Wall clock time and date at job start Mon Mar 30 2020 05:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38423 * 120.47510 * 2 1 4 4 C 1.38751 * 118.52378 * 180.26319 * 3 2 1 5 5 C 1.38401 * 119.39857 * 359.73239 * 4 3 2 6 6 N 1.31637 * 120.91969 * 359.97438 * 5 4 3 7 7 C 1.32874 * 121.59760 * 0.02562 * 6 5 4 8 8 C 1.47804 * 119.74388 * 179.97438 * 7 6 5 9 9 N 1.29824 * 125.05989 * 136.14208 * 8 7 6 10 10 C 1.32679 * 116.03114 * 180.21818 * 9 8 7 11 11 C 1.41182 * 122.77465 * 179.76008 * 10 9 8 12 12 H 1.08001 * 119.99782 * 169.00852 * 11 10 9 13 13 C 1.39677 * 119.99680 * 349.01052 * 11 10 9 14 14 N 1.31025 * 119.99998 * 335.48810 * 13 11 10 15 15 Si 1.86808 * 119.99855 * 155.49270 * 13 11 10 16 16 H 1.48493 * 109.46919 * 269.99777 * 15 13 11 17 17 H 1.48497 * 109.46808 * 29.99584 * 15 13 11 18 18 H 1.48498 * 109.46864 * 149.99492 * 15 13 11 19 19 C 1.38037 * 114.45390 * 359.48790 * 10 9 8 20 20 S 1.71005 * 108.87453 * 0.27118 * 19 10 9 21 21 H 1.09005 * 109.47330 * 264.80226 * 1 2 3 22 22 H 1.09000 * 109.46953 * 24.80193 * 1 2 3 23 23 H 1.09000 * 109.47389 * 144.80412 * 1 2 3 24 24 H 1.07998 * 120.74236 * 359.97438 * 3 2 1 25 25 H 1.07999 * 120.30191 * 179.70753 * 4 3 2 26 26 H 1.08009 * 119.54392 * 180.02562 * 5 4 3 27 27 H 0.96996 * 120.00401 * 354.49646 * 14 13 11 28 28 H 1.07999 * 125.56533 * 180.23300 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1930 0.0000 4 6 3.5957 1.1458 -0.0056 5 6 4.2337 -0.0825 -0.0054 6 7 3.5433 -1.2032 0.0006 7 6 2.2145 -1.2024 0.0061 8 6 1.4805 -2.4853 0.0121 9 7 0.4481 -2.7503 0.7533 10 6 -0.0702 -3.9640 0.6173 11 6 -1.1899 -4.4042 1.3562 12 1 -1.6842 -5.3266 1.0894 13 6 -1.6581 -3.6465 2.4322 14 7 -0.8474 -2.8330 3.0627 15 14 -3.4404 -3.7934 2.9723 16 1 -4.2640 -2.8008 2.2363 17 1 -3.9353 -5.1623 2.6788 18 1 -3.5384 -3.5337 4.4311 19 6 0.5720 -4.7589 -0.3106 20 16 1.8708 -3.8778 -0.9895 21 1 -0.3634 -0.0931 1.0235 22 1 -0.3633 0.9329 -0.4311 23 1 -0.3634 -0.8398 -0.5923 24 1 1.6890 2.1396 -0.0004 25 1 4.1720 2.0591 -0.0105 26 1 5.3130 -0.1220 -0.0093 27 1 0.0954 -2.8151 2.8352 28 1 0.2992 -5.7723 -0.5658 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061798237.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:00 Heat of formation + Delta-G solvation = 59.826175 kcal Electronic energy + Delta-G solvation = -14944.736840 eV Core-core repulsion = 12472.737911 eV Total energy + Delta-G solvation = -2471.998929 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.96576 -38.00524 -33.59848 -33.17302 -31.96675 -28.89714 -27.08267 -25.26318 -24.49546 -22.13534 -21.49461 -19.27602 -17.88317 -16.59407 -16.14824 -15.61195 -14.87689 -14.09471 -14.03943 -13.64893 -13.14822 -12.94023 -12.66084 -12.29374 -12.09260 -11.85725 -11.70388 -11.22552 -11.05065 -10.51328 -10.37343 -9.79832 -9.55537 -9.28261 -8.97414 -8.78397 -8.45482 -8.11328 -7.44944 -7.03189 -4.40989 1.03154 1.49402 2.18146 2.71566 3.18135 3.20347 3.38779 3.53444 3.98187 4.10943 4.15404 4.48518 4.96474 5.00001 5.17710 5.24793 5.33704 5.59595 5.81765 5.94508 6.18240 6.25154 6.46616 6.52001 6.63507 6.95668 6.98577 7.30318 7.84071 7.95371 8.19418 8.58739 8.68235 9.31496 10.23004 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.026125 B = 0.008225 C = 0.006740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.510855 B = 3403.428323 C = 4153.491254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.092 4.092 3 C -0.083 4.083 4 C -0.173 4.173 5 C 0.090 3.910 6 N -0.467 5.467 7 C 0.209 3.791 8 C 0.088 3.912 9 N -0.439 5.439 10 C 0.214 3.786 11 C -0.495 4.495 12 H 0.081 0.919 13 C 0.040 3.960 14 N -0.778 5.778 15 Si 1.072 2.928 16 H -0.276 1.276 17 H -0.278 1.278 18 H -0.278 1.278 19 C -0.462 4.462 20 S 0.047 5.953 21 H 0.087 0.913 22 H 0.057 0.943 23 H 0.073 0.927 24 H 0.134 0.866 25 H 0.133 0.867 26 H 0.156 0.844 27 H 0.305 0.695 28 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.052 7.936 -4.300 9.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.097 4.097 3 C -0.109 4.109 4 C -0.194 4.194 5 C -0.069 4.069 6 N -0.177 5.177 7 C 0.069 3.931 8 C -0.190 4.190 9 N -0.158 5.158 10 C 0.091 3.909 11 C -0.529 4.529 12 H 0.099 0.901 13 C -0.186 4.186 14 N -0.402 5.402 15 Si 0.896 3.104 16 H -0.202 1.202 17 H -0.203 1.203 18 H -0.203 1.203 19 C -0.602 4.602 20 S 0.298 5.702 21 H 0.105 0.895 22 H 0.076 0.924 23 H 0.091 0.909 24 H 0.152 0.848 25 H 0.150 0.850 26 H 0.173 0.827 27 H 0.120 0.880 28 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.948 7.854 -3.594 9.497 hybrid contribution 0.102 -0.261 -0.614 0.675 sum 4.051 7.594 -4.208 9.580 Atomic orbital electron populations 1.20718 0.89369 1.01817 1.04171 1.20917 0.98160 0.92409 0.98175 1.21405 0.94056 0.97762 0.97678 1.22140 0.95169 0.99423 1.02656 1.22628 1.00034 0.87381 0.96855 1.67640 1.07152 1.31405 1.11458 1.18622 0.88440 0.89793 0.96211 1.24899 0.97813 0.95828 1.00493 1.67175 1.08021 1.19611 1.21037 1.17851 0.94184 0.85126 0.93784 1.19878 1.10333 1.09335 1.13314 0.90073 1.26893 1.06550 0.92142 0.92972 1.70324 1.08739 1.28176 1.32915 0.83545 0.72824 0.77168 0.76889 1.20168 1.20317 1.20291 1.25356 1.09608 1.06010 1.19193 1.82682 1.33729 1.09296 1.44506 0.89483 0.92378 0.90858 0.84765 0.84955 0.82727 0.88034 0.84106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.87 8.89 36.01 0.32 -1.55 15 2 C -0.09 -1.66 5.93 -104.08 -0.62 -2.28 15 3 C -0.08 -1.18 9.83 -39.32 -0.39 -1.56 15 4 C -0.17 -2.20 10.11 -39.33 -0.40 -2.59 15 5 C 0.09 1.32 11.18 -17.57 -0.20 1.12 15 6 N -0.47 -8.99 10.31 -9.84 -0.10 -9.10 15 7 C 0.21 4.36 6.72 -83.03 -0.56 3.80 15 8 C 0.09 2.11 6.25 -14.49 -0.09 2.02 15 9 N -0.44 -11.63 6.63 -9.16 -0.06 -11.69 15 10 C 0.21 5.93 6.16 -86.46 -0.53 5.39 15 11 C -0.49 -13.69 9.13 -37.93 -0.35 -14.03 15 12 H 0.08 2.17 7.95 -52.49 -0.42 1.76 15 13 C 0.04 1.04 5.32 -17.36 -0.09 0.95 15 14 N -0.78 -21.64 13.17 55.53 0.73 -20.90 15 15 Si 1.07 22.22 30.00 -169.99 -5.10 17.12 15 16 H -0.28 -5.54 7.11 56.52 0.40 -5.13 15 17 H -0.28 -5.46 7.11 56.52 0.40 -5.06 15 18 H -0.28 -5.66 7.11 56.52 0.40 -5.26 15 19 C -0.46 -11.97 10.99 30.66 0.34 -11.63 15 20 S 0.05 1.09 23.15 -107.50 -2.49 -1.40 15 21 H 0.09 1.74 8.14 -51.93 -0.42 1.32 15 22 H 0.06 0.83 8.06 -51.93 -0.42 0.41 15 23 H 0.07 1.50 6.95 -51.93 -0.36 1.13 15 24 H 0.13 1.47 8.06 -52.49 -0.42 1.05 15 25 H 0.13 1.17 8.06 -52.49 -0.42 0.75 15 26 H 0.16 1.70 8.06 -52.48 -0.42 1.28 15 27 H 0.30 8.87 6.53 -40.82 -0.27 8.60 15 28 H 0.14 3.49 8.06 -52.49 -0.42 3.07 15 LS Contribution 264.94 15.07 3.99 3.99 Total: -1.00 -30.45 264.94 -7.96 -38.41 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -2.37 Total: 3.92 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -2.56 Total: -20.36 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: 0.57 Total: -41.69 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.10 Total: 17.12 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.49 Total: -1.40 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.45 -7.96 -38.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061798237.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.241 kcal (2) G-P(sol) polarization free energy of solvation -30.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds