Wall clock time and date at job start Mon Mar 30 2020 05:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86799 * 120.00266 * 2 1 4 4 H 1.48495 * 109.47158 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46919 * 300.00079 * 3 2 1 6 6 H 1.48495 * 109.47011 * 60.00032 * 3 2 1 7 7 C 1.39908 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00288 * 179.97438 * 7 2 1 9 9 C 1.41286 * 119.99974 * 359.97438 * 7 2 1 10 10 N 1.31659 * 121.71257 * 0.02562 * 9 7 2 11 11 S 1.56533 * 108.16377 * 179.97438 * 10 9 7 12 12 C 1.71934 * 96.15788 * 359.97438 * 11 10 9 13 13 C 1.50706 * 127.33076 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.46982 * 270.03233 * 13 12 11 15 15 C 1.38234 * 120.00257 * 90.00130 * 14 13 12 16 16 C 1.38238 * 119.99675 * 180.27927 * 15 14 13 17 17 C 1.38228 * 120.00120 * 359.47825 * 16 15 14 18 18 C 1.38234 * 120.00000 * 0.52176 * 17 16 15 19 19 C 1.38234 * 119.99503 * 270.01730 * 14 13 12 20 20 N 1.30552 * 105.34011 * 0.26210 * 12 11 10 21 21 H 0.96998 * 119.99647 * 0.02562 * 1 2 3 22 22 H 1.08988 * 109.47229 * 150.02688 * 13 12 11 23 23 H 1.09000 * 109.46558 * 30.02668 * 13 12 11 24 24 H 1.08002 * 119.99744 * 359.97438 * 15 14 13 25 25 H 1.08004 * 119.99577 * 179.72816 * 16 15 14 26 26 H 1.07999 * 119.99932 * 180.24104 * 17 16 15 27 27 H 1.08001 * 120.00310 * 179.72161 * 18 17 16 28 28 H 1.07997 * 120.00460 * 0.02562 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7024 1.3463 -0.0006 5 1 1.8837 2.3964 -1.2125 6 1 1.8837 2.3963 1.2125 7 6 2.0079 -1.2116 -0.0005 8 1 3.0879 -1.2117 -0.0010 9 6 1.3014 -2.4352 -0.0005 10 7 -0.0146 -2.4745 -0.0005 11 16 -0.4579 -3.9758 -0.0012 12 6 1.1293 -4.6368 -0.0023 13 6 1.5123 -6.0944 -0.0028 14 6 1.6400 -6.5806 1.4179 15 6 0.5408 -7.1079 2.0695 16 6 0.6567 -7.5486 3.3747 17 6 1.8743 -7.4719 4.0245 18 6 2.9735 -6.9447 3.3729 19 6 2.8564 -6.4991 2.0696 20 7 1.9321 -3.6073 0.0037 21 1 -0.4849 0.8401 -0.0004 22 1 2.4652 -6.2195 -0.5167 23 1 0.7437 -6.6717 -0.5166 24 1 -0.4097 -7.1710 1.5606 25 1 -0.2032 -7.9564 3.8852 26 1 1.9657 -7.8198 5.0428 27 1 3.9238 -6.8806 3.8821 28 1 3.7150 -6.0865 1.5607 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074115391.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:19 Heat of formation + Delta-G solvation = 66.559198 kcal Electronic energy + Delta-G solvation = -14497.278621 eV Core-core repulsion = 12025.571658 eV Total energy + Delta-G solvation = -2471.706963 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.17868 -38.46823 -33.92815 -32.84019 -30.69035 -30.18012 -27.58921 -26.80876 -22.59005 -22.37900 -21.00734 -19.07001 -17.41495 -16.96790 -16.54585 -15.05492 -14.83940 -14.80616 -14.17298 -13.68828 -13.22342 -13.06814 -12.74289 -12.20052 -12.04449 -11.33966 -11.24815 -11.15794 -10.97998 -10.80131 -10.40909 -9.92881 -9.34597 -9.21942 -8.90271 -8.71448 -8.51749 -8.31566 -7.54383 -6.53350 -4.55345 1.50808 1.61017 2.24795 2.88138 3.03785 3.12106 3.18302 3.94548 3.96633 4.11300 4.18866 5.02599 5.04618 5.16815 5.23788 5.31695 5.42105 5.59586 5.69583 5.86045 6.00169 6.18443 6.26551 6.64096 6.68245 6.71132 6.87124 7.20377 7.20466 7.59099 8.09912 8.57295 8.73556 9.53731 10.37342 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.032855 B = 0.006104 C = 0.005645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.017012 B = 4585.904994 C = 4958.777441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.065 3.935 3 Si 0.920 3.080 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.407 4.407 8 H 0.091 0.909 9 C 0.340 3.660 10 N -0.547 5.547 11 S 0.180 5.820 12 C 0.000 4.000 13 C 0.011 3.989 14 C -0.070 4.070 15 C -0.111 4.111 16 C -0.123 4.123 17 C -0.128 4.128 18 C -0.123 4.123 19 C -0.102 4.102 20 N -0.497 5.497 21 H 0.274 0.726 22 H 0.089 0.911 23 H 0.088 0.912 24 H 0.123 0.877 25 H 0.119 0.881 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.834 -11.749 3.739 12.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.158 4.158 3 Si 0.744 3.256 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.453 4.453 8 H 0.109 0.891 9 C 0.080 3.920 10 N -0.385 5.385 11 S 0.316 5.684 12 C -0.292 4.292 13 C -0.030 4.030 14 C -0.071 4.071 15 C -0.129 4.129 16 C -0.141 4.141 17 C -0.146 4.146 18 C -0.141 4.141 19 C -0.121 4.121 20 N -0.220 5.220 21 H 0.085 0.915 22 H 0.108 0.892 23 H 0.106 0.894 24 H 0.141 0.859 25 H 0.137 0.863 26 H 0.135 0.865 27 H 0.137 0.863 28 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.550 -11.199 3.727 11.816 hybrid contribution 1.353 1.072 0.087 1.728 sum 1.903 -10.127 3.813 10.987 Atomic orbital electron populations 1.69990 1.07090 1.27873 1.32105 1.25889 0.94958 1.01053 0.93872 0.86065 0.80577 0.80573 0.78375 1.18374 1.19935 1.19946 1.18762 0.94121 0.86665 1.45744 0.89139 1.20228 0.84863 0.91674 0.95233 1.74829 1.15184 1.07703 1.40805 1.80975 1.17174 1.01436 1.68799 1.28769 0.98591 0.98481 1.03346 1.18893 1.03072 0.87712 0.93319 1.19747 0.93779 0.97719 0.95899 1.21079 0.98141 0.98656 0.94993 1.21076 0.97471 1.00642 0.94911 1.21088 0.93291 1.00580 0.99627 1.21109 0.98689 0.99347 0.94962 1.21110 0.97627 0.98458 0.94861 1.68691 1.35445 0.98199 1.19667 0.91525 0.89234 0.89367 0.85862 0.86275 0.86523 0.86331 0.85823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.05 11.62 55.54 0.65 -20.41 15 2 C 0.07 1.76 5.49 -17.35 -0.10 1.66 15 3 Si 0.92 19.69 29.56 -169.99 -5.02 14.67 15 4 H -0.26 -5.43 7.11 56.52 0.40 -5.03 15 5 H -0.27 -5.73 7.11 56.52 0.40 -5.33 15 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 7 C -0.41 -11.65 9.43 -37.80 -0.36 -12.00 15 8 H 0.09 2.47 7.85 -52.48 -0.41 2.06 15 9 C 0.34 9.85 7.21 -160.29 -1.16 8.70 15 10 N -0.55 -15.84 9.19 20.47 0.19 -15.65 15 11 S 0.18 4.21 23.29 -107.50 -2.50 1.71 15 12 C 0.00 -0.01 6.98 -12.82 -0.09 -0.10 15 13 C 0.01 0.17 5.97 -29.03 -0.17 0.00 15 14 C -0.07 -1.09 5.12 -104.62 -0.54 -1.63 15 15 C -0.11 -1.57 9.70 -39.58 -0.38 -1.95 15 16 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 15 17 C -0.13 -1.61 10.05 -39.59 -0.40 -2.01 15 18 C -0.12 -1.66 10.05 -39.58 -0.40 -2.06 15 19 C -0.10 -1.57 9.70 -39.58 -0.38 -1.95 15 20 N -0.50 -12.96 10.83 -22.20 -0.24 -13.20 15 21 H 0.27 7.01 8.30 -40.82 -0.34 6.68 15 22 H 0.09 1.36 8.08 -51.94 -0.42 0.94 15 23 H 0.09 1.19 8.09 -51.93 -0.42 0.77 15 24 H 0.12 1.56 8.06 -52.49 -0.42 1.13 15 25 H 0.12 1.23 8.06 -52.48 -0.42 0.80 15 26 H 0.12 1.16 8.06 -52.49 -0.42 0.74 15 27 H 0.12 1.33 8.06 -52.49 -0.42 0.90 15 28 H 0.12 1.85 8.06 -52.49 -0.42 1.43 15 LS Contribution 268.16 15.07 4.04 4.04 Total: -1.00 -32.65 268.16 -9.76 -42.41 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -2.50 Total: -0.25 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -4.37 Total: -13.32 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: 0.59 Total: -49.26 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -2.50 Total: 1.71 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.65 -9.76 -42.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074115391.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.968 kcal (2) G-P(sol) polarization free energy of solvation -32.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds