Wall clock time and date at job start Mon Mar 30 2020 05:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31079 * 1 3 3 Si 1.86805 * 120.00288 * 2 1 4 4 H 1.48504 * 109.47088 * 274.97802 * 3 2 1 5 5 H 1.48502 * 109.47161 * 34.97347 * 3 2 1 6 6 H 1.48500 * 109.47528 * 154.97628 * 3 2 1 7 7 C 1.39617 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00337 * 173.66286 * 7 2 1 9 9 C 1.41040 * 119.99358 * 353.65644 * 7 2 1 10 10 C 1.37758 * 122.83441 * 186.16301 * 9 7 2 11 11 S 1.70965 * 108.98023 * 179.76930 * 10 9 7 12 12 C 1.75877 * 90.87596 * 0.29275 * 11 10 9 13 13 N 1.38080 * 125.01844 * 179.97438 * 12 11 10 14 14 C 1.39743 * 120.00270 * 5.60597 * 13 12 11 15 15 C 1.38930 * 120.07186 * 35.12915 * 14 13 12 16 16 C 1.38095 * 119.92399 * 180.02562 * 15 14 13 17 17 C 1.38294 * 120.07636 * 0.02754 * 16 15 14 18 18 C 1.38301 * 120.14745 * 0.23084 * 17 16 15 19 19 C 1.38094 * 120.07745 * 359.48442 * 18 17 16 20 20 N 1.29642 * 109.96245 * 359.70008 * 12 11 10 21 21 H 0.97004 * 120.00053 * 0.02562 * 1 2 3 22 22 H 1.08005 * 125.50988 * 0.02562 * 10 9 7 23 23 H 0.96998 * 120.00218 * 185.60218 * 13 12 11 24 24 H 1.07997 * 120.03813 * 0.05072 * 15 14 13 25 25 H 1.08002 * 119.96796 * 180.02562 * 16 15 14 26 26 H 1.08001 * 119.92826 * 179.97438 * 17 16 15 27 27 H 1.08003 * 119.95700 * 179.74765 * 18 17 16 28 28 H 1.08004 * 120.03936 * 180.25335 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2449 1.6177 0.0000 4 1 2.3872 2.1072 -1.3948 5 1 1.4989 2.6201 0.8025 6 1 3.5911 1.4121 0.5922 7 6 2.0089 -1.2091 0.0005 8 1 3.0839 -1.2120 -0.1027 9 6 1.3101 -2.4267 0.1361 10 6 1.9455 -3.6419 0.2680 11 16 0.7675 -4.8724 0.4127 12 6 -0.5255 -3.6877 0.2791 13 7 -1.8746 -3.9797 0.3154 14 6 -2.3004 -5.2831 0.5851 15 6 -1.5892 -6.0775 1.4757 16 6 -2.0125 -7.3653 1.7396 17 6 -3.1425 -7.8644 1.1181 18 6 -3.8498 -7.0781 0.2270 19 6 -3.4355 -5.7875 -0.0371 20 7 -0.0249 -2.4991 0.1472 21 1 -0.4850 0.8401 -0.0004 22 1 3.0149 -3.7923 0.2823 23 1 -2.5268 -3.2802 0.1537 24 1 -0.7066 -5.6883 1.9614 25 1 -1.4604 -7.9833 2.4322 26 1 -3.4712 -8.8720 1.3260 27 1 -4.7296 -7.4725 -0.2598 28 1 -3.9906 -5.1726 -0.7300 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074115395.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:47 Heat of formation + Delta-G solvation = 52.783672 kcal Electronic energy + Delta-G solvation = -14557.795820 eV Core-core repulsion = 12085.491505 eV Total energy + Delta-G solvation = -2472.304315 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.60308 -39.51044 -36.60910 -34.88280 -31.87715 -31.21104 -29.46078 -27.53051 -24.77196 -23.54794 -22.64043 -21.10772 -19.86075 -18.24978 -17.62455 -17.00049 -16.94160 -16.27359 -15.84012 -15.04548 -14.95392 -14.78845 -14.32243 -13.82311 -13.50591 -13.38497 -12.97697 -12.63465 -12.48221 -12.22922 -12.12997 -11.73952 -11.47717 -10.99426 -10.01092 -9.89911 -9.81287 -9.44450 -8.47028 -8.32739 -6.39374 0.20843 0.48773 0.67432 0.84106 1.36740 1.41423 1.52640 1.79248 2.20010 2.28150 2.39197 2.94361 3.47916 4.01783 4.11114 4.37500 4.42520 4.60583 4.70009 4.82198 5.15340 5.16753 5.25170 5.41070 5.52413 5.57117 5.67977 5.88475 6.09831 6.23077 6.50859 6.59234 6.90160 7.71581 8.42671 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.048995 B = 0.005788 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.350502 B = 4836.343861 C = 5280.513522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.027 3.973 3 Si 0.992 3.008 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.258 1.258 7 C -0.473 4.473 8 H 0.084 0.916 9 C 0.229 3.771 10 C -0.535 4.535 11 S 0.059 5.941 12 C 0.291 3.709 13 N -0.636 5.636 14 C 0.150 3.850 15 C -0.184 4.184 16 C -0.088 4.088 17 C -0.144 4.144 18 C -0.086 4.086 19 C -0.160 4.160 20 N -0.499 5.499 21 H 0.279 0.721 22 H 0.136 0.864 23 H 0.417 0.583 24 H 0.114 0.886 25 H 0.146 0.854 26 H 0.156 0.844 27 H 0.158 0.842 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.336 -10.761 1.572 13.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.192 4.192 3 Si 0.812 3.188 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.181 1.181 7 C -0.507 4.507 8 H 0.102 0.898 9 C 0.106 3.894 10 C -0.673 4.673 11 S 0.302 5.698 12 C -0.083 4.083 13 N -0.268 5.268 14 C 0.053 3.947 15 C -0.207 4.207 16 C -0.106 4.106 17 C -0.163 4.163 18 C -0.105 4.105 19 C -0.182 4.182 20 N -0.223 5.223 21 H 0.090 0.910 22 H 0.154 0.846 23 H 0.256 0.744 24 H 0.132 0.868 25 H 0.163 0.837 26 H 0.173 0.827 27 H 0.176 0.824 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.732 -11.239 1.643 14.327 hybrid contribution 0.969 2.174 -0.196 2.389 sum -7.763 -9.064 1.447 12.022 Atomic orbital electron populations 1.70242 1.08628 1.29195 1.32696 1.26947 0.95869 1.04569 0.91855 0.85053 0.78909 0.75460 0.79362 1.18565 1.19054 1.18146 1.19282 0.94835 0.89853 1.46712 0.89794 1.18037 0.85342 0.94012 0.91989 1.25339 1.02126 0.96009 1.43849 1.82261 0.96984 1.11882 1.78651 1.25036 0.90601 0.92253 1.00402 1.41055 1.01120 1.09580 1.75027 1.18097 0.96852 0.83645 0.96088 1.21296 1.02475 0.97132 0.99778 1.21244 0.96736 0.93481 0.99142 1.21495 0.95409 1.01446 0.97959 1.21344 1.00005 0.92137 0.96977 1.21112 0.97919 0.97707 1.01452 1.67569 1.12888 1.18582 1.23259 0.91049 0.84630 0.74411 0.86794 0.83659 0.82664 0.82416 0.84570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -44.02 11.71 21.78 0.26 -43.77 15 2 C 0.03 1.44 5.48 85.14 0.47 1.90 15 3 Si 0.99 40.36 29.56 68.60 2.03 42.39 15 4 H -0.26 -10.13 7.11 99.48 0.71 -9.42 15 5 H -0.27 -10.24 7.11 99.48 0.71 -9.54 15 6 H -0.26 -10.20 7.11 99.48 0.71 -9.49 15 7 C -0.47 -27.73 9.22 23.29 0.21 -27.52 15 8 H 0.08 4.70 7.85 -2.91 -0.02 4.68 15 9 C 0.23 13.67 6.46 39.43 0.25 13.93 15 10 C -0.53 -29.24 10.97 67.71 0.74 -28.50 15 11 S 0.06 2.72 19.28 -56.49 -1.09 1.63 15 12 C 0.29 14.24 8.08 179.51 1.45 15.69 15 13 N -0.64 -25.20 5.46 -187.49 -1.02 -26.22 15 14 C 0.15 4.92 6.25 38.21 0.24 5.16 15 15 C -0.18 -5.84 8.17 22.40 0.18 -5.66 15 16 C -0.09 -2.07 10.04 22.25 0.22 -1.84 15 17 C -0.14 -2.72 10.04 22.30 0.22 -2.49 15 18 C -0.09 -1.67 10.04 22.25 0.22 -1.45 15 19 C -0.16 -4.08 9.97 22.40 0.22 -3.85 15 20 N -0.50 -28.74 8.53 -191.01 -1.63 -30.37 15 21 H 0.28 14.13 8.30 -92.71 -0.77 13.36 15 22 H 0.14 7.16 8.06 -2.91 -0.02 7.14 15 23 H 0.42 15.55 8.94 -92.71 -0.83 14.72 15 24 H 0.11 4.12 5.75 -7.66 -0.04 4.07 15 25 H 0.15 2.69 8.06 -2.91 -0.02 2.67 15 26 H 0.16 1.84 8.06 -2.91 -0.02 1.81 15 27 H 0.16 1.94 8.06 -2.91 -0.02 1.92 15 28 H 0.14 3.03 8.06 -2.91 -0.02 3.00 15 Total: -1.00 -69.39 261.72 3.32 -66.06 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 0.34 Total: 24.92 kcal Atomic # 6 Polarization: -39.08 SS G_CDS: 4.44 Total: -34.64 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -2.40 Total: -100.36 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -1.09 Total: 1.63 kcal Total: -69.39 3.32 -66.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074115395.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.848 kcal (2) G-P(sol) polarization free energy of solvation -69.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds