Wall clock time and date at job start Mon Mar 30 2020 05:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38423 * 120.47510 * 2 1 4 4 C 1.38751 * 118.52378 * 180.26319 * 3 2 1 5 5 C 1.38401 * 119.39857 * 359.73239 * 4 3 2 6 6 N 1.31637 * 120.91969 * 359.97438 * 5 4 3 7 7 C 1.32874 * 121.59760 * 0.02562 * 6 5 4 8 8 C 1.47804 * 119.74388 * 179.97438 * 7 6 5 9 9 N 1.29824 * 125.05989 * 136.14208 * 8 7 6 10 10 C 1.32679 * 116.03114 * 180.21818 * 9 8 7 11 11 C 1.41182 * 122.77465 * 179.76008 * 10 9 8 12 12 H 1.08001 * 119.99782 * 169.00852 * 11 10 9 13 13 C 1.39677 * 119.99680 * 349.01052 * 11 10 9 14 14 N 1.31025 * 119.99998 * 335.48810 * 13 11 10 15 15 Si 1.86808 * 119.99855 * 155.49270 * 13 11 10 16 16 H 1.48493 * 109.46919 * 269.99777 * 15 13 11 17 17 H 1.48497 * 109.46808 * 29.99584 * 15 13 11 18 18 H 1.48498 * 109.46864 * 149.99492 * 15 13 11 19 19 C 1.38037 * 114.45390 * 359.48790 * 10 9 8 20 20 S 1.71005 * 108.87453 * 0.27118 * 19 10 9 21 21 H 1.09005 * 109.47330 * 264.80226 * 1 2 3 22 22 H 1.09000 * 109.46953 * 24.80193 * 1 2 3 23 23 H 1.09000 * 109.47389 * 144.80412 * 1 2 3 24 24 H 1.07998 * 120.74236 * 359.97438 * 3 2 1 25 25 H 1.07999 * 120.30191 * 179.70753 * 4 3 2 26 26 H 1.08009 * 119.54392 * 180.02562 * 5 4 3 27 27 H 0.96996 * 120.00401 * 354.49646 * 14 13 11 28 28 H 1.07999 * 125.56533 * 180.23300 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1930 0.0000 4 6 3.5957 1.1458 -0.0056 5 6 4.2337 -0.0825 -0.0054 6 7 3.5433 -1.2032 0.0006 7 6 2.2145 -1.2024 0.0061 8 6 1.4805 -2.4853 0.0121 9 7 0.4481 -2.7503 0.7533 10 6 -0.0702 -3.9640 0.6173 11 6 -1.1899 -4.4042 1.3562 12 1 -1.6842 -5.3266 1.0894 13 6 -1.6581 -3.6465 2.4322 14 7 -0.8474 -2.8330 3.0627 15 14 -3.4404 -3.7934 2.9723 16 1 -4.2640 -2.8008 2.2363 17 1 -3.9353 -5.1623 2.6788 18 1 -3.5384 -3.5337 4.4311 19 6 0.5720 -4.7589 -0.3106 20 16 1.8708 -3.8778 -0.9895 21 1 -0.3634 -0.0931 1.0235 22 1 -0.3633 0.9329 -0.4311 23 1 -0.3634 -0.8398 -0.5923 24 1 1.6890 2.1396 -0.0004 25 1 4.1720 2.0591 -0.0105 26 1 5.3130 -0.1220 -0.0093 27 1 0.0954 -2.8151 2.8352 28 1 0.2992 -5.7723 -0.5658 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061798237.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:00 Heat of formation + Delta-G solvation = 40.666207 kcal Electronic energy + Delta-G solvation = -14945.567679 eV Core-core repulsion = 12472.737911 eV Total energy + Delta-G solvation = -2472.829767 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.29873 -39.88853 -35.43405 -34.58557 -33.39008 -30.73104 -28.47929 -27.30406 -26.04953 -23.55293 -23.00388 -21.05628 -19.80343 -18.23759 -17.55461 -17.22658 -16.17950 -15.76223 -15.56448 -15.22293 -14.97898 -14.47540 -14.04875 -13.78485 -13.75670 -13.57867 -13.35338 -12.78466 -12.59390 -12.39751 -11.97385 -11.63357 -10.94320 -10.77449 -10.69831 -10.43741 -10.20714 -9.91068 -9.31578 -9.10322 -6.51728 -0.43340 0.29142 0.44146 0.92843 1.48398 1.51235 1.57778 1.79888 2.21018 2.36214 2.71062 3.01415 3.24326 3.71866 3.88303 4.05098 4.09798 4.36294 4.54398 4.67556 4.72357 4.76616 4.94892 5.13750 5.18058 5.24463 5.33286 5.71773 5.75003 5.80094 6.51590 6.65890 6.92734 7.33211 8.10382 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.026125 B = 0.008225 C = 0.006740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.510855 B = 3403.428323 C = 4153.491254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.106 4.106 3 C -0.076 4.076 4 C -0.143 4.143 5 C 0.085 3.915 6 N -0.498 5.498 7 C 0.159 3.841 8 C 0.096 3.904 9 N -0.468 5.468 10 C 0.188 3.812 11 C -0.529 4.529 12 H 0.078 0.922 13 C 0.005 3.995 14 N -0.798 5.798 15 Si 1.126 2.874 16 H -0.264 1.264 17 H -0.261 1.261 18 H -0.269 1.269 19 C -0.491 4.491 20 S 0.083 5.917 21 H 0.058 0.942 22 H 0.098 0.902 23 H 0.037 0.963 24 H 0.175 0.825 25 H 0.187 0.813 26 H 0.194 0.806 27 H 0.286 0.714 28 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.010 10.847 -4.613 12.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.101 4.101 4 C -0.163 4.163 5 C -0.075 4.075 6 N -0.209 5.209 7 C 0.021 3.979 8 C -0.183 4.183 9 N -0.187 5.187 10 C 0.064 3.936 11 C -0.563 4.563 12 H 0.096 0.904 13 C -0.214 4.214 14 N -0.420 5.420 15 Si 0.943 3.057 16 H -0.188 1.188 17 H -0.185 1.185 18 H -0.194 1.194 19 C -0.630 4.630 20 S 0.335 5.665 21 H 0.077 0.923 22 H 0.117 0.883 23 H 0.056 0.944 24 H 0.193 0.807 25 H 0.204 0.796 26 H 0.210 0.790 27 H 0.099 0.901 28 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.922 10.735 -3.933 12.447 hybrid contribution 0.069 -1.006 -0.619 1.184 sum 4.991 9.728 -4.552 11.844 Atomic orbital electron populations 1.20582 0.90139 1.02400 1.02020 1.21030 0.97905 0.93176 0.99052 1.21897 0.94957 0.97560 0.95704 1.22734 0.94757 1.00604 0.98202 1.23425 1.01702 0.87060 0.95291 1.67538 1.06496 1.34212 1.12608 1.18539 0.89507 0.89089 1.00737 1.25694 0.96791 0.97278 0.98534 1.67200 1.09716 1.19245 1.22559 1.18251 0.94756 0.86162 0.94391 1.20165 1.11387 1.10159 1.14620 0.90373 1.28472 1.10147 0.90645 0.92144 1.70439 1.07942 1.29709 1.33949 0.82902 0.67569 0.78316 0.76951 1.18848 1.18505 1.19375 1.25577 1.11028 1.06554 1.19849 1.82306 1.32020 1.08488 1.43701 0.92336 0.88306 0.94369 0.80720 0.79560 0.78960 0.90076 0.84032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.42 8.89 71.24 0.63 -2.79 15 2 C -0.11 -3.72 5.93 -19.51 -0.12 -3.84 15 3 C -0.08 -1.80 9.83 22.44 0.22 -1.58 15 4 C -0.14 -2.81 10.11 22.43 0.23 -2.58 15 5 C 0.08 2.15 11.18 84.76 0.95 3.09 15 6 N -0.50 -18.56 10.31 -185.03 -1.91 -20.47 15 7 C 0.16 6.64 6.72 41.83 0.28 6.93 15 8 C 0.10 4.77 6.25 87.52 0.55 5.32 15 9 N -0.47 -26.09 6.63 -182.90 -1.21 -27.30 15 10 C 0.19 10.99 6.16 39.69 0.24 11.24 15 11 C -0.53 -30.74 9.13 23.34 0.21 -30.53 15 12 H 0.08 4.40 7.95 -2.91 -0.02 4.38 15 13 C 0.01 0.28 5.32 85.16 0.45 0.74 15 14 N -0.80 -46.09 13.17 21.79 0.29 -45.80 15 15 Si 1.13 45.24 30.00 68.60 2.06 47.30 15 16 H -0.26 -10.01 7.11 99.48 0.71 -9.30 15 17 H -0.26 -9.66 7.11 99.48 0.71 -8.95 15 18 H -0.27 -10.36 7.11 99.48 0.71 -9.66 15 19 C -0.49 -26.71 10.99 67.77 0.75 -25.97 15 20 S 0.08 3.95 23.15 -56.49 -1.31 2.64 15 21 H 0.06 2.43 8.14 -2.38 -0.02 2.41 15 22 H 0.10 2.63 8.06 -2.39 -0.02 2.61 15 23 H 0.04 1.62 6.95 -2.39 -0.02 1.60 15 24 H 0.18 2.75 8.06 -2.91 -0.02 2.72 15 25 H 0.19 1.75 8.06 -2.91 -0.02 1.73 15 26 H 0.19 3.27 8.06 -2.91 -0.02 3.25 15 27 H 0.29 17.57 6.53 -92.71 -0.61 16.97 15 28 H 0.14 7.41 8.06 -2.91 -0.02 7.39 15 Total: -1.00 -72.13 264.94 3.66 -68.48 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 1.34 Total: 15.14 kcal Atomic # 6 Polarization: -44.37 SS G_CDS: 4.40 Total: -39.98 kcal Atomic # 7 Polarization: -90.74 SS G_CDS: -2.83 Total: -93.57 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.06 Total: 47.30 kcal Atomic # 16 Polarization: 3.95 SS G_CDS: -1.31 Total: 2.64 kcal Total: -72.13 3.66 -68.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061798237.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.142 kcal (2) G-P(sol) polarization free energy of solvation -72.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds