Wall clock time and date at job start Mon Mar 30 2020 06:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.34990 * 117.00247 * 2 1 4 4 O 1.21650 * 119.99991 * 359.97438 * 3 2 1 5 5 C 1.46382 * 120.00321 * 180.02562 * 3 2 1 6 6 O 1.34560 * 125.56158 * 6.12250 * 5 3 2 7 7 C 1.34901 * 111.60098 * 180.02562 * 6 5 3 8 8 C 1.39127 * 132.38845 * 179.97438 * 7 6 5 9 9 C 1.37834 * 120.05073 * 180.02562 * 8 7 6 10 10 C 1.38666 * 120.67505 * 0.02562 * 9 8 7 11 11 C 1.37903 * 120.15236 * 359.97438 * 10 9 8 12 12 C 1.39142 * 119.66429 * 0.02562 * 11 10 9 13 13 C 1.40575 * 125.57092 * 186.11863 * 5 3 2 14 14 C 1.40008 * 127.39993 * 0.02562 * 13 5 3 15 15 H 1.07998 * 120.00412 * 32.67571 * 14 13 5 16 16 C 1.40607 * 120.00294 * 212.66827 * 14 13 5 17 17 N 1.30472 * 119.99661 * 14.60444 * 16 14 13 18 18 Si 1.86800 * 120.00506 * 194.59833 * 16 14 13 19 19 H 1.48497 * 109.46741 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46967 * 120.00281 * 18 16 14 21 21 H 1.48495 * 109.47376 * 240.00379 * 18 16 14 22 22 H 1.08994 * 109.47421 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46999 * 300.00439 * 1 2 3 24 24 H 1.09000 * 109.47059 * 60.00246 * 1 2 3 25 25 H 1.07999 * 119.97443 * 0.02562 * 8 7 6 26 26 H 1.08004 * 119.66881 * 180.27208 * 9 8 7 27 27 H 1.07994 * 119.92630 * 179.97438 * 10 9 8 28 28 H 1.07992 * 120.16144 * 180.02562 * 11 10 9 29 29 H 0.96996 * 119.99848 * 174.93233 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0418 1.2027 0.0000 4 8 1.3793 2.2230 -0.0005 5 6 3.5036 1.2794 -0.0006 6 8 4.3421 0.2335 -0.1179 7 6 5.6325 0.6251 -0.0830 8 6 6.8292 -0.0798 -0.1652 9 6 8.0314 0.5911 -0.0994 10 6 8.0652 1.9693 0.0492 11 6 6.8900 2.6861 0.1325 12 6 5.6705 2.0191 0.0673 13 6 4.2608 2.4575 0.1212 14 6 3.7817 3.7652 0.2649 15 1 2.8604 3.9473 0.7982 16 6 4.5001 4.8416 -0.2851 17 7 5.4419 4.6181 -1.1598 18 14 4.1059 6.5914 0.2366 19 1 3.0053 6.5747 1.2333 20 1 5.3121 7.2110 0.8419 21 1 3.6874 7.3795 -0.9504 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 6.8160 -1.1536 -0.2806 26 1 8.9566 0.0382 -0.1683 27 1 9.0139 2.4827 0.0998 28 1 6.9161 3.7595 0.2479 29 1 5.8872 5.3625 -1.5939 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075624865.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:54 Heat of formation + Delta-G solvation = -87.623449 kcal Electronic energy + Delta-G solvation = -17346.952085 eV Core-core repulsion = 14393.513638 eV Total energy + Delta-G solvation = -2953.438447 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.53130 -40.82954 -38.32257 -37.28481 -36.26162 -33.03487 -31.09242 -30.59739 -28.93699 -27.48276 -24.76401 -23.19129 -22.40905 -21.42411 -19.28625 -18.97944 -17.77513 -17.59881 -17.31288 -16.64980 -16.47057 -16.25218 -15.42265 -14.85008 -14.54682 -14.28638 -14.07726 -14.00030 -13.32636 -13.16902 -12.87097 -12.84312 -12.77856 -12.43629 -12.01834 -11.59835 -11.59117 -11.46182 -11.19256 -10.47823 -9.29705 -9.15028 -8.80484 -6.70453 -0.04262 0.66071 1.06457 1.33147 1.46508 1.50191 1.92599 2.11583 2.17698 2.57772 2.82337 3.17826 4.04259 4.13372 4.31276 4.36054 4.40755 4.56091 4.61082 4.65528 4.75831 4.92468 4.96972 5.13981 5.39054 5.52820 5.59865 5.70447 5.84504 6.06112 6.10689 6.34412 6.42958 6.72033 7.27099 7.97008 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.014778 B = 0.012333 C = 0.006889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.231072 B = 2269.858767 C = 4063.372304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.373 6.373 3 C 0.533 3.467 4 O -0.557 6.557 5 C -0.294 4.294 6 O -0.219 6.219 7 C 0.061 3.939 8 C -0.155 4.155 9 C -0.069 4.069 10 C -0.176 4.176 11 C -0.029 4.029 12 C -0.168 4.168 13 C 0.103 3.897 14 C -0.413 4.413 15 H 0.087 0.913 16 C 0.039 3.961 17 N -0.772 5.772 18 Si 0.994 3.006 19 H -0.264 1.264 20 H -0.243 1.243 21 H -0.256 1.256 22 H 0.134 0.866 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.145 0.855 26 H 0.174 0.826 27 H 0.154 0.846 28 H 0.118 0.882 29 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.508 -1.662 1.324 4.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.291 6.291 3 C 0.390 3.610 4 O -0.455 6.455 5 C -0.340 4.340 6 O -0.125 6.125 7 C 0.013 3.987 8 C -0.174 4.174 9 C -0.086 4.086 10 C -0.194 4.194 11 C -0.048 4.048 12 C -0.169 4.169 13 C 0.099 3.901 14 C -0.438 4.438 15 H 0.105 0.895 16 C -0.184 4.184 17 N -0.395 5.395 18 Si 0.812 3.188 19 H -0.188 1.188 20 H -0.167 1.167 21 H -0.180 1.180 22 H 0.152 0.848 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.163 0.837 26 H 0.191 0.809 27 H 0.172 0.828 28 H 0.136 0.864 29 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.396 -1.591 1.176 4.821 hybrid contribution -0.902 0.702 -0.023 1.143 sum 3.494 -0.889 1.153 3.786 Atomic orbital electron populations 1.23051 0.76203 1.05092 1.01777 1.86209 1.24292 1.32744 1.85850 1.18971 0.85596 0.81231 0.75193 1.90729 1.65082 1.36321 1.53319 1.20259 0.86732 0.86329 1.40669 1.83579 1.13559 1.34738 1.80661 1.20442 0.84909 0.93937 0.99443 1.20246 0.87524 1.00593 1.09035 1.21269 0.97014 0.94158 0.96176 1.21326 0.97715 0.94773 1.05566 1.20793 0.90240 0.99759 0.93982 1.20161 0.94487 0.93333 1.08946 1.19122 0.89637 0.92568 0.88805 1.19575 1.06814 0.90019 1.27426 0.89461 1.27125 0.92004 1.06410 0.92836 1.69653 1.16185 1.37878 1.15771 0.84980 0.80208 0.73792 0.79789 1.18780 1.16672 1.18049 0.84832 0.92784 0.92969 0.83692 0.80895 0.82806 0.86391 0.88059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.10 10.45 113.37 1.18 2.29 15 2 O -0.37 -17.46 10.49 -57.46 -0.60 -18.06 15 3 C 0.53 29.37 7.91 69.94 0.55 29.92 15 4 O -0.56 -31.98 15.03 19.34 0.29 -31.69 15 5 C -0.29 -17.13 7.26 24.96 0.18 -16.95 15 6 O -0.22 -12.07 10.54 -10.45 -0.11 -12.18 15 7 C 0.06 3.02 7.35 22.98 0.17 3.19 15 8 C -0.16 -5.81 10.06 22.39 0.23 -5.59 15 9 C -0.07 -2.09 10.01 22.28 0.22 -1.87 15 10 C -0.18 -5.91 10.04 22.29 0.22 -5.69 15 11 C -0.03 -1.29 8.75 22.41 0.20 -1.09 15 12 C -0.17 -8.69 5.78 -20.06 -0.12 -8.81 15 13 C 0.10 5.98 5.76 -19.77 -0.11 5.86 15 14 C -0.41 -22.98 8.44 23.28 0.20 -22.78 15 15 H 0.09 5.04 7.04 -2.91 -0.02 5.02 15 16 C 0.04 1.85 5.08 85.47 0.43 2.29 15 17 N -0.77 -36.69 10.09 21.94 0.22 -36.47 15 18 Si 0.99 35.99 29.59 68.60 2.03 38.02 15 19 H -0.26 -9.96 7.11 99.48 0.71 -9.25 15 20 H -0.24 -7.86 7.11 99.48 0.71 -7.15 15 21 H -0.26 -8.79 7.11 99.48 0.71 -8.08 15 22 H 0.13 3.25 8.14 -2.39 -0.02 3.23 15 23 H 0.05 1.79 8.13 -2.39 -0.02 1.77 15 24 H 0.05 1.75 8.13 -2.39 -0.02 1.73 15 25 H 0.15 4.50 8.06 -2.91 -0.02 4.48 15 26 H 0.17 3.46 8.06 -2.91 -0.02 3.44 15 27 H 0.15 3.91 8.06 -2.91 -0.02 3.88 15 28 H 0.12 5.18 6.35 -2.91 -0.02 5.16 15 29 H 0.31 12.59 8.30 -92.71 -0.77 11.82 15 Total: -1.00 -69.93 264.22 6.37 -63.56 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 1.18 Total: 16.05 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: 3.36 Total: -19.22 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.22 Total: -36.47 kcal Atomic # 8 Polarization: -61.51 SS G_CDS: -0.42 Total: -61.93 kcal Atomic # 14 Polarization: 35.99 SS G_CDS: 2.03 Total: 38.02 kcal Total: -69.93 6.37 -63.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075624865.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.062 kcal (2) G-P(sol) polarization free energy of solvation -69.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds