Wall clock time and date at job start Mon Mar 30 2020 05:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86799 * 120.00266 * 2 1 4 4 H 1.48495 * 109.47158 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46919 * 300.00079 * 3 2 1 6 6 H 1.48495 * 109.47011 * 60.00032 * 3 2 1 7 7 C 1.39908 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00288 * 179.97438 * 7 2 1 9 9 C 1.41286 * 119.99974 * 359.97438 * 7 2 1 10 10 N 1.31659 * 121.71257 * 0.02562 * 9 7 2 11 11 S 1.56533 * 108.16377 * 179.97438 * 10 9 7 12 12 C 1.71934 * 96.15788 * 359.97438 * 11 10 9 13 13 C 1.50706 * 127.33076 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.46982 * 270.03233 * 13 12 11 15 15 C 1.38234 * 120.00257 * 90.00130 * 14 13 12 16 16 C 1.38238 * 119.99675 * 180.27927 * 15 14 13 17 17 C 1.38228 * 120.00120 * 359.47825 * 16 15 14 18 18 C 1.38234 * 120.00000 * 0.52176 * 17 16 15 19 19 C 1.38234 * 119.99503 * 270.01730 * 14 13 12 20 20 N 1.30552 * 105.34011 * 0.26210 * 12 11 10 21 21 H 0.96998 * 119.99647 * 0.02562 * 1 2 3 22 22 H 1.08988 * 109.47229 * 150.02688 * 13 12 11 23 23 H 1.09000 * 109.46558 * 30.02668 * 13 12 11 24 24 H 1.08002 * 119.99744 * 359.97438 * 15 14 13 25 25 H 1.08004 * 119.99577 * 179.72816 * 16 15 14 26 26 H 1.07999 * 119.99932 * 180.24104 * 17 16 15 27 27 H 1.08001 * 120.00310 * 179.72161 * 18 17 16 28 28 H 1.07997 * 120.00460 * 0.02562 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7024 1.3463 -0.0006 5 1 1.8837 2.3964 -1.2125 6 1 1.8837 2.3963 1.2125 7 6 2.0079 -1.2116 -0.0005 8 1 3.0879 -1.2117 -0.0010 9 6 1.3014 -2.4352 -0.0005 10 7 -0.0146 -2.4745 -0.0005 11 16 -0.4579 -3.9758 -0.0012 12 6 1.1293 -4.6368 -0.0023 13 6 1.5123 -6.0944 -0.0028 14 6 1.6400 -6.5806 1.4179 15 6 0.5408 -7.1079 2.0695 16 6 0.6567 -7.5486 3.3747 17 6 1.8743 -7.4719 4.0245 18 6 2.9735 -6.9447 3.3729 19 6 2.8564 -6.4991 2.0696 20 7 1.9321 -3.6073 0.0037 21 1 -0.4849 0.8401 -0.0004 22 1 2.4652 -6.2195 -0.5167 23 1 0.7437 -6.6717 -0.5166 24 1 -0.4097 -7.1710 1.5606 25 1 -0.2032 -7.9564 3.8852 26 1 1.9657 -7.8198 5.0428 27 1 3.9238 -6.8806 3.8821 28 1 3.7150 -6.0865 1.5607 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074115391.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:19 Heat of formation + Delta-G solvation = 46.540054 kcal Electronic energy + Delta-G solvation = -14498.146716 eV Core-core repulsion = 12025.571658 eV Total energy + Delta-G solvation = -2472.575058 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.74729 -39.94746 -35.70158 -34.45237 -31.93677 -31.72769 -29.48604 -28.39242 -24.29733 -23.43985 -22.35754 -20.85257 -19.36528 -18.95621 -17.62727 -16.73017 -16.22079 -15.94685 -15.84588 -15.39101 -14.79028 -14.23860 -14.00915 -13.43714 -13.38272 -13.25241 -12.98062 -12.93759 -12.25252 -12.09219 -11.87212 -11.81599 -11.25507 -11.07320 -10.86929 -10.32053 -9.77050 -9.67150 -9.46523 -8.52790 -6.66203 0.24986 0.55000 0.55471 1.04121 1.35679 1.37046 1.55187 2.06077 2.19090 2.21991 2.88665 3.30613 3.59226 3.91400 4.01306 4.20995 4.33809 4.41822 4.62396 4.71973 4.82936 4.92951 5.14723 5.18766 5.21576 5.55684 5.60496 5.65211 5.74929 5.99364 6.16576 6.55013 6.66399 7.52002 8.40395 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.032855 B = 0.006104 C = 0.005645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.017012 B = 4585.904994 C = 4958.777441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.020 3.980 3 Si 1.004 2.996 4 H -0.253 1.253 5 H -0.263 1.263 6 H -0.264 1.264 7 C -0.446 4.446 8 H 0.089 0.911 9 C 0.317 3.683 10 N -0.602 5.602 11 S 0.210 5.790 12 C 0.025 3.975 13 C 0.012 3.988 14 C -0.092 4.092 15 C -0.120 4.120 16 C -0.126 4.126 17 C -0.126 4.126 18 C -0.131 4.131 19 C -0.124 4.124 20 N -0.531 5.531 21 H 0.281 0.719 22 H 0.099 0.901 23 H 0.120 0.880 24 H 0.137 0.863 25 H 0.147 0.853 26 H 0.147 0.853 27 H 0.138 0.862 28 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.062 -12.610 4.667 13.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.199 4.199 3 Si 0.823 3.177 4 H -0.177 1.177 5 H -0.188 1.188 6 H -0.189 1.189 7 C -0.491 4.491 8 H 0.107 0.893 9 C 0.056 3.944 10 N -0.441 5.441 11 S 0.347 5.653 12 C -0.265 4.265 13 C -0.028 4.028 14 C -0.094 4.094 15 C -0.138 4.138 16 C -0.144 4.144 17 C -0.144 4.144 18 C -0.149 4.149 19 C -0.142 4.142 20 N -0.254 5.254 21 H 0.092 0.908 22 H 0.118 0.882 23 H 0.139 0.861 24 H 0.155 0.845 25 H 0.165 0.835 26 H 0.164 0.836 27 H 0.156 0.844 28 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.761 -12.093 4.651 12.979 hybrid contribution 1.240 1.126 -0.144 1.681 sum 2.002 -10.967 4.507 12.024 Atomic orbital electron populations 1.70102 1.08965 1.29385 1.32621 1.26955 0.95825 1.04714 0.92418 0.84845 0.79063 0.74912 0.78918 1.17668 1.18786 1.18896 1.19154 0.94402 0.87997 1.47596 0.89296 1.20643 0.85374 0.92926 0.95449 1.74592 1.15694 1.11874 1.41968 1.80481 1.16946 0.99151 1.68713 1.29621 0.97312 1.00248 0.99367 1.19157 1.04661 0.84099 0.94883 1.19740 0.94670 0.99462 0.95533 1.21345 0.98198 0.98475 0.95816 1.21476 0.98647 0.99836 0.94467 1.21508 0.92750 0.99261 1.00884 1.21415 1.00159 0.98956 0.94394 1.21254 0.97560 0.99394 0.95983 1.68745 1.36076 0.98385 1.22234 0.90826 0.88223 0.86144 0.84514 0.83485 0.83552 0.84389 0.86570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -45.31 11.62 21.82 0.25 -45.05 15 2 C 0.02 1.10 5.49 85.25 0.47 1.57 15 3 Si 1.00 40.65 29.56 68.60 2.03 42.68 15 4 H -0.25 -9.85 7.11 99.48 0.71 -9.15 15 5 H -0.26 -10.12 7.11 99.48 0.71 -9.42 15 6 H -0.26 -10.20 7.11 99.48 0.71 -9.49 15 7 C -0.45 -26.30 9.43 23.42 0.22 -26.08 15 8 H 0.09 5.03 7.85 -2.91 -0.02 5.01 15 9 C 0.32 18.91 7.21 135.73 0.98 19.89 15 10 N -0.60 -35.78 9.19 -89.16 -0.82 -36.60 15 11 S 0.21 9.81 23.29 -56.49 -1.32 8.50 15 12 C 0.03 1.11 6.98 88.30 0.62 1.73 15 13 C 0.01 0.39 5.97 29.10 0.17 0.56 15 14 C -0.09 -2.77 5.12 -19.87 -0.10 -2.87 15 15 C -0.12 -3.15 9.70 22.27 0.22 -2.93 15 16 C -0.13 -2.87 10.05 22.27 0.22 -2.64 15 17 C -0.13 -2.80 10.05 22.27 0.22 -2.57 15 18 C -0.13 -3.30 10.05 22.27 0.22 -3.07 15 19 C -0.12 -3.68 9.70 22.27 0.22 -3.47 15 20 N -0.53 -28.23 10.83 -224.16 -2.43 -30.65 15 21 H 0.28 14.63 8.30 -92.71 -0.77 13.86 15 22 H 0.10 2.93 8.08 -2.39 -0.02 2.91 15 23 H 0.12 2.95 8.09 -2.39 -0.02 2.93 15 24 H 0.14 3.10 8.06 -2.91 -0.02 3.07 15 25 H 0.15 2.46 8.06 -2.91 -0.02 2.43 15 26 H 0.15 2.33 8.06 -2.91 -0.02 2.31 15 27 H 0.14 2.80 8.06 -2.91 -0.02 2.78 15 28 H 0.12 3.51 8.06 -2.91 -0.02 3.48 15 Total: -1.00 -72.65 268.16 2.35 -70.29 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 1.17 Total: 10.73 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: 3.46 Total: -19.90 kcal Atomic # 7 Polarization: -109.31 SS G_CDS: -2.99 Total: -112.30 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Atomic # 16 Polarization: 9.81 SS G_CDS: -1.32 Total: 8.50 kcal Total: -72.65 2.35 -70.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074115391.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.834 kcal (2) G-P(sol) polarization free energy of solvation -72.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds