 -0.42 1.92 15 9 C 0.21 5.64 6.26 -86.17 -0.54 5.10 15 10 C -0.45 -11.09 10.98 30.53 0.34 -10.75 15 11 S 0.02 0.31 23.16 -107.50 -2.49 -2.18 15 12 C 0.08 1.57 6.81 -13.55 -0.09 1.48 15 13 C 0.00 0.03 5.98 -29.04 -0.17 -0.14 15 14 C -0.12 -1.86 5.13 -104.48 -0.54 -2.39 15 15 C -0.07 -0.84 9.86 -39.28 -0.39 -1.23 15 16 C -0.18 -2.03 10.11 -39.44 -0.40 -2.43 15 17 C 0.09 1.17 11.18 -17.55 -0.20 0.97 15 18 N -0.49 -7.80 10.36 -13.25 -0.14 -7.94 15 19 C 0.12 1.90 10.86 -17.55 -0.19 1.71 15 20 N -0.48 -11.67 5.29 -8.36 -0.04 -11.72 15 21 H 0.28 7.72 8.73 -40.82 -0.36 7.37 15 22 H 0.14 3.39 8.06 -52.49 -0.42 2.97 15 23 H 0.09 1.11 8.10 -51.93 -0.42 0.69 15 24 H 0.10 1.43 8.09 -51.93 -0.42 1.01 15 25 H 0.13 1.40 8.06 -52.49 -0.42 0.98 15 26 H 0.13 1.10 8.06 -52.49 -0.42 0.68 15 27 H 0.15 1.47 8.06 -52.49 -0.42 1.05 15 28 H 0.16 2.59 8.06 -52.48 -0.42 2.17 15 LS Contribution 264.71 15.07 3.99 3.99 Total: -1.00 -31.35 264.71 -7.49 -38.83 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -2.55 Total: -1.00 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: -2.64 Total: -20.66 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.58 Total: -42.24 kcal Atomic # 14 Polarization: 27.63 SS G_CDS: -4.37 Total: 23.26 kcal Atomic # 16 Polarization: 0.31 SS G_CDS: -2.49 Total: -2.18 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.35 -7.49 -38.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061798204.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.796 kcal (2) G-P(sol) polarization free energy of solvation -31.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds