Wall clock time and date at job start Mon Mar 30 2020 06:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.34990 * 117.00247 * 2 1 4 4 O 1.21650 * 119.99991 * 359.97438 * 3 2 1 5 5 C 1.46382 * 120.00321 * 180.02562 * 3 2 1 6 6 O 1.34560 * 125.56158 * 6.12250 * 5 3 2 7 7 C 1.34901 * 111.60098 * 180.02562 * 6 5 3 8 8 C 1.39127 * 132.38845 * 179.97438 * 7 6 5 9 9 C 1.37834 * 120.05073 * 180.02562 * 8 7 6 10 10 C 1.38666 * 120.67505 * 0.02562 * 9 8 7 11 11 C 1.37903 * 120.15236 * 359.97438 * 10 9 8 12 12 C 1.39142 * 119.66429 * 0.02562 * 11 10 9 13 13 C 1.40575 * 125.57092 * 186.11863 * 5 3 2 14 14 C 1.40008 * 127.39993 * 0.02562 * 13 5 3 15 15 H 1.07998 * 120.00412 * 32.67571 * 14 13 5 16 16 C 1.40607 * 120.00294 * 212.66827 * 14 13 5 17 17 N 1.30472 * 119.99661 * 14.60444 * 16 14 13 18 18 Si 1.86800 * 120.00506 * 194.59833 * 16 14 13 19 19 H 1.48497 * 109.46741 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46967 * 120.00281 * 18 16 14 21 21 H 1.48495 * 109.47376 * 240.00379 * 18 16 14 22 22 H 1.08994 * 109.47421 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46999 * 300.00439 * 1 2 3 24 24 H 1.09000 * 109.47059 * 60.00246 * 1 2 3 25 25 H 1.07999 * 119.97443 * 0.02562 * 8 7 6 26 26 H 1.08004 * 119.66881 * 180.27208 * 9 8 7 27 27 H 1.07994 * 119.92630 * 179.97438 * 10 9 8 28 28 H 1.07992 * 120.16144 * 180.02562 * 11 10 9 29 29 H 0.96996 * 119.99848 * 174.93233 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0418 1.2027 0.0000 4 8 1.3793 2.2230 -0.0005 5 6 3.5036 1.2794 -0.0006 6 8 4.3421 0.2335 -0.1179 7 6 5.6325 0.6251 -0.0830 8 6 6.8292 -0.0798 -0.1652 9 6 8.0314 0.5911 -0.0994 10 6 8.0652 1.9693 0.0492 11 6 6.8900 2.6861 0.1325 12 6 5.6705 2.0191 0.0673 13 6 4.2608 2.4575 0.1212 14 6 3.7817 3.7652 0.2649 15 1 2.8604 3.9473 0.7982 16 6 4.5001 4.8416 -0.2851 17 7 5.4419 4.6181 -1.1598 18 14 4.1059 6.5914 0.2366 19 1 3.0053 6.5747 1.2333 20 1 5.3121 7.2110 0.8419 21 1 3.6874 7.3795 -0.9504 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 6.8160 -1.1536 -0.2806 26 1 8.9566 0.0382 -0.1683 27 1 9.0139 2.4827 0.0998 28 1 6.9161 3.7595 0.2479 29 1 5.8872 5.3625 -1.5939 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075624865.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:55 Heat of formation + Delta-G solvation = -70.049847 kcal Electronic energy + Delta-G solvation = -17346.190036 eV Core-core repulsion = 14393.513638 eV Total energy + Delta-G solvation = -2952.676398 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.072 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.73434 -38.98881 -36.67572 -35.41505 -34.40950 -31.20808 -29.43917 -28.87805 -27.31037 -25.69291 -23.04033 -21.50370 -20.65172 -19.58897 -17.46649 -17.18762 -15.95802 -15.80429 -15.51964 -14.99704 -14.86417 -14.45627 -13.81218 -13.20831 -12.89144 -12.62448 -12.34313 -12.27922 -11.61987 -11.48041 -11.32450 -11.23515 -11.15799 -10.78221 -10.40633 -9.89854 -9.86309 -9.67420 -9.31400 -8.71371 -7.60723 -7.34565 -7.01375 -4.73330 1.71560 2.31675 2.70979 2.91702 3.00122 3.11169 3.65293 3.71271 4.06702 4.29506 4.59110 4.99070 5.61535 5.68160 5.69744 5.73803 5.79722 5.95037 6.16703 6.28958 6.39770 6.62963 6.73599 6.82399 7.08840 7.22186 7.28714 7.42153 7.56153 7.70099 8.05899 8.26168 8.32384 8.59752 9.18088 9.73503 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.014778 B = 0.012333 C = 0.006889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.231072 B = 2269.858767 C = 4063.372304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.366 6.366 3 C 0.539 3.461 4 O -0.530 6.530 5 C -0.253 4.253 6 O -0.200 6.200 7 C 0.093 3.907 8 C -0.155 4.155 9 C -0.089 4.089 10 C -0.191 4.191 11 C -0.009 4.009 12 C -0.135 4.135 13 C 0.132 3.868 14 C -0.386 4.386 15 H 0.107 0.893 16 C 0.071 3.929 17 N -0.759 5.759 18 Si 0.923 3.077 19 H -0.253 1.253 20 H -0.267 1.267 21 H -0.268 1.268 22 H 0.087 0.913 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.116 0.884 26 H 0.118 0.882 27 H 0.113 0.887 28 H 0.125 0.875 29 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.025 -1.861 1.462 3.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.284 6.284 3 C 0.394 3.606 4 O -0.425 6.425 5 C -0.298 4.298 6 O -0.105 6.105 7 C 0.043 3.957 8 C -0.174 4.174 9 C -0.107 4.107 10 C -0.210 4.210 11 C -0.028 4.028 12 C -0.136 4.136 13 C 0.128 3.872 14 C -0.412 4.412 15 H 0.125 0.875 16 C -0.152 4.152 17 N -0.382 5.382 18 Si 0.745 3.255 19 H -0.176 1.176 20 H -0.192 1.192 21 H -0.192 1.192 22 H 0.105 0.895 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.134 0.866 26 H 0.136 0.864 27 H 0.131 0.869 28 H 0.143 0.857 29 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.893 -1.748 1.326 2.898 hybrid contribution -0.268 0.825 -0.031 0.868 sum 1.626 -0.923 1.295 2.274 Atomic orbital electron populations 1.22610 0.79177 1.01978 1.01524 1.86248 1.21316 1.34559 1.86325 1.18947 0.85620 0.80645 0.75355 1.90785 1.64557 1.35419 1.51707 1.19878 0.85728 0.85548 1.38678 1.83655 1.12581 1.34898 1.79368 1.19749 0.84514 0.93416 0.97997 1.19686 0.88484 0.98976 1.10233 1.20628 0.95948 0.94387 0.99737 1.20813 0.97531 0.94030 1.08588 1.20661 0.89881 0.99685 0.92539 1.19958 0.94517 0.92382 1.06750 1.18604 0.87789 0.92111 0.88728 1.19450 1.06581 0.88809 1.26366 0.87491 1.26315 0.92456 1.03012 0.93441 1.69664 1.16492 1.35822 1.16256 0.85991 0.80024 0.79276 0.80181 1.17577 1.19162 1.19248 0.89461 0.93112 0.93085 0.86557 0.86429 0.86939 0.85747 0.89629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 10.45 101.05 1.06 1.77 15 2 O -0.37 -8.26 10.49 -42.99 -0.45 -8.71 15 3 C 0.54 13.97 7.91 34.01 0.27 14.24 15 4 O -0.53 -14.31 15.03 -19.38 -0.29 -14.60 15 5 C -0.25 -6.89 7.26 -35.43 -0.26 -7.15 15 6 O -0.20 -5.25 10.54 2.80 0.03 -5.22 15 7 C 0.09 2.25 7.35 -38.49 -0.28 1.97 15 8 C -0.15 -3.08 10.06 -39.40 -0.40 -3.47 15 9 C -0.09 -1.56 10.01 -39.57 -0.40 -1.96 15 10 C -0.19 -3.57 10.04 -39.55 -0.40 -3.97 15 11 C -0.01 -0.21 8.75 -39.37 -0.34 -0.55 15 12 C -0.13 -3.39 5.78 -104.92 -0.61 -4.00 15 13 C 0.13 3.61 5.76 -104.47 -0.60 3.01 15 14 C -0.39 -10.18 8.44 -38.03 -0.32 -10.50 15 15 H 0.11 2.87 7.04 -52.49 -0.37 2.50 15 16 C 0.07 1.68 5.08 -17.24 -0.09 1.60 15 17 N -0.76 -17.98 10.09 55.58 0.56 -17.42 15 18 Si 0.92 17.61 29.59 -169.99 -5.03 12.58 15 19 H -0.25 -4.90 7.11 56.52 0.40 -4.50 15 20 H -0.27 -4.84 7.11 56.52 0.40 -4.44 15 21 H -0.27 -5.02 7.11 56.52 0.40 -4.62 15 22 H 0.09 1.13 8.14 -51.93 -0.42 0.71 15 23 H 0.05 0.83 8.13 -51.93 -0.42 0.41 15 24 H 0.05 0.84 8.13 -51.93 -0.42 0.42 15 25 H 0.12 1.99 8.06 -52.49 -0.42 1.57 15 26 H 0.12 1.61 8.06 -52.48 -0.42 1.19 15 27 H 0.11 1.75 8.06 -52.49 -0.42 1.33 15 28 H 0.12 2.75 6.35 -52.49 -0.33 2.41 15 29 H 0.29 6.13 8.30 -40.82 -0.34 5.79 15 LS Contribution 264.22 15.07 3.98 3.98 Total: -1.00 -29.70 264.22 -5.94 -35.64 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -2.37 Total: 2.76 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -2.37 Total: -9.01 kcal Atomic # 7 Polarization: -17.98 SS G_CDS: 0.56 Total: -17.42 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.71 Total: -28.53 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.70 -5.94 -35.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075624865.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.406 kcal (2) G-P(sol) polarization free energy of solvation -29.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds