Wall clock time and date at job start Mon Mar 30 2020 05:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38801 * 120.73822 * 2 1 4 4 C 1.38361 * 119.40261 * 180.02562 * 3 2 1 5 5 N 1.31664 * 120.91431 * 359.97438 * 4 3 2 6 6 C 1.32842 * 121.60432 * 0.02562 * 5 4 3 7 7 C 1.47803 * 119.74444 * 179.97438 * 6 5 4 8 8 N 1.29819 * 125.07032 * 0.25558 * 7 6 5 9 9 C 1.32675 * 116.03707 * 180.19886 * 8 7 6 10 10 C 1.41178 * 122.77311 * 179.80004 * 9 8 7 11 11 H 1.08004 * 120.00111 * 186.41568 * 10 9 8 12 12 C 1.39682 * 120.00349 * 6.42128 * 10 9 8 13 13 N 1.31025 * 120.00122 * 182.46933 * 12 10 9 14 14 Si 1.86803 * 119.99649 * 2.47390 * 12 10 9 15 15 H 1.48500 * 109.46979 * 179.97438 * 14 12 10 16 16 H 1.48496 * 109.46936 * 299.99845 * 14 12 10 17 17 H 1.48500 * 109.47364 * 59.99819 * 14 12 10 18 18 C 1.38040 * 114.45326 * 359.53501 * 9 8 7 19 19 S 1.70999 * 108.87157 * 0.24517 * 18 9 8 20 20 C 1.38385 * 120.74188 * 180.26014 * 2 1 3 21 21 H 1.09000 * 109.46918 * 90.00467 * 1 2 3 22 22 H 1.09003 * 109.46506 * 210.00073 * 1 2 3 23 23 H 1.09000 * 109.47195 * 329.99708 * 1 2 3 24 24 H 1.08004 * 120.29719 * 359.97292 * 3 2 1 25 25 H 1.08000 * 119.53797 * 180.02562 * 4 3 2 26 26 H 0.97003 * 120.00401 * 354.80036 * 13 12 10 27 27 H 1.07995 * 125.56442 * 180.22486 * 18 9 8 28 28 H 1.07998 * 120.47409 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2165 1.1930 0.0000 4 6 3.5997 1.1608 -0.0005 5 7 4.2496 0.0157 -0.0005 6 6 3.6093 -1.1482 -0.0005 7 6 4.3802 -2.4093 -0.0011 8 7 5.6758 -2.4915 0.0031 9 6 6.1815 -3.7181 -0.0025 10 6 7.5702 -3.9721 -0.0031 11 1 7.9342 -4.9831 -0.1122 12 6 8.4736 -2.9161 0.1375 13 7 9.7626 -3.1456 0.0884 14 14 7.8438 -1.1765 0.3956 15 1 8.9949 -0.2460 0.5157 16 1 7.0029 -0.7777 -0.7615 17 1 7.0329 -1.1229 1.6385 18 6 5.2376 -4.7253 -0.0017 19 16 3.6787 -4.0225 -0.0006 20 6 2.2144 -1.1894 -0.0054 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3632 -0.8900 0.5139 23 1 -0.3633 0.8899 0.5139 24 1 1.6934 2.1380 -0.0004 25 1 4.1539 2.0877 -0.0001 26 1 10.0913 -4.0564 0.0303 27 1 5.4491 -5.7844 -0.0022 28 1 1.6944 -2.1359 -0.0101 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074115434.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:19 Heat of formation + Delta-G solvation = 55.247000 kcal Electronic energy + Delta-G solvation = -14717.532810 eV Core-core repulsion = 12245.335313 eV Total energy + Delta-G solvation = -2472.197497 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.04753 -38.23927 -34.01161 -33.37543 -31.84997 -28.97801 -27.85829 -25.92911 -24.41036 -22.92307 -20.77179 -19.11653 -18.22356 -16.69195 -16.01481 -15.91989 -15.44700 -14.42296 -14.33070 -13.50008 -13.42375 -12.98849 -12.71364 -12.63472 -12.62470 -12.24216 -11.88973 -11.55650 -10.73866 -10.65455 -10.13565 -9.56143 -9.51301 -9.36934 -9.22758 -8.97681 -8.36836 -8.02030 -7.56088 -7.18294 -4.57288 0.77631 1.36407 2.15118 2.27431 3.22457 3.52046 3.70835 3.96224 4.11355 4.30191 4.37552 4.51273 4.65070 4.73159 5.11321 5.19244 5.25586 5.32634 5.39950 5.52477 5.76639 5.85897 5.93669 6.27277 6.42089 6.77754 6.81724 7.07940 7.58639 8.03276 8.12613 8.22288 8.70851 9.02453 10.14836 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.028462 B = 0.008538 C = 0.006603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.521759 B = 3278.672329 C = 4239.440504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.043 4.043 3 C -0.181 4.181 4 C 0.108 3.892 5 N -0.455 5.455 6 C 0.217 3.783 7 C 0.086 3.914 8 N -0.441 5.441 9 C 0.207 3.793 10 C -0.476 4.476 11 H 0.082 0.918 12 C 0.043 3.957 13 N -0.820 5.820 14 Si 1.124 2.876 15 H -0.321 1.321 16 H -0.262 1.262 17 H -0.288 1.288 18 C -0.442 4.442 19 S 0.057 5.943 20 C -0.158 4.158 21 H 0.076 0.924 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.133 0.867 25 H 0.158 0.842 26 H 0.281 0.719 27 H 0.148 0.852 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.658 7.021 -0.025 18.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.051 4.051 3 C -0.202 4.202 4 C -0.051 4.051 5 N -0.165 5.165 6 C 0.078 3.922 7 C -0.190 4.190 8 N -0.161 5.161 9 C 0.084 3.916 10 C -0.511 4.511 11 H 0.100 0.900 12 C -0.176 4.176 13 N -0.443 5.443 14 Si 0.955 3.045 15 H -0.253 1.253 16 H -0.188 1.188 17 H -0.215 1.215 18 C -0.582 4.582 19 S 0.306 5.694 20 C -0.180 4.180 21 H 0.094 0.906 22 H 0.090 0.910 23 H 0.089 0.911 24 H 0.151 0.849 25 H 0.176 0.824 26 H 0.092 0.908 27 H 0.165 0.835 28 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.795 8.498 0.111 17.936 hybrid contribution -0.206 -2.199 -0.180 2.216 sum -16.001 6.299 -0.068 17.196 Atomic orbital electron populations 1.20803 0.90124 1.03253 1.02821 1.20164 0.96642 0.92576 0.95681 1.22089 0.95673 0.98416 1.04049 1.22835 0.91537 0.96087 0.94659 1.67812 1.40556 0.97436 1.10716 1.18819 0.88997 0.89507 0.94892 1.25056 0.91983 0.94314 1.07621 1.66057 1.09162 1.25365 1.15468 1.18058 0.95728 0.83704 0.94091 1.20069 0.88520 0.97166 1.45298 0.89957 1.27588 0.92920 1.07909 0.89167 1.70734 1.14551 1.25417 1.33569 0.82443 0.71353 0.70445 0.80246 1.25310 1.18768 1.21541 1.25354 0.92643 1.02673 1.37487 1.82390 1.12260 1.00071 1.74630 1.21888 0.93614 0.99180 1.03366 0.90560 0.90965 0.91068 0.84864 0.82446 0.90829 0.83478 0.84511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.06 36.01 0.36 -0.55 15 2 C -0.04 -0.52 5.91 -104.36 -0.62 -1.14 15 3 C -0.18 -2.12 9.82 -39.33 -0.39 -2.51 15 4 C 0.11 1.57 11.18 -17.58 -0.20 1.38 15 5 N -0.45 -9.05 10.25 -9.84 -0.10 -9.15 15 6 C 0.22 4.27 6.75 -83.03 -0.56 3.71 15 7 C 0.09 1.99 7.37 -14.49 -0.11 1.88 15 8 N -0.44 -11.78 5.22 -9.16 -0.05 -11.83 15 9 C 0.21 5.72 6.26 -86.46 -0.54 5.18 15 10 C -0.48 -13.88 9.67 -37.93 -0.37 -14.25 15 11 H 0.08 2.40 8.05 -52.48 -0.42 1.98 15 12 C 0.04 1.26 5.51 -17.36 -0.10 1.17 15 13 N -0.82 -23.81 13.67 55.53 0.76 -23.06 15 14 Si 1.12 30.03 25.67 -169.99 -4.36 25.67 15 15 H -0.32 -8.40 7.11 56.52 0.40 -7.99 15 16 H -0.26 -7.03 6.75 56.52 0.38 -6.65 15 17 H -0.29 -7.81 7.11 56.52 0.40 -7.41 15 18 C -0.44 -10.84 10.99 30.66 0.34 -10.50 15 19 S 0.06 1.16 22.04 -107.50 -2.37 -1.21 15 20 C -0.16 -2.39 9.33 -39.04 -0.36 -2.76 15 21 H 0.08 0.54 8.14 -51.93 -0.42 0.11 15 22 H 0.07 0.53 8.10 -51.93 -0.42 0.11 15 23 H 0.07 0.46 8.10 -51.93 -0.42 0.04 15 24 H 0.13 1.08 8.06 -52.48 -0.42 0.66 15 25 H 0.16 1.80 8.06 -52.49 -0.42 1.37 15 26 H 0.28 7.80 8.73 -40.82 -0.36 7.44 15 27 H 0.15 3.43 8.06 -52.49 -0.42 3.01 15 28 H 0.14 1.83 7.25 -52.49 -0.38 1.45 15 LS Contribution 263.21 15.07 3.97 3.97 Total: -1.00 -32.66 263.21 -7.20 -39.86 By element: Atomic # 1 Polarization: -3.36 SS G_CDS: -2.51 Total: -5.87 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -2.54 Total: -18.38 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 0.61 Total: -44.04 kcal Atomic # 14 Polarization: 30.03 SS G_CDS: -4.36 Total: 25.67 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.37 Total: -1.21 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -32.66 -7.20 -39.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074115434.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.105 kcal (2) G-P(sol) polarization free energy of solvation -32.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds