Wall clock time and date at job start Mon Mar 30 2020 05:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30718 * 1 3 3 Si 1.86795 * 120.00278 * 2 1 4 4 H 1.48500 * 109.46937 * 274.98366 * 3 2 1 5 5 H 1.48504 * 109.46926 * 34.97948 * 3 2 1 6 6 H 1.48499 * 109.47364 * 154.98101 * 3 2 1 7 7 C 1.40070 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99971 * 186.27304 * 7 2 1 9 9 C 1.41359 * 120.00066 * 6.25982 * 7 2 1 10 10 C 1.40805 * 120.20634 * 173.76174 * 9 7 2 11 11 N 1.31800 * 119.73492 * 179.73232 * 10 9 7 12 12 C 1.32373 * 120.18273 * 0.52542 * 11 10 9 13 13 C 1.50698 * 119.78737 * 179.72489 * 12 11 10 14 14 C 1.50700 * 109.47044 * 304.72689 * 13 12 11 15 15 C 1.33388 * 125.20226 * 89.71780 * 14 13 12 16 16 C 1.38419 * 114.92383 * 179.85738 * 15 14 13 17 17 C 1.33394 * 114.91671 * 0.43216 * 16 15 14 18 18 S 1.75881 * 125.20269 * 270.02526 * 14 13 12 19 19 C 1.38878 * 120.42526 * 359.44945 * 12 11 10 20 20 N 1.31730 * 120.25784 * 0.30042 * 19 12 11 21 21 H 0.96998 * 119.99855 * 0.02562 * 1 2 3 22 22 H 1.07996 * 120.13231 * 0.02562 * 10 9 7 23 23 H 1.08998 * 109.47005 * 184.72472 * 13 12 11 24 24 H 1.09005 * 109.47147 * 64.72718 * 13 12 11 25 25 H 1.08004 * 122.53751 * 0.02562 * 15 14 13 26 26 H 1.07996 * 122.54772 * 180.19995 * 16 15 14 27 27 H 1.08004 * 125.20182 * 179.78782 * 17 16 15 28 28 H 1.07999 * 119.87409 * 180.27438 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6176 0.0000 4 1 2.3834 2.1071 -1.3948 5 1 1.4953 2.6199 0.8027 6 1 3.5874 1.4120 0.5921 7 6 2.0075 -1.2131 0.0005 8 1 3.0827 -1.2158 0.1027 9 6 1.3070 -2.4337 -0.1324 10 6 2.0129 -3.6448 -0.2642 11 7 1.3504 -4.7781 -0.3823 12 6 0.0267 -4.7777 -0.3875 13 6 -0.7218 -6.0780 -0.5292 14 6 -0.2642 -6.7875 -1.7775 15 6 0.7478 -7.6541 -1.8422 16 6 0.9830 -8.1834 -3.0994 17 6 0.1677 -7.7397 -4.0575 18 16 -0.9779 -6.5938 -3.3733 19 6 -0.6768 -3.5874 -0.2574 20 7 -0.0319 -2.4454 -0.1335 21 1 -0.4850 0.8400 -0.0004 22 1 3.0929 -3.6457 -0.2639 23 1 -1.7908 -5.8763 -0.5970 24 1 -0.5251 -6.7069 0.3391 25 1 1.3372 -7.9245 -0.9785 26 1 1.7694 -8.8984 -3.2910 27 1 0.2052 -8.0386 -5.0947 28 1 -1.7567 -3.5979 -0.2584 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074115388.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:54 Heat of formation + Delta-G solvation = 65.677030 kcal Electronic energy + Delta-G solvation = -14499.404500 eV Core-core repulsion = 12027.659284 eV Total energy + Delta-G solvation = -2471.745217 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.06523 -37.38890 -34.31458 -32.54119 -31.76593 -29.57733 -27.08004 -24.75665 -22.98033 -22.52500 -20.99090 -18.79902 -17.64457 -16.70974 -15.93128 -15.17281 -15.04263 -14.59117 -14.13424 -13.36509 -12.81415 -12.71889 -12.43401 -12.27533 -11.84071 -11.53228 -11.43907 -11.31414 -11.06925 -10.75930 -10.38142 -10.32824 -9.76289 -9.51200 -9.11958 -8.25934 -8.09293 -7.78025 -7.40845 -6.54800 -4.71494 1.41560 2.03022 2.40002 2.47525 2.95627 2.99875 3.03441 3.11106 3.21550 3.81037 4.57675 5.28791 5.38466 5.48497 5.71485 5.80832 5.94622 5.96602 6.01775 6.22383 6.37880 6.52033 6.56459 6.73881 6.89356 6.92014 7.01304 7.20587 7.61263 7.99054 8.37760 8.62038 9.23825 9.82389 10.08856 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.042135 B = 0.005284 C = 0.005232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.364821 B = 5298.125546 C = 5350.137226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.709 5.709 2 C 0.065 3.935 3 Si 0.913 3.087 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.412 4.412 8 H 0.091 0.909 9 C 0.204 3.796 10 C -0.059 4.059 11 N -0.415 5.415 12 C -0.100 4.100 13 C 0.031 3.969 14 C -0.128 4.128 15 C -0.144 4.144 16 C -0.127 4.127 17 C -0.234 4.234 18 S 0.076 5.924 19 C 0.094 3.906 20 N -0.456 5.456 21 H 0.277 0.723 22 H 0.132 0.868 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.137 0.863 26 H 0.132 0.868 27 H 0.156 0.844 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.289 -7.845 -3.658 8.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.329 5.329 2 C -0.162 4.162 3 Si 0.737 3.263 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.443 4.443 8 H 0.109 0.891 9 C 0.079 3.921 10 C -0.230 4.230 11 N -0.127 5.127 12 C -0.239 4.239 13 C -0.010 4.010 14 C -0.246 4.246 15 C -0.173 4.173 16 C -0.158 4.158 17 C -0.369 4.369 18 S 0.338 5.662 19 C -0.075 4.075 20 N -0.173 5.173 21 H 0.089 0.911 22 H 0.150 0.850 23 H 0.091 0.909 24 H 0.095 0.905 25 H 0.155 0.845 26 H 0.150 0.850 27 H 0.173 0.827 28 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.702 -6.844 -4.239 8.492 hybrid contribution 1.625 -0.037 0.394 1.673 sum -1.077 -6.880 -3.846 7.955 Atomic orbital electron populations 1.70085 1.07416 1.28453 1.26963 1.26169 0.94998 1.01518 0.93508 0.86210 0.80544 0.80289 0.79285 1.19257 1.19918 1.18239 1.19697 0.95040 0.89308 1.40281 0.89128 1.19444 0.89339 0.93392 0.89957 1.23126 0.99075 0.89170 1.11639 1.67416 1.08166 1.30239 1.06884 1.20756 0.91103 0.94039 1.18022 1.18597 0.97646 0.92855 0.91897 1.24542 1.00981 1.01310 0.97749 1.20005 0.98873 1.00050 0.98349 1.20127 1.00787 1.02252 0.92628 1.25419 1.03229 1.05216 1.03085 1.84179 1.35515 1.44014 1.02486 1.23261 0.99599 0.89644 0.94961 1.69554 1.08093 1.24089 1.15541 0.91144 0.85046 0.90856 0.90477 0.84550 0.85009 0.82675 0.85635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.29 11.52 55.55 0.64 -17.65 15 2 C 0.06 1.59 5.49 -17.34 -0.10 1.49 15 3 Si 0.91 17.85 29.56 -169.99 -5.03 12.82 15 4 H -0.27 -5.20 7.11 56.52 0.40 -4.79 15 5 H -0.27 -5.25 7.11 56.52 0.40 -4.85 15 6 H -0.26 -4.93 7.11 56.52 0.40 -4.53 15 7 C -0.41 -10.62 9.16 -37.71 -0.35 -10.97 15 8 H 0.09 2.15 7.86 -52.49 -0.41 1.74 15 9 C 0.20 5.50 6.54 -84.81 -0.55 4.95 15 10 C -0.06 -1.47 10.99 -16.60 -0.18 -1.65 15 11 N -0.41 -9.99 10.16 -8.58 -0.09 -10.08 15 12 C -0.10 -2.25 6.18 -82.12 -0.51 -2.76 15 13 C 0.03 0.55 6.12 -29.04 -0.18 0.37 15 14 C -0.13 -2.24 5.55 -36.00 -0.20 -2.44 15 15 C -0.14 -2.38 10.05 -41.21 -0.41 -2.79 15 16 C -0.13 -1.86 10.18 -41.21 -0.42 -2.27 15 17 C -0.23 -3.34 11.23 29.04 0.33 -3.02 15 18 S 0.08 1.20 23.33 -107.50 -2.51 -1.31 15 19 C 0.09 2.25 10.84 -17.36 -0.19 2.07 15 20 N -0.46 -12.40 8.08 -10.94 -0.09 -12.48 15 21 H 0.28 6.43 8.29 -40.82 -0.34 6.10 15 22 H 0.13 3.00 8.06 -52.49 -0.42 2.58 15 23 H 0.07 1.16 7.88 -51.93 -0.41 0.75 15 24 H 0.08 1.29 8.14 -51.93 -0.42 0.87 15 25 H 0.14 2.18 8.06 -52.48 -0.42 1.75 15 26 H 0.13 1.58 8.06 -52.49 -0.42 1.16 15 27 H 0.16 1.78 8.06 -52.48 -0.42 1.36 15 28 H 0.13 2.62 7.95 -52.49 -0.42 2.20 15 LS Contribution 268.63 15.07 4.05 4.05 Total: -1.00 -29.08 268.63 -8.27 -37.35 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -2.49 Total: 4.33 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -2.76 Total: -17.03 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.46 Total: -40.21 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.82 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.51 Total: -1.31 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.08 -8.27 -37.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074115388.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.025 kcal (2) G-P(sol) polarization free energy of solvation -29.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds