Wall clock time and date at job start Mon Mar 30 2020 05:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31019 * 1 3 3 Si 1.86803 * 120.00146 * 2 1 4 4 H 1.48503 * 109.46821 * 275.54279 * 3 2 1 5 5 H 1.48501 * 109.46888 * 35.53872 * 3 2 1 6 6 H 1.48494 * 109.47165 * 155.54097 * 3 2 1 7 7 C 1.39697 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99971 * 356.74201 * 7 2 1 9 9 C 1.41385 * 120.00152 * 176.46331 * 7 2 1 10 10 C 1.47280 * 127.41604 * 319.41903 * 9 7 2 11 11 C 1.33781 * 106.50881 * 179.97438 * 10 9 7 12 12 O 1.34949 * 109.19718 * 0.02562 * 11 10 9 13 13 C 1.33715 * 111.22698 * 359.73815 * 12 11 10 14 14 C 1.50700 * 126.04703 * 180.29592 * 13 12 11 15 15 F 1.39907 * 109.46788 * 236.93241 * 14 13 12 16 16 F 1.39902 * 109.47598 * 356.93163 * 14 13 12 17 17 F 1.39902 * 109.47116 * 116.93780 * 14 13 12 18 18 C 1.51657 * 110.09484 * 180.02562 * 11 10 9 19 19 C 1.54420 * 105.02865 * 343.08789 * 18 11 10 20 20 C 1.51080 * 142.61459 * 359.91791 * 10 9 7 21 21 H 0.96998 * 120.00405 * 359.97438 * 1 2 3 22 22 H 1.08997 * 110.32821 * 224.19818 * 18 11 10 23 23 H 1.09011 * 110.41702 * 102.01972 * 18 11 10 24 24 H 1.09004 * 110.96961 * 267.42659 * 19 18 11 25 25 H 1.09004 * 111.00117 * 143.69221 * 19 18 11 26 26 H 1.09000 * 110.36525 * 315.66858 * 20 10 9 27 27 H 1.08999 * 110.36673 * 77.99336 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 2.3746 2.1140 -1.3936 5 1 1.5051 2.6160 0.8138 6 1 3.5954 1.4092 0.5797 7 6 2.0087 -1.2098 0.0005 8 1 1.4700 -2.1443 0.0541 9 6 3.4205 -1.2111 -0.0750 10 6 4.2727 -0.3477 -0.9101 11 6 5.5376 -0.7011 -0.6551 12 8 5.5450 -1.6977 0.2547 13 6 4.3025 -2.0233 0.6264 14 6 3.9258 -3.0850 1.6273 15 9 3.0663 -4.0100 1.0246 16 9 5.0802 -3.7403 2.0691 17 9 3.2808 -2.4906 2.7172 18 6 6.4907 0.1440 -1.4781 19 6 5.6168 0.7671 -2.5883 20 6 4.2201 0.7675 -1.9279 21 1 -0.4850 0.8400 0.0004 22 1 7.2697 -0.4806 -1.9151 23 1 6.9345 0.9261 -0.8618 24 1 5.6240 0.1468 -3.4847 25 1 5.9406 1.7825 -2.8167 26 1 3.4491 0.5662 -2.6717 27 1 4.0334 1.7220 -1.4356 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077090062.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:31 Heat of formation + Delta-G solvation = -127.050133 kcal Electronic energy + Delta-G solvation = -18405.760082 eV Core-core repulsion = 14908.755225 eV Total energy + Delta-G solvation = -3497.004856 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.19042 -46.77465 -46.65791 -41.24131 -36.53490 -33.85892 -31.36257 -28.36984 -27.57038 -26.33356 -23.75617 -21.20734 -19.85037 -18.98476 -17.66942 -17.56698 -17.28923 -16.59413 -15.70331 -14.92977 -14.42905 -14.14988 -13.63078 -13.52867 -13.31996 -13.16562 -12.90945 -12.89276 -12.86989 -12.52471 -12.20091 -11.57874 -11.40246 -11.17453 -10.77748 -10.75375 -10.53298 -10.07944 -9.83219 -9.18528 -8.17472 -7.51612 -6.85191 -4.63497 2.40435 2.98845 3.03800 3.14480 3.24813 3.42746 3.82781 3.98140 4.70660 4.88257 5.00025 5.10650 5.19499 5.40732 5.43338 5.70013 5.85948 5.94898 6.10462 6.28521 6.39052 6.41865 6.65281 6.96914 7.10345 7.42594 8.08194 8.31987 8.44607 8.75554 10.16347 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.019338 B = 0.013743 C = 0.008991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.542592 B = 2036.985427 C = 3113.417687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.093 3.907 3 Si 0.896 3.104 4 H -0.256 1.256 5 H -0.289 1.289 6 H -0.245 1.245 7 C -0.446 4.446 8 H 0.098 0.902 9 C 0.109 3.891 10 C -0.245 4.245 11 C -0.015 4.015 12 O -0.165 6.165 13 C -0.295 4.295 14 C 0.584 3.416 15 F -0.177 7.177 16 F -0.192 7.192 17 F -0.174 7.174 18 C -0.023 4.023 19 C -0.115 4.115 20 C -0.067 4.067 21 H 0.284 0.716 22 H 0.076 0.924 23 H 0.083 0.917 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.361 2.278 -2.467 9.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.124 4.124 3 Si 0.722 3.278 4 H -0.182 1.182 5 H -0.216 1.216 6 H -0.169 1.169 7 C -0.476 4.476 8 H 0.116 0.884 9 C 0.105 3.895 10 C -0.247 4.247 11 C -0.066 4.066 12 O -0.066 6.066 13 C -0.343 4.343 14 C 0.530 3.470 15 F -0.158 7.158 16 F -0.174 7.174 17 F -0.155 7.155 18 C -0.060 4.060 19 C -0.152 4.152 20 C -0.103 4.103 21 H 0.095 0.905 22 H 0.095 0.905 23 H 0.101 0.899 24 H 0.095 0.905 25 H 0.098 0.902 26 H 0.093 0.907 27 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.320 2.198 -2.324 8.914 hybrid contribution -0.033 0.510 0.197 0.547 sum 8.287 2.708 -2.127 8.974 Atomic orbital electron populations 1.69682 1.07589 1.29861 1.37435 1.25862 0.94748 1.00926 0.90882 0.86793 0.81057 0.80569 0.79360 1.18157 1.21569 1.16851 1.18781 0.87883 0.95724 1.45207 0.88370 1.18477 0.93320 0.88953 0.88759 1.22139 0.94530 1.03870 1.04183 1.22655 0.97641 0.92044 0.94281 1.83225 1.28927 1.44795 1.49663 1.21388 0.82561 1.15605 1.14702 1.16371 0.73570 0.78600 0.78500 1.93177 1.71447 1.67567 1.83631 1.93104 1.50591 1.83017 1.90683 1.93189 1.82311 1.83936 1.56068 1.20652 0.95439 0.95658 0.94277 1.22401 0.94761 1.00809 0.97246 1.20928 0.97210 0.95849 0.96358 0.90541 0.90536 0.89898 0.90516 0.90199 0.90731 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.26 13.94 55.54 0.77 -21.48 15 2 C 0.09 2.48 5.51 -17.35 -0.10 2.38 15 3 Si 0.90 20.33 22.98 -169.99 -3.91 16.43 15 4 H -0.26 -5.27 5.83 56.52 0.33 -4.94 15 5 H -0.29 -6.43 7.11 56.52 0.40 -6.03 15 6 H -0.24 -5.73 6.11 56.52 0.35 -5.39 15 7 C -0.45 -12.40 9.71 -37.84 -0.37 -12.77 15 8 H 0.10 2.91 7.93 -52.49 -0.42 2.49 15 9 C 0.11 2.84 5.17 -104.78 -0.54 2.30 15 10 C -0.24 -5.62 4.68 -102.33 -0.48 -6.09 15 11 C -0.02 -0.33 8.16 -35.40 -0.29 -0.61 15 12 O -0.17 -3.93 10.40 5.45 0.06 -3.87 15 13 C -0.29 -7.40 6.71 -34.06 -0.23 -7.63 15 14 C 0.58 13.55 3.28 36.01 0.12 13.66 15 15 F -0.18 -4.08 17.15 2.25 0.04 -4.04 15 16 F -0.19 -4.11 17.20 2.25 0.04 -4.07 15 17 F -0.17 -4.06 17.30 2.25 0.04 -4.02 15 18 C -0.02 -0.35 6.79 -26.67 -0.18 -0.53 15 19 C -0.11 -1.60 7.14 -25.20 -0.18 -1.78 15 20 C -0.07 -1.25 4.55 -26.91 -0.12 -1.38 15 21 H 0.28 6.99 8.30 -40.82 -0.34 6.65 15 22 H 0.08 0.97 8.14 -51.93 -0.42 0.55 15 23 H 0.08 1.10 8.14 -51.92 -0.42 0.68 15 24 H 0.08 0.97 8.14 -51.93 -0.42 0.54 15 25 H 0.08 0.87 8.14 -51.93 -0.42 0.45 15 26 H 0.07 1.40 8.13 -51.93 -0.42 0.98 15 27 H 0.07 1.31 4.46 -51.93 -0.23 1.07 15 LS Contribution 241.11 15.07 3.63 3.63 Total: -1.00 -29.08 241.11 -3.72 -32.80 By element: Atomic # 1 Polarization: -0.92 SS G_CDS: -2.02 Total: -2.95 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -2.37 Total: -12.43 kcal Atomic # 7 Polarization: -22.26 SS G_CDS: 0.77 Total: -21.48 kcal Atomic # 8 Polarization: -3.93 SS G_CDS: 0.06 Total: -3.87 kcal Atomic # 9 Polarization: -12.24 SS G_CDS: 0.12 Total: -12.13 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -3.91 Total: 16.43 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -29.08 -3.72 -32.80 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077090062.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.250 kcal (2) G-P(sol) polarization free energy of solvation -29.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds