Wall clock time and date at job start Mon Mar 30 2020 06:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31025 * 1 3 3 Si 1.86804 * 120.00328 * 2 1 4 4 H 1.48497 * 109.46896 * 89.99856 * 3 2 1 5 5 H 1.48494 * 109.47196 * 209.99994 * 3 2 1 6 6 H 1.48494 * 109.46944 * 330.00092 * 3 2 1 7 7 C 1.39699 * 119.99713 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99729 * 17.07188 * 7 2 1 9 9 C 1.41377 * 119.99854 * 197.07521 * 7 2 1 10 10 C 1.47280 * 127.37722 * 17.76834 * 9 7 2 11 11 C 1.34005 * 106.09434 * 179.86657 * 10 9 7 12 12 C 1.50704 * 125.14940 * 180.14057 * 11 10 9 13 13 F 1.39898 * 109.47390 * 90.28269 * 12 11 10 14 14 F 1.39896 * 109.46849 * 210.28721 * 12 11 10 15 15 F 1.39901 * 109.46473 * 330.28170 * 12 11 10 16 16 O 1.34257 * 109.70323 * 0.40564 * 11 10 9 17 17 C 1.33877 * 111.05438 * 359.72917 * 16 11 10 18 18 C 1.50700 * 126.04817 * 179.97438 * 17 16 11 19 19 C 1.53005 * 117.49971 * 8.77270 * 18 17 16 20 20 C 1.53003 * 117.49745 * 300.11110 * 18 17 16 21 21 H 0.96994 * 120.00657 * 175.24371 * 1 2 3 22 22 H 1.08002 * 126.95131 * 0.02562 * 10 9 7 23 23 H 1.08995 * 115.55056 * 154.44345 * 18 17 16 24 24 H 1.08996 * 117.50046 * 359.97438 * 19 18 17 25 25 H 1.08997 * 117.49680 * 145.02261 * 19 18 17 26 26 H 1.09007 * 117.49612 * 214.97930 * 20 18 17 27 27 H 1.08997 * 117.49980 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2444 1.6177 0.0000 4 1 2.4918 2.0463 1.4001 5 1 3.5419 1.4401 -0.7000 6 1 1.4419 2.6526 -0.7000 7 6 2.0087 -1.2099 -0.0005 8 1 1.5043 -2.1244 -0.2755 9 6 3.3757 -1.2370 0.3590 10 6 4.1282 -0.2046 1.0918 11 6 5.3814 -0.6662 1.2018 12 6 6.5148 0.0551 1.8847 13 9 6.5545 -0.3105 3.2344 14 9 7.7240 -0.2908 1.2720 15 9 6.3180 1.4364 1.7812 16 8 5.4758 -1.8659 0.6066 17 6 4.2986 -2.2410 0.0912 18 6 4.0232 -3.5245 -0.6490 19 6 5.1257 -4.5854 -0.6581 20 6 4.8204 -3.7873 -1.9282 21 1 -0.4851 -0.8370 -0.0696 22 1 3.7464 0.7334 1.4671 23 1 2.9906 -3.8721 -0.6191 24 1 6.0504 -4.3548 -0.1291 25 1 4.8184 -5.6308 -0.6347 26 1 4.3122 -4.3082 -2.7398 27 1 5.5436 -3.0317 -2.2347 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077082704.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:38 Heat of formation + Delta-G solvation = -125.427105 kcal Electronic energy + Delta-G solvation = -17936.178207 eV Core-core repulsion = 14439.243731 eV Total energy + Delta-G solvation = -3496.934476 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.86417 -47.40996 -47.34788 -41.15680 -36.41143 -34.12631 -31.74940 -30.05692 -25.66357 -25.26207 -21.96667 -21.72226 -20.91101 -19.06840 -18.49846 -18.25727 -17.96537 -17.04448 -15.59126 -14.99884 -14.69487 -14.22022 -14.15462 -13.96691 -13.80823 -13.53157 -13.52698 -13.46263 -13.00559 -12.50087 -11.85386 -11.49557 -11.14328 -11.12294 -10.92278 -10.27904 -10.11313 -9.81862 -9.65151 -9.27989 -8.59894 -7.67621 -7.27293 -4.49157 2.20777 2.64753 3.02201 3.21100 3.41503 3.52588 3.58411 3.98935 4.30380 4.43616 4.70679 4.83055 5.06901 5.27480 5.41621 5.59482 5.86023 5.99845 6.16466 6.18732 6.53247 6.54004 6.67011 6.91430 7.16745 7.57123 7.96642 8.27778 8.35384 8.77028 10.06181 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.016188 B = 0.012516 C = 0.007747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.283588 B = 2236.584482 C = 3613.444433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.045 3.955 3 Si 1.061 2.939 4 H -0.276 1.276 5 H -0.263 1.263 6 H -0.284 1.284 7 C -0.502 4.502 8 H 0.080 0.920 9 C 0.032 3.968 10 C -0.205 4.205 11 C -0.122 4.122 12 C 0.558 3.442 13 F -0.174 7.174 14 F -0.177 7.177 15 F -0.167 7.167 16 O -0.164 6.164 17 C -0.141 4.141 18 C -0.019 4.019 19 C -0.188 4.188 20 C -0.182 4.182 21 H 0.285 0.715 22 H 0.144 0.856 23 H 0.121 0.879 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.530 -1.396 0.581 8.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.173 4.173 3 Si 0.888 3.112 4 H -0.203 1.203 5 H -0.188 1.188 6 H -0.210 1.210 7 C -0.532 4.532 8 H 0.098 0.902 9 C 0.029 3.971 10 C -0.225 4.225 11 C -0.173 4.173 12 C 0.503 3.497 13 F -0.156 7.156 14 F -0.158 7.158 15 F -0.148 7.148 16 O -0.064 6.064 17 C -0.190 4.190 18 C -0.037 4.037 19 C -0.225 4.225 20 C -0.219 4.219 21 H 0.096 0.904 22 H 0.161 0.839 23 H 0.138 0.862 24 H 0.110 0.890 25 H 0.109 0.891 26 H 0.110 0.890 27 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.506 0.057 0.621 8.529 hybrid contribution 0.109 -1.489 0.170 1.502 sum 8.615 -1.431 0.791 8.768 Atomic orbital electron populations 1.70619 1.07697 1.32818 1.33880 1.26966 0.95743 1.03956 0.90660 0.83837 0.75783 0.73698 0.77912 1.20271 1.18783 1.21039 1.19767 0.92951 0.96809 1.43647 0.90192 1.19069 0.93912 0.89812 0.94296 1.22704 0.92928 1.02164 1.04726 1.20850 0.94595 0.91168 1.10717 1.17000 0.79850 0.76542 0.76278 1.93218 1.96480 1.91483 1.34371 1.93187 1.47830 1.91955 1.82854 1.93196 1.95049 1.30600 1.95992 1.83291 1.35272 1.29321 1.58517 1.21264 0.81818 1.01170 1.14718 1.19794 0.96391 0.90152 0.97386 1.22956 1.01026 0.96382 1.02151 1.23042 1.04163 1.03170 0.91510 0.90397 0.83908 0.86166 0.88958 0.89141 0.89028 0.89053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.10 13.67 55.54 0.76 -21.34 15 2 C 0.04 1.17 5.51 -17.35 -0.10 1.08 15 3 Si 1.06 23.90 24.91 -169.99 -4.24 19.67 15 4 H -0.28 -5.86 6.54 56.52 0.37 -5.49 15 5 H -0.26 -5.85 6.68 56.52 0.38 -5.47 15 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 7 C -0.50 -13.27 9.54 -37.84 -0.36 -13.63 15 8 H 0.08 2.15 7.76 -52.49 -0.41 1.74 15 9 C 0.03 0.82 5.64 -104.75 -0.59 0.23 15 10 C -0.20 -4.83 7.87 -37.40 -0.29 -5.12 15 11 C -0.12 -2.69 6.60 -35.80 -0.24 -2.92 15 12 C 0.56 10.39 3.53 36.01 0.13 10.52 15 13 F -0.17 -3.10 17.30 2.25 0.04 -3.06 15 14 F -0.18 -3.15 17.28 2.25 0.04 -3.11 15 15 F -0.17 -2.97 16.97 2.25 0.04 -2.94 15 16 O -0.16 -3.75 10.22 6.96 0.07 -3.68 15 17 C -0.14 -3.29 6.96 -34.03 -0.24 -3.53 15 18 C -0.02 -0.38 6.03 -91.77 -0.55 -0.93 15 19 C -0.19 -3.05 10.17 -26.69 -0.27 -3.32 15 20 C -0.18 -3.02 10.24 -26.69 -0.27 -3.29 15 21 H 0.28 7.39 8.73 -40.82 -0.36 7.04 15 22 H 0.14 3.23 4.45 -52.49 -0.23 2.99 15 23 H 0.12 2.30 7.84 -51.93 -0.41 1.90 15 24 H 0.09 1.55 7.98 -51.93 -0.41 1.13 15 25 H 0.09 1.24 8.14 -51.93 -0.42 0.81 15 26 H 0.09 1.31 8.14 -51.93 -0.42 0.89 15 27 H 0.09 1.57 8.14 -51.93 -0.42 1.15 15 LS Contribution 253.96 15.07 3.83 3.83 Total: -1.00 -26.48 253.96 -4.19 -30.66 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -1.94 Total: 0.89 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -2.79 Total: -20.93 kcal Atomic # 7 Polarization: -22.10 SS G_CDS: 0.76 Total: -21.34 kcal Atomic # 8 Polarization: -3.75 SS G_CDS: 0.07 Total: -3.68 kcal Atomic # 9 Polarization: -9.22 SS G_CDS: 0.12 Total: -9.11 kcal Atomic # 14 Polarization: 23.90 SS G_CDS: -4.24 Total: 19.67 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -26.48 -4.19 -30.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077082704.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.762 kcal (2) G-P(sol) polarization free energy of solvation -26.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds