Wall clock time and date at job start Mon Mar 30 2020 05:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38371 * 120.34629 * 2 1 4 4 N 1.31919 * 121.08987 * 179.76773 * 3 2 1 5 5 C 1.31691 * 121.88280 * 0.52725 * 4 3 2 6 6 C 1.39589 * 120.55577 * 359.47328 * 5 4 3 7 7 C 1.47769 * 120.55977 * 180.23475 * 6 5 4 8 8 N 1.29832 * 125.06696 * 359.72394 * 7 6 5 9 9 C 1.32766 * 116.01017 * 179.82053 * 8 7 6 10 10 C 1.41153 * 122.78019 * 180.21778 * 9 8 7 11 11 H 1.07991 * 120.00138 * 180.26481 * 10 9 8 12 12 C 1.39664 * 119.99608 * 0.26517 * 10 9 8 13 13 N 1.31045 * 119.99799 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 119.99776 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47311 * 90.00344 * 14 12 10 16 16 H 1.48504 * 109.47076 * 210.00191 * 14 12 10 17 17 H 1.48504 * 109.47160 * 329.99986 * 14 12 10 18 18 C 1.37988 * 114.45013 * 0.46312 * 9 8 7 19 19 S 1.70995 * 108.89256 * 359.75399 * 18 9 8 20 20 C 1.38345 * 120.34430 * 180.02562 * 2 1 3 21 21 H 1.09006 * 109.46917 * 269.97996 * 1 2 3 22 22 H 1.08997 * 109.47217 * 29.97843 * 1 2 3 23 23 H 1.09003 * 109.47504 * 149.98036 * 1 2 3 24 24 H 1.07999 * 119.44894 * 0.02562 * 3 2 1 25 25 H 1.08002 * 119.72457 * 179.75716 * 5 4 3 26 26 H 0.96996 * 119.99717 * 180.02562 * 13 12 10 27 27 H 1.07999 * 125.55579 * 179.73046 * 18 9 8 28 28 H 1.07998 * 120.85852 * 359.95901 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2060 1.1941 0.0000 4 7 3.5251 1.2113 0.0046 5 6 4.2351 0.1022 -0.0010 6 6 3.6054 -1.1436 -0.0009 7 6 4.4021 -2.3882 -0.0019 8 7 5.6992 -2.4435 -0.0080 9 6 6.2301 -3.6604 -0.0041 10 6 7.6234 -3.8864 -0.0051 11 1 8.0067 -4.8960 -0.0061 12 6 8.5063 -2.8042 -0.0050 13 7 8.0410 -1.5791 -0.0033 14 14 10.3501 -3.1031 -0.0072 15 1 10.8374 -3.1809 -1.4078 16 1 11.0335 -1.9862 0.6934 17 1 10.6454 -4.3800 0.6913 18 6 5.3071 -4.6861 -0.0042 19 16 3.7341 -4.0156 -0.0026 20 6 2.2058 -1.1939 -0.0005 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3633 0.8901 -0.5135 23 1 -0.3634 -0.8898 -0.5141 24 1 1.6627 2.1275 0.0004 25 1 5.3138 0.1569 -0.0009 26 1 8.6542 -0.8275 -0.0035 27 1 5.5402 -5.7407 -0.0055 28 1 1.6856 -2.1403 -0.0003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074115430.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:03 Heat of formation + Delta-G solvation = 63.181385 kcal Electronic energy + Delta-G solvation = -14561.140907 eV Core-core repulsion = 12089.287471 eV Total energy + Delta-G solvation = -2471.853436 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.81246 -37.80952 -33.49004 -33.35896 -32.11364 -28.78690 -27.04057 -25.71112 -24.25680 -22.67797 -21.02820 -18.81985 -17.70533 -16.58813 -15.69664 -15.53809 -15.22658 -14.31025 -14.15169 -13.37601 -13.06479 -12.91110 -12.77664 -12.45682 -12.40748 -11.78230 -11.61432 -11.43050 -11.26394 -10.76731 -10.48312 -9.79412 -9.76609 -9.23679 -9.19176 -8.75435 -8.18127 -7.99042 -7.25675 -6.60137 -4.43998 1.05809 1.54642 2.46795 2.70546 3.04243 3.08261 3.11990 3.50849 3.96501 4.05191 4.40506 4.67717 4.94045 5.01618 5.21551 5.35047 5.43760 5.45558 5.59188 5.83931 5.95558 6.09986 6.37842 6.51500 6.77094 6.99192 7.08506 7.16617 7.37248 8.11618 8.32431 8.45700 8.80587 9.46510 10.28120 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.031174 B = 0.006809 C = 0.005605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.968902 B = 4111.503507 C = 4994.326366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.144 4.144 3 C 0.086 3.914 4 N -0.483 5.483 5 C 0.132 3.868 6 C -0.037 4.037 7 C 0.072 3.928 8 N -0.381 5.381 9 C 0.227 3.773 10 C -0.430 4.430 11 H 0.085 0.915 12 C 0.072 3.928 13 N -0.751 5.751 14 Si 0.914 3.086 15 H -0.269 1.269 16 H -0.276 1.276 17 H -0.262 1.262 18 C -0.447 4.447 19 S -0.008 6.008 20 C -0.071 4.071 21 H 0.070 0.930 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.150 0.850 25 H 0.176 0.824 26 H 0.276 0.724 27 H 0.141 0.859 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.640 3.253 0.016 10.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.146 4.146 3 C -0.072 4.072 4 N -0.191 5.191 5 C -0.028 4.028 6 C -0.043 4.043 7 C -0.207 4.207 8 N -0.096 5.096 9 C 0.103 3.897 10 C -0.465 4.465 11 H 0.104 0.896 12 C -0.151 4.151 13 N -0.374 5.374 14 Si 0.738 3.262 15 H -0.194 1.194 16 H -0.201 1.201 17 H -0.186 1.186 18 C -0.587 4.587 19 S 0.242 5.758 20 C -0.099 4.099 21 H 0.088 0.912 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.167 0.833 25 H 0.193 0.807 26 H 0.086 0.914 27 H 0.159 0.841 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.743 4.293 0.020 10.647 hybrid contribution 1.428 -1.332 -0.003 1.952 sum -8.316 2.961 0.018 8.827 Atomic orbital electron populations 1.20669 0.90402 1.02826 1.02331 1.20712 0.97249 0.93825 1.02817 1.22658 0.90322 0.97042 0.97160 1.67731 1.07718 1.31420 1.12184 1.23245 1.01369 0.85760 0.92451 1.19066 0.92290 0.92274 1.00650 1.25625 0.92871 0.93815 1.08387 1.67401 1.05311 1.25958 1.10942 1.17863 0.94937 0.83486 0.93437 1.18959 0.88154 0.94226 1.45140 0.89643 1.25974 1.01398 0.94752 0.92988 1.70071 1.36490 0.98805 1.32055 0.86227 0.81683 0.79134 0.79169 1.19446 1.20123 1.18649 1.25377 0.92754 1.02416 1.38118 1.82441 1.13089 1.03769 1.76505 1.21506 0.92707 0.98385 0.97299 0.91157 0.91389 0.91463 0.83289 0.80744 0.91352 0.84082 0.84868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 10.03 36.00 0.36 -0.65 15 2 C -0.14 -2.00 5.89 -104.54 -0.62 -2.62 15 3 C 0.09 1.27 10.85 -17.47 -0.19 1.08 15 4 N -0.48 -8.74 10.35 -12.89 -0.13 -8.88 15 5 C 0.13 2.65 10.85 -17.11 -0.19 2.47 15 6 C -0.04 -0.74 5.89 -104.82 -0.62 -1.36 15 7 C 0.07 1.68 7.31 -14.50 -0.11 1.57 15 8 N -0.38 -10.23 8.01 -9.17 -0.07 -10.30 15 9 C 0.23 6.25 6.45 -86.45 -0.56 5.69 15 10 C -0.43 -11.70 9.23 -37.94 -0.35 -12.05 15 11 H 0.09 2.20 7.84 -52.49 -0.41 1.79 15 12 C 0.07 1.83 5.49 -17.36 -0.10 1.74 15 13 N -0.75 -19.84 11.69 55.53 0.65 -19.20 15 14 Si 0.91 18.93 29.56 -169.99 -5.02 13.90 15 15 H -0.27 -5.51 7.11 56.52 0.40 -5.11 15 16 H -0.28 -5.60 7.11 56.52 0.40 -5.20 15 17 H -0.26 -5.36 7.11 56.52 0.40 -4.96 15 18 C -0.45 -11.24 10.99 30.64 0.34 -10.91 15 19 S -0.01 -0.18 22.16 -107.50 -2.38 -2.56 15 20 C -0.07 -1.17 9.39 -38.86 -0.37 -1.53 15 21 H 0.07 0.60 8.14 -51.93 -0.42 0.18 15 22 H 0.07 0.54 8.09 -51.93 -0.42 0.12 15 23 H 0.07 0.60 8.09 -51.93 -0.42 0.18 15 24 H 0.15 1.67 8.06 -52.49 -0.42 1.24 15 25 H 0.18 3.82 7.81 -52.49 -0.41 3.41 15 26 H 0.28 6.64 8.30 -40.82 -0.34 6.30 15 27 H 0.14 3.36 8.06 -52.49 -0.42 2.93 15 28 H 0.13 1.99 7.38 -52.49 -0.39 1.61 15 LS Contribution 267.24 15.07 4.03 4.03 Total: -1.00 -29.28 267.24 -7.77 -37.05 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -2.45 Total: 2.50 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -2.38 Total: -16.56 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.44 Total: -38.37 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.02 Total: 13.90 kcal Atomic # 16 Polarization: -0.18 SS G_CDS: -2.38 Total: -2.56 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.28 -7.77 -37.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074115430.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.236 kcal (2) G-P(sol) polarization free energy of solvation -29.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds