Wall clock time and date at job start Mon Mar 30 2020 05:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31079 * 1 3 3 Si 1.86805 * 120.00288 * 2 1 4 4 H 1.48504 * 109.47088 * 274.97802 * 3 2 1 5 5 H 1.48502 * 109.47161 * 34.97347 * 3 2 1 6 6 H 1.48500 * 109.47528 * 154.97628 * 3 2 1 7 7 C 1.39617 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00337 * 173.66286 * 7 2 1 9 9 C 1.41040 * 119.99358 * 353.65644 * 7 2 1 10 10 C 1.37758 * 122.83441 * 186.16301 * 9 7 2 11 11 S 1.70965 * 108.98023 * 179.76930 * 10 9 7 12 12 C 1.75877 * 90.87596 * 0.29275 * 11 10 9 13 13 N 1.38080 * 125.01844 * 179.97438 * 12 11 10 14 14 C 1.39743 * 120.00270 * 5.60597 * 13 12 11 15 15 C 1.38930 * 120.07186 * 35.12915 * 14 13 12 16 16 C 1.38095 * 119.92399 * 180.02562 * 15 14 13 17 17 C 1.38294 * 120.07636 * 0.02754 * 16 15 14 18 18 C 1.38301 * 120.14745 * 0.23084 * 17 16 15 19 19 C 1.38094 * 120.07745 * 359.48442 * 18 17 16 20 20 N 1.29642 * 109.96245 * 359.70008 * 12 11 10 21 21 H 0.97004 * 120.00053 * 0.02562 * 1 2 3 22 22 H 1.08005 * 125.50988 * 0.02562 * 10 9 7 23 23 H 0.96998 * 120.00218 * 185.60218 * 13 12 11 24 24 H 1.07997 * 120.03813 * 0.05072 * 15 14 13 25 25 H 1.08002 * 119.96796 * 180.02562 * 16 15 14 26 26 H 1.08001 * 119.92826 * 179.97438 * 17 16 15 27 27 H 1.08003 * 119.95700 * 179.74765 * 18 17 16 28 28 H 1.08004 * 120.03936 * 180.25335 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2449 1.6177 0.0000 4 1 2.3872 2.1072 -1.3948 5 1 1.4989 2.6201 0.8025 6 1 3.5911 1.4121 0.5922 7 6 2.0089 -1.2091 0.0005 8 1 3.0839 -1.2120 -0.1027 9 6 1.3101 -2.4267 0.1361 10 6 1.9455 -3.6419 0.2680 11 16 0.7675 -4.8724 0.4127 12 6 -0.5255 -3.6877 0.2791 13 7 -1.8746 -3.9797 0.3154 14 6 -2.3004 -5.2831 0.5851 15 6 -1.5892 -6.0775 1.4757 16 6 -2.0125 -7.3653 1.7396 17 6 -3.1425 -7.8644 1.1181 18 6 -3.8498 -7.0781 0.2270 19 6 -3.4355 -5.7875 -0.0371 20 7 -0.0249 -2.4991 0.1472 21 1 -0.4850 0.8401 -0.0004 22 1 3.0149 -3.7923 0.2823 23 1 -2.5268 -3.2802 0.1537 24 1 -0.7066 -5.6883 1.9614 25 1 -1.4604 -7.9833 2.4322 26 1 -3.4712 -8.8720 1.3260 27 1 -4.7296 -7.4725 -0.2598 28 1 -3.9906 -5.1726 -0.7300 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074115395.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:47 Heat of formation + Delta-G solvation = 70.966273 kcal Electronic energy + Delta-G solvation = -14557.007363 eV Core-core repulsion = 12085.491505 eV Total energy + Delta-G solvation = -2471.515858 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.32545 -37.72091 -35.11926 -32.96242 -30.77761 -29.62617 -27.87793 -25.52687 -23.23850 -22.32522 -21.20907 -19.29519 -18.19425 -16.68467 -16.00476 -15.73013 -15.10934 -14.67629 -14.33970 -13.80395 -13.45461 -13.13814 -13.05526 -12.49222 -11.70908 -11.50752 -11.36726 -11.27314 -11.01716 -10.69820 -10.41310 -10.28821 -9.63285 -9.17992 -8.74258 -8.28443 -8.07644 -7.69913 -6.61756 -6.52609 -4.33738 1.51227 1.57164 2.49142 2.57254 3.07154 3.10705 3.16087 3.56296 3.86092 4.00499 4.07121 4.36290 5.08028 5.11610 5.34153 5.53182 5.59602 5.72606 5.89549 6.15472 6.39383 6.58266 6.64883 6.73290 7.00606 7.18645 7.23102 7.47302 7.69743 7.93837 8.26665 8.60104 8.91673 9.64483 10.35168 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.048995 B = 0.005788 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.350502 B = 4836.343861 C = 5280.513522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.072 3.928 3 Si 0.911 3.089 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.432 4.432 8 H 0.085 0.915 9 C 0.257 3.743 10 C -0.496 4.496 11 S -0.004 6.004 12 C 0.288 3.712 13 N -0.641 5.641 14 C 0.188 3.812 15 C -0.162 4.162 16 C -0.085 4.085 17 C -0.160 4.160 18 C -0.092 4.092 19 C -0.163 4.163 20 N -0.450 5.450 21 H 0.272 0.728 22 H 0.137 0.863 23 H 0.415 0.585 24 H 0.138 0.862 25 H 0.122 0.878 26 H 0.117 0.883 27 H 0.121 0.879 28 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.758 -9.183 1.550 11.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.150 4.150 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.467 4.467 8 H 0.103 0.897 9 C 0.135 3.865 10 C -0.635 4.635 11 S 0.238 5.762 12 C -0.085 4.085 13 N -0.272 5.272 14 C 0.089 3.911 15 C -0.185 4.185 16 C -0.104 4.104 17 C -0.179 4.179 18 C -0.111 4.111 19 C -0.185 4.185 20 N -0.172 5.172 21 H 0.082 0.918 22 H 0.155 0.845 23 H 0.253 0.747 24 H 0.155 0.845 25 H 0.140 0.860 26 H 0.136 0.864 27 H 0.138 0.862 28 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.115 -9.582 1.613 12.043 hybrid contribution 0.671 1.970 -0.222 2.093 sum -6.444 -7.612 1.391 10.070 Atomic orbital electron populations 1.70148 1.07018 1.27790 1.32573 1.25990 0.94947 1.01079 0.92970 0.86264 0.80510 0.80800 0.78909 1.19600 1.20209 1.18531 1.18923 0.94531 0.88470 1.44742 0.89669 1.17626 0.84273 0.93034 0.91606 1.25053 1.01004 0.94494 1.42950 1.82720 0.99550 1.14617 1.79278 1.24636 0.88677 0.92383 1.02815 1.40953 1.02868 1.08065 1.75293 1.17757 0.94858 0.84544 0.93929 1.21318 1.02680 0.95548 0.98942 1.20925 0.95961 0.94648 0.98832 1.20998 0.96992 1.00029 0.99899 1.20861 0.99243 0.93343 0.97608 1.20841 0.99214 0.96536 1.01880 1.67573 1.13099 1.16619 1.19873 0.91751 0.84482 0.74697 0.84451 0.85971 0.86447 0.86150 0.85931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -20.50 11.71 55.53 0.65 -19.85 15 2 C 0.07 1.91 5.48 -17.36 -0.10 1.81 15 3 Si 0.91 19.34 29.56 -169.99 -5.03 14.31 15 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 15 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 15 6 H -0.26 -5.47 7.11 56.52 0.40 -5.06 15 7 C -0.43 -12.13 9.22 -38.01 -0.35 -12.48 15 8 H 0.09 2.27 7.85 -52.49 -0.41 1.86 15 9 C 0.26 7.31 6.46 -86.16 -0.56 6.75 15 10 C -0.50 -13.01 10.97 30.56 0.34 -12.67 15 11 S 0.00 -0.08 19.28 -107.50 -2.07 -2.16 15 12 C 0.29 6.85 8.08 -88.23 -0.71 6.13 15 13 N -0.64 -12.49 5.46 -10.61 -0.06 -12.55 15 14 C 0.19 3.17 6.25 -83.74 -0.52 2.65 15 15 C -0.16 -2.65 8.17 -39.38 -0.32 -2.97 15 16 C -0.08 -1.13 10.04 -39.61 -0.40 -1.53 15 17 C -0.16 -1.89 10.04 -39.54 -0.40 -2.29 15 18 C -0.09 -1.10 10.04 -39.61 -0.40 -1.50 15 19 C -0.16 -2.27 9.97 -39.38 -0.39 -2.67 15 20 N -0.45 -12.41 8.53 -11.73 -0.10 -12.51 15 21 H 0.27 6.74 8.30 -40.82 -0.34 6.40 15 22 H 0.14 3.44 8.06 -52.48 -0.42 3.02 15 23 H 0.41 7.53 8.94 -40.82 -0.36 7.16 15 24 H 0.14 2.46 5.75 -45.03 -0.26 2.20 15 25 H 0.12 1.34 8.06 -52.49 -0.42 0.91 15 26 H 0.12 1.07 8.06 -52.49 -0.42 0.65 15 27 H 0.12 1.10 8.06 -52.48 -0.42 0.68 15 28 H 0.12 1.51 8.06 -52.48 -0.42 1.09 15 LS Contribution 261.72 15.07 3.94 3.94 Total: -1.00 -30.48 261.72 -8.76 -39.24 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -2.28 Total: 8.32 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -3.81 Total: -18.75 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.49 Total: -44.91 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.31 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -2.07 Total: -2.16 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.48 -8.76 -39.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074115395.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.206 kcal (2) G-P(sol) polarization free energy of solvation -30.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds