Wall clock time and date at job start Mon Mar 30 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.70997 * 125.56457 * 2 1 4 4 C 1.75916 * 90.76418 * 179.97438 * 3 2 1 5 5 C 1.47805 * 125.06102 * 180.02562 * 4 3 2 6 6 C 1.39555 * 119.74884 * 359.69599 * 5 4 3 7 7 C 1.38383 * 119.05372 * 179.75506 * 6 5 4 8 8 C 1.38798 * 118.51885 * 0.51234 * 7 6 5 9 9 C 1.38359 * 119.40344 * 359.72884 * 8 7 6 10 10 N 1.31668 * 120.91687 * 0.02562 * 9 8 7 11 11 N 1.29822 * 109.87506 * 359.97438 * 4 3 2 12 12 C 1.32673 * 116.03162 * 0.02562 * 11 4 3 13 13 C 1.41178 * 122.77253 * 180.26616 * 12 11 4 14 14 H 1.08005 * 120.00242 * 179.71162 * 13 12 11 15 15 C 1.39677 * 120.00177 * 359.71342 * 13 12 11 16 16 N 1.31035 * 119.99932 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00147 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47191 * 59.99796 * 17 15 13 19 19 H 1.48507 * 109.46874 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47186 * 299.99624 * 17 15 13 21 21 H 1.08994 * 109.47253 * 270.04607 * 1 2 3 22 22 H 1.09006 * 109.46885 * 30.04209 * 1 2 3 23 23 H 1.09002 * 109.47032 * 150.03877 * 1 2 3 24 24 H 1.07997 * 120.47364 * 359.97438 * 6 5 4 25 25 H 1.07996 * 120.74069 * 180.23565 * 7 6 5 26 26 H 1.07998 * 120.29833 * 179.70479 * 8 7 6 27 27 H 1.07992 * 119.54541 * 180.02562 * 9 8 7 28 28 H 0.97000 * 120.00221 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5016 1.3910 0.0000 4 6 3.9461 0.3870 0.0008 5 6 5.3338 0.8959 0.0017 6 6 5.5668 2.2718 -0.0044 7 6 6.8716 2.7325 0.0017 8 6 7.9025 1.8031 0.0028 9 6 7.5999 0.4530 0.0036 10 7 6.3497 0.0399 0.0027 11 7 3.6117 -0.8674 0.0015 12 6 2.3098 -1.1230 0.0010 13 6 1.7886 -2.4350 0.0072 14 1 0.7200 -2.5916 0.0112 15 6 2.6549 -3.5307 0.0082 16 7 3.9514 -3.3408 0.0029 17 14 1.9652 -5.2667 0.0157 18 1 1.1284 -5.4721 -1.1937 19 1 3.0837 -6.2436 0.0150 20 1 1.1354 -5.4644 1.2312 21 1 -0.3633 0.0008 1.0276 22 1 -0.3633 0.8897 -0.5145 23 1 -0.3633 -0.8904 -0.5132 24 1 4.7405 2.9672 -0.0103 25 1 7.0832 3.7915 0.0010 26 1 8.9316 2.1308 0.0028 27 1 8.4002 -0.2721 0.0049 28 1 4.5530 -4.1017 0.0032 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074115427.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:12 Heat of formation + Delta-G solvation = 71.238444 kcal Electronic energy + Delta-G solvation = -14671.870401 eV Core-core repulsion = 12200.366346 eV Total energy + Delta-G solvation = -2471.504056 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.63621 -37.77326 -33.32439 -32.17856 -31.84506 -30.34290 -27.35287 -24.84816 -23.46137 -22.86115 -21.28054 -19.02029 -17.05139 -16.55267 -15.53975 -15.39762 -15.17965 -14.72101 -13.86372 -13.63037 -12.98443 -12.90889 -12.67955 -11.90474 -11.71666 -11.65709 -11.47827 -11.22556 -11.17027 -10.55527 -10.42397 -9.63122 -9.51194 -9.38372 -8.92252 -8.83578 -8.02768 -7.82279 -7.15976 -6.47294 -4.32390 1.07006 1.62035 2.45079 2.68830 3.10324 3.12065 3.14192 3.51850 4.02132 4.11269 4.53468 4.74873 4.96661 5.08688 5.33951 5.44239 5.51481 5.79952 6.02223 6.21097 6.36353 6.40370 6.54546 6.62127 6.79909 7.03661 7.06419 7.26323 7.54378 8.17691 8.46542 8.54703 8.88848 9.59757 10.37545 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.023840 B = 0.008208 C = 0.006126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.210677 B = 3410.657889 C = 4569.719628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 C -0.416 4.416 3 S -0.001 6.001 4 C 0.061 3.939 5 C 0.226 3.774 6 C -0.166 4.166 7 C -0.076 4.076 8 C -0.190 4.190 9 C 0.102 3.898 10 N -0.440 5.440 11 N -0.349 5.349 12 C 0.220 3.780 13 C -0.425 4.425 14 H 0.087 0.913 15 C 0.068 3.932 16 N -0.735 5.735 17 Si 0.910 3.090 18 H -0.266 1.266 19 H -0.278 1.278 20 H -0.265 1.265 21 H 0.038 0.962 22 H 0.035 0.965 23 H 0.058 0.942 24 H 0.135 0.865 25 H 0.132 0.868 26 H 0.130 0.870 27 H 0.154 0.846 28 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.586 7.659 -0.040 8.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.538 4.538 3 S 0.248 5.752 4 C -0.218 4.218 5 C 0.086 3.914 6 C -0.188 4.188 7 C -0.102 4.102 8 C -0.211 4.211 9 C -0.058 4.058 10 N -0.150 5.150 11 N -0.063 5.063 12 C 0.095 3.905 13 C -0.459 4.459 14 H 0.105 0.895 15 C -0.156 4.156 16 N -0.357 5.357 17 Si 0.734 3.266 18 H -0.190 1.190 19 H -0.203 1.203 20 H -0.190 1.190 21 H 0.057 0.943 22 H 0.054 0.946 23 H 0.076 0.924 24 H 0.152 0.848 25 H 0.150 0.850 26 H 0.148 0.852 27 H 0.171 0.829 28 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.828 7.239 -0.042 8.701 hybrid contribution -0.355 -0.782 0.009 0.859 sum 4.473 6.457 -0.033 7.855 Atomic orbital electron populations 1.19489 0.89535 0.99896 0.99304 1.24263 0.99273 0.93371 1.36888 1.82336 1.01234 1.14205 1.77377 1.25313 0.93826 0.92028 1.10586 1.18938 0.90046 0.88634 0.93760 1.22033 0.97983 0.95703 1.03070 1.21370 0.92160 0.99953 0.96681 1.22149 1.00000 0.94780 1.04156 1.22845 0.93745 0.94064 0.95118 1.67914 0.98815 1.38547 1.09700 1.67434 1.17399 1.13318 1.08182 1.17835 0.84258 0.94002 0.94390 1.18947 0.94320 0.87943 1.44666 0.89523 1.26029 0.94754 1.01317 0.93523 1.70150 1.02530 1.32487 1.30523 0.86346 0.79281 0.81164 0.79763 1.19027 1.20308 1.19016 0.94337 0.94589 0.92355 0.84765 0.84968 0.85220 0.82924 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.48 10.00 36.01 0.36 -0.12 15 2 C -0.42 -10.43 6.48 -34.38 -0.22 -10.66 15 3 S 0.00 -0.02 22.02 -107.50 -2.37 -2.39 15 4 C 0.06 1.52 7.37 -14.49 -0.11 1.41 15 5 C 0.23 4.85 6.75 -83.02 -0.56 4.29 15 6 C -0.17 -2.78 9.63 -39.04 -0.38 -3.16 15 7 C -0.08 -1.01 10.16 -39.32 -0.40 -1.41 15 8 C -0.19 -2.48 10.11 -39.33 -0.40 -2.88 15 9 C 0.10 1.65 11.18 -17.58 -0.20 1.46 15 10 N -0.44 -9.53 10.25 -9.84 -0.10 -9.63 15 11 N -0.35 -9.92 8.37 -9.16 -0.08 -10.00 15 12 C 0.22 6.19 6.46 -86.46 -0.56 5.63 15 13 C -0.42 -11.73 8.90 -37.93 -0.34 -12.07 15 14 H 0.09 2.24 6.76 -52.48 -0.35 1.88 15 15 C 0.07 1.79 5.49 -17.35 -0.10 1.69 15 16 N -0.73 -20.53 11.69 55.53 0.65 -19.88 15 17 Si 0.91 19.39 29.56 -169.99 -5.02 14.37 15 18 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15 19 H -0.28 -5.79 7.11 56.52 0.40 -5.39 15 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15 21 H 0.04 0.77 8.14 -51.93 -0.42 0.34 15 22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 15 23 H 0.06 1.22 7.09 -51.93 -0.37 0.85 15 24 H 0.13 2.05 7.25 -52.49 -0.38 1.66 15 25 H 0.13 1.27 8.06 -52.49 -0.42 0.85 15 26 H 0.13 1.21 8.06 -52.49 -0.42 0.79 15 27 H 0.15 2.02 8.06 -52.49 -0.42 1.59 15 28 H 0.28 7.08 8.30 -40.82 -0.34 6.74 15 LS Contribution 265.58 15.07 4.00 4.00 Total: -1.00 -31.92 265.58 -8.16 -40.08 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -2.35 Total: -0.73 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -2.89 Total: -15.82 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.47 Total: -39.51 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.37 Total: -2.39 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.92 -8.16 -40.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074115427.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.320 kcal (2) G-P(sol) polarization free energy of solvation -31.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds