Wall clock time and date at job start Mon Mar 30 2020 05:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30718 * 1 3 3 Si 1.86795 * 120.00278 * 2 1 4 4 H 1.48500 * 109.46937 * 274.98366 * 3 2 1 5 5 H 1.48504 * 109.46926 * 34.97948 * 3 2 1 6 6 H 1.48499 * 109.47364 * 154.98101 * 3 2 1 7 7 C 1.40070 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99971 * 186.27304 * 7 2 1 9 9 C 1.41359 * 120.00066 * 6.25982 * 7 2 1 10 10 C 1.40805 * 120.20634 * 173.76174 * 9 7 2 11 11 N 1.31800 * 119.73492 * 179.73232 * 10 9 7 12 12 C 1.32373 * 120.18273 * 0.52542 * 11 10 9 13 13 C 1.50698 * 119.78737 * 179.72489 * 12 11 10 14 14 C 1.50700 * 109.47044 * 304.72689 * 13 12 11 15 15 C 1.33388 * 125.20226 * 89.71780 * 14 13 12 16 16 C 1.38419 * 114.92383 * 179.85738 * 15 14 13 17 17 C 1.33394 * 114.91671 * 0.43216 * 16 15 14 18 18 S 1.75881 * 125.20269 * 270.02526 * 14 13 12 19 19 C 1.38878 * 120.42526 * 359.44945 * 12 11 10 20 20 N 1.31730 * 120.25784 * 0.30042 * 19 12 11 21 21 H 0.96998 * 119.99855 * 0.02562 * 1 2 3 22 22 H 1.07996 * 120.13231 * 0.02562 * 10 9 7 23 23 H 1.08998 * 109.47005 * 184.72472 * 13 12 11 24 24 H 1.09005 * 109.47147 * 64.72718 * 13 12 11 25 25 H 1.08004 * 122.53751 * 0.02562 * 15 14 13 26 26 H 1.07996 * 122.54772 * 180.19995 * 16 15 14 27 27 H 1.08004 * 125.20182 * 179.78782 * 17 16 15 28 28 H 1.07999 * 119.87409 * 180.27438 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6176 0.0000 4 1 2.3834 2.1071 -1.3948 5 1 1.4953 2.6199 0.8027 6 1 3.5874 1.4120 0.5921 7 6 2.0075 -1.2131 0.0005 8 1 3.0827 -1.2158 0.1027 9 6 1.3070 -2.4337 -0.1324 10 6 2.0129 -3.6448 -0.2642 11 7 1.3504 -4.7781 -0.3823 12 6 0.0267 -4.7777 -0.3875 13 6 -0.7218 -6.0780 -0.5292 14 6 -0.2642 -6.7875 -1.7775 15 6 0.7478 -7.6541 -1.8422 16 6 0.9830 -8.1834 -3.0994 17 6 0.1677 -7.7397 -4.0575 18 16 -0.9779 -6.5938 -3.3733 19 6 -0.6768 -3.5874 -0.2574 20 7 -0.0319 -2.4454 -0.1335 21 1 -0.4850 0.8400 -0.0004 22 1 3.0929 -3.6457 -0.2639 23 1 -1.7908 -5.8763 -0.5970 24 1 -0.5251 -6.7069 0.3391 25 1 1.3372 -7.9245 -0.9785 26 1 1.7694 -8.8984 -3.2910 27 1 0.2052 -8.0386 -5.0947 28 1 -1.7567 -3.5979 -0.2584 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074115388.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:53 Heat of formation + Delta-G solvation = 49.034300 kcal Electronic energy + Delta-G solvation = -14500.126183 eV Core-core repulsion = 12027.659284 eV Total energy + Delta-G solvation = -2472.466900 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.91912 -38.63991 -36.11162 -34.22270 -33.57382 -31.25899 -28.62980 -26.37445 -24.72290 -24.07458 -22.68959 -20.01606 -19.52005 -18.15726 -17.60736 -16.92393 -16.40563 -16.22828 -15.84218 -15.04166 -14.46260 -14.06833 -13.92141 -13.61317 -13.27229 -13.14359 -13.04892 -12.90303 -12.51920 -12.34163 -11.97277 -11.66554 -11.50623 -11.43727 -11.00877 -9.72104 -9.52347 -9.31824 -9.22674 -8.38641 -6.64109 0.18549 0.62729 0.82354 1.10819 1.19615 1.40177 1.52135 1.55610 1.97655 2.18265 2.75127 3.74387 3.82645 4.07873 4.19684 4.30430 4.33008 4.59118 4.61633 4.78437 4.82791 4.92391 5.04463 5.15595 5.28238 5.36194 5.54634 5.70319 5.78887 6.09930 6.49273 6.71479 7.34413 7.91438 8.30208 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.042135 B = 0.005284 C = 0.005232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.364821 B = 5298.125546 C = 5350.137226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.749 5.749 2 C 0.021 3.979 3 Si 0.994 3.006 4 H -0.264 1.264 5 H -0.267 1.267 6 H -0.250 1.250 7 C -0.443 4.443 8 H 0.101 0.899 9 C 0.174 3.826 10 C -0.078 4.078 11 N -0.420 5.420 12 C -0.089 4.089 13 C 0.034 3.966 14 C -0.159 4.159 15 C -0.144 4.144 16 C -0.137 4.137 17 C -0.221 4.221 18 S 0.061 5.939 19 C 0.077 3.923 20 N -0.488 5.488 21 H 0.285 0.715 22 H 0.145 0.855 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.138 0.862 26 H 0.161 0.839 27 H 0.187 0.813 28 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.832 -8.375 -4.453 9.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.202 4.202 3 Si 0.813 3.187 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.173 1.173 7 C -0.475 4.475 8 H 0.119 0.881 9 C 0.049 3.951 10 C -0.247 4.247 11 N -0.133 5.133 12 C -0.229 4.229 13 C -0.006 4.006 14 C -0.276 4.276 15 C -0.174 4.174 16 C -0.168 4.168 17 C -0.356 4.356 18 S 0.323 5.677 19 C -0.091 4.091 20 N -0.206 5.206 21 H 0.095 0.905 22 H 0.162 0.838 23 H 0.111 0.889 24 H 0.107 0.893 25 H 0.155 0.845 26 H 0.178 0.822 27 H 0.204 0.796 28 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.239 -7.396 -5.031 9.221 hybrid contribution 1.420 -0.050 0.595 1.540 sum -0.819 -7.446 -4.436 8.706 Atomic orbital electron populations 1.70167 1.09166 1.29906 1.27800 1.27135 0.95786 1.04967 0.92324 0.85009 0.79210 0.75059 0.79381 1.18839 1.19102 1.17319 1.20102 0.95807 0.90035 1.41508 0.88087 1.19846 0.89737 0.94582 0.90978 1.23335 0.99859 0.89175 1.12348 1.67513 1.08964 1.29734 1.07057 1.21413 0.90775 0.95668 1.15041 1.18623 0.98155 0.90800 0.93070 1.24494 1.02348 1.02717 0.98071 1.20266 0.98208 0.99544 0.99388 1.20407 1.01721 1.02870 0.91786 1.25834 1.01699 1.03603 1.04482 1.84205 1.36364 1.44986 1.02108 1.23766 1.00921 0.89614 0.94825 1.69496 1.08627 1.25882 1.16569 0.90450 0.83763 0.88891 0.89257 0.84469 0.82170 0.79596 0.83219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.32 11.52 21.84 0.25 -39.07 15 2 C 0.02 1.03 5.49 85.30 0.47 1.50 15 3 Si 0.99 36.43 29.56 68.60 2.03 38.45 15 4 H -0.26 -9.42 7.11 99.48 0.71 -8.71 15 5 H -0.27 -9.33 7.11 99.48 0.71 -8.63 15 6 H -0.25 -8.70 7.11 99.48 0.71 -7.99 15 7 C -0.44 -23.29 9.16 23.48 0.22 -23.08 15 8 H 0.10 4.85 7.86 -2.91 -0.02 4.83 15 9 C 0.17 9.60 6.54 40.22 0.26 9.87 15 10 C -0.08 -3.95 10.99 85.33 0.94 -3.01 15 11 N -0.42 -20.22 10.16 -181.05 -1.84 -22.06 15 12 C -0.09 -3.97 6.18 42.63 0.26 -3.71 15 13 C 0.03 1.17 6.12 29.10 0.18 1.35 15 14 C -0.16 -5.32 5.55 24.59 0.14 -5.18 15 15 C -0.14 -4.51 10.05 21.21 0.21 -4.30 15 16 C -0.14 -3.64 10.18 21.22 0.22 -3.42 15 17 C -0.22 -5.66 11.23 66.72 0.75 -4.92 15 18 S 0.06 1.84 23.33 -56.49 -1.32 0.52 15 19 C 0.08 3.69 10.84 84.86 0.92 4.61 15 20 N -0.49 -27.12 8.08 -188.52 -1.52 -28.64 15 21 H 0.28 13.38 8.29 -92.71 -0.77 12.61 15 22 H 0.15 6.70 8.06 -2.91 -0.02 6.68 15 23 H 0.09 2.79 7.88 -2.39 -0.02 2.77 15 24 H 0.09 2.85 8.14 -2.38 -0.02 2.83 15 25 H 0.14 4.18 8.06 -2.91 -0.02 4.16 15 26 H 0.16 3.27 8.06 -2.91 -0.02 3.25 15 27 H 0.19 3.52 8.06 -2.91 -0.02 3.50 15 28 H 0.15 6.21 7.95 -2.91 -0.02 6.18 15 Total: -1.00 -62.94 268.63 3.34 -59.61 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 1.17 Total: 21.48 kcal Atomic # 6 Polarization: -34.85 SS G_CDS: 4.56 Total: -30.29 kcal Atomic # 7 Polarization: -86.66 SS G_CDS: -3.11 Total: -89.77 kcal Atomic # 14 Polarization: 36.43 SS G_CDS: 2.03 Total: 38.45 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -1.32 Total: 0.52 kcal Total: -62.94 3.34 -59.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074115388.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.642 kcal (2) G-P(sol) polarization free energy of solvation -62.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds