Wall clock time and date at job start Mon Mar 30 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.70997 * 125.56457 * 2 1 4 4 C 1.75916 * 90.76418 * 179.97438 * 3 2 1 5 5 C 1.47805 * 125.06102 * 180.02562 * 4 3 2 6 6 C 1.39555 * 119.74884 * 359.69599 * 5 4 3 7 7 C 1.38383 * 119.05372 * 179.75506 * 6 5 4 8 8 C 1.38798 * 118.51885 * 0.51234 * 7 6 5 9 9 C 1.38359 * 119.40344 * 359.72884 * 8 7 6 10 10 N 1.31668 * 120.91687 * 0.02562 * 9 8 7 11 11 N 1.29822 * 109.87506 * 359.97438 * 4 3 2 12 12 C 1.32673 * 116.03162 * 0.02562 * 11 4 3 13 13 C 1.41178 * 122.77253 * 180.26616 * 12 11 4 14 14 H 1.08005 * 120.00242 * 179.71162 * 13 12 11 15 15 C 1.39677 * 120.00177 * 359.71342 * 13 12 11 16 16 N 1.31035 * 119.99932 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00147 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47191 * 59.99796 * 17 15 13 19 19 H 1.48507 * 109.46874 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47186 * 299.99624 * 17 15 13 21 21 H 1.08994 * 109.47253 * 270.04607 * 1 2 3 22 22 H 1.09006 * 109.46885 * 30.04209 * 1 2 3 23 23 H 1.09002 * 109.47032 * 150.03877 * 1 2 3 24 24 H 1.07997 * 120.47364 * 359.97438 * 6 5 4 25 25 H 1.07996 * 120.74069 * 180.23565 * 7 6 5 26 26 H 1.07998 * 120.29833 * 179.70479 * 8 7 6 27 27 H 1.07992 * 119.54541 * 180.02562 * 9 8 7 28 28 H 0.97000 * 120.00221 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5016 1.3910 0.0000 4 6 3.9461 0.3870 0.0008 5 6 5.3338 0.8959 0.0017 6 6 5.5668 2.2718 -0.0044 7 6 6.8716 2.7325 0.0017 8 6 7.9025 1.8031 0.0028 9 6 7.5999 0.4530 0.0036 10 7 6.3497 0.0399 0.0027 11 7 3.6117 -0.8674 0.0015 12 6 2.3098 -1.1230 0.0010 13 6 1.7886 -2.4350 0.0072 14 1 0.7200 -2.5916 0.0112 15 6 2.6549 -3.5307 0.0082 16 7 3.9514 -3.3408 0.0029 17 14 1.9652 -5.2667 0.0157 18 1 1.1284 -5.4721 -1.1937 19 1 3.0837 -6.2436 0.0150 20 1 1.1354 -5.4644 1.2312 21 1 -0.3633 0.0008 1.0276 22 1 -0.3633 0.8897 -0.5145 23 1 -0.3633 -0.8904 -0.5132 24 1 4.7405 2.9672 -0.0103 25 1 7.0832 3.7915 0.0010 26 1 8.9316 2.1308 0.0028 27 1 8.4002 -0.2721 0.0049 28 1 4.5530 -4.1017 0.0032 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074115427.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:12 Heat of formation + Delta-G solvation = 50.131728 kcal Electronic energy + Delta-G solvation = -14672.785657 eV Core-core repulsion = 12200.366346 eV Total energy + Delta-G solvation = -2472.419312 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.97147 -39.62760 -35.20135 -33.67783 -33.27292 -31.88720 -29.23099 -26.50309 -25.08927 -24.22854 -22.90905 -20.80718 -18.84967 -17.97320 -17.22113 -16.88042 -16.65501 -16.34135 -15.48621 -15.18742 -14.54402 -14.52520 -13.91205 -13.61999 -13.39557 -13.31767 -13.19149 -12.87245 -12.67934 -12.39189 -12.21880 -11.36294 -11.24369 -10.82632 -10.33508 -10.24531 -9.88579 -9.65424 -8.96794 -8.38637 -6.33362 -0.39215 0.41804 0.80580 0.89625 1.35978 1.43425 1.49586 1.63246 2.23640 2.38072 3.01938 3.31000 3.53222 3.74131 4.06228 4.21144 4.24008 4.52997 4.66996 4.77026 4.84566 4.92131 4.95046 5.20504 5.24669 5.32106 5.39671 5.62375 5.82140 6.17981 6.58890 6.89660 7.16383 7.73968 8.47908 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.023840 B = 0.008208 C = 0.006126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.210677 B = 3410.657889 C = 4569.719628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 C -0.440 4.440 3 S 0.068 5.932 4 C 0.049 3.951 5 C 0.174 3.826 6 C -0.161 4.161 7 C -0.065 4.065 8 C -0.158 4.158 9 C 0.082 3.918 10 N -0.497 5.497 11 N -0.407 5.407 12 C 0.183 3.817 13 C -0.466 4.466 14 H 0.091 0.909 15 C 0.021 3.979 16 N -0.781 5.781 17 Si 0.989 3.011 18 H -0.258 1.258 19 H -0.272 1.272 20 H -0.258 1.258 21 H 0.049 0.951 22 H 0.060 0.940 23 H 0.054 0.946 24 H 0.146 0.854 25 H 0.184 0.816 26 H 0.182 0.818 27 H 0.174 0.826 28 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.659 9.812 -0.038 11.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.561 4.561 3 S 0.319 5.681 4 C -0.230 4.230 5 C 0.035 3.965 6 C -0.183 4.183 7 C -0.090 4.090 8 C -0.179 4.179 9 C -0.077 4.077 10 N -0.207 5.207 11 N -0.122 5.122 12 C 0.058 3.942 13 C -0.500 4.500 14 H 0.109 0.891 15 C -0.198 4.198 16 N -0.404 5.404 17 Si 0.809 3.191 18 H -0.182 1.182 19 H -0.196 1.196 20 H -0.182 1.182 21 H 0.068 0.932 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.164 0.836 25 H 0.202 0.798 26 H 0.199 0.801 27 H 0.191 0.809 28 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.878 9.430 -0.040 11.112 hybrid contribution -0.517 -1.159 0.010 1.269 sum 5.361 8.271 -0.030 9.857 Atomic orbital electron populations 1.19555 0.87223 1.00942 1.00283 1.24987 1.01474 0.94367 1.35283 1.81762 0.98828 1.11601 1.75908 1.26189 0.96540 0.91922 1.08327 1.18990 0.88689 0.90574 0.98234 1.22222 1.00379 0.93600 1.02132 1.21973 0.90295 1.02549 0.94182 1.22690 1.02527 0.92991 0.99644 1.23373 0.92415 0.96665 0.95273 1.67715 1.00841 1.40710 1.11461 1.67427 1.17817 1.15482 1.11468 1.18336 0.85159 0.95330 0.95399 1.19290 0.94838 0.88951 1.46897 0.89092 1.26981 0.94785 1.05650 0.92402 1.70314 1.04029 1.33604 1.32494 0.85170 0.78585 0.75268 0.80081 1.18179 1.19612 1.18194 0.93247 0.92112 0.92685 0.83607 0.79848 0.80110 0.80892 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.87 10.00 71.24 0.71 -0.16 15 2 C -0.44 -22.46 6.48 25.64 0.17 -22.29 15 3 S 0.07 3.01 22.02 -56.49 -1.24 1.77 15 4 C 0.05 2.50 7.37 87.52 0.64 3.14 15 5 C 0.17 7.56 6.75 41.84 0.28 7.84 15 6 C -0.16 -5.07 9.63 22.62 0.22 -4.86 15 7 C -0.06 -1.42 10.16 22.44 0.23 -1.19 15 8 C -0.16 -3.42 10.11 22.43 0.23 -3.19 15 9 C 0.08 2.54 11.18 84.75 0.95 3.49 15 10 N -0.50 -22.00 10.25 -185.05 -1.90 -23.89 15 11 N -0.41 -24.41 8.37 -182.90 -1.53 -25.94 15 12 C 0.18 10.78 6.46 39.69 0.26 11.04 15 13 C -0.47 -27.00 8.90 23.34 0.21 -26.80 15 14 H 0.09 4.91 6.76 -2.91 -0.02 4.89 15 15 C 0.02 1.15 5.49 85.16 0.47 1.62 15 16 N -0.78 -46.23 11.69 21.79 0.25 -45.98 15 17 Si 0.99 41.29 29.56 68.60 2.03 43.32 15 18 H -0.26 -10.28 7.11 99.48 0.71 -9.58 15 19 H -0.27 -10.87 7.11 99.48 0.71 -10.16 15 20 H -0.26 -10.30 7.11 99.48 0.71 -9.59 15 21 H 0.05 1.94 8.14 -2.39 -0.02 1.93 15 22 H 0.06 2.20 8.14 -2.38 -0.02 2.18 15 23 H 0.05 2.32 7.09 -2.39 -0.02 2.30 15 24 H 0.15 4.08 7.25 -2.91 -0.02 4.06 15 25 H 0.18 2.21 8.06 -2.91 -0.02 2.18 15 26 H 0.18 2.11 8.06 -2.91 -0.02 2.09 15 27 H 0.17 4.34 8.06 -2.91 -0.02 4.31 15 28 H 0.28 15.06 8.30 -92.71 -0.77 14.29 15 Total: -1.00 -76.33 265.58 3.15 -73.18 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 1.18 Total: 8.90 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: 4.36 Total: -31.35 kcal Atomic # 7 Polarization: -92.64 SS G_CDS: -3.17 Total: -95.82 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Atomic # 16 Polarization: 3.01 SS G_CDS: -1.24 Total: 1.77 kcal Total: -76.33 3.15 -73.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074115427.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.312 kcal (2) G-P(sol) polarization free energy of solvation -76.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds