Wall clock time and date at job start Mon Mar 30 2020 05:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31019 * 1 3 3 Si 1.86803 * 120.00146 * 2 1 4 4 H 1.48503 * 109.46821 * 275.54279 * 3 2 1 5 5 H 1.48501 * 109.46888 * 35.53872 * 3 2 1 6 6 H 1.48494 * 109.47165 * 155.54097 * 3 2 1 7 7 C 1.39697 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99971 * 356.74201 * 7 2 1 9 9 C 1.41385 * 120.00152 * 176.46331 * 7 2 1 10 10 C 1.47280 * 127.41604 * 319.41903 * 9 7 2 11 11 C 1.33781 * 106.50881 * 179.97438 * 10 9 7 12 12 O 1.34949 * 109.19718 * 0.02562 * 11 10 9 13 13 C 1.33715 * 111.22698 * 359.73815 * 12 11 10 14 14 C 1.50700 * 126.04703 * 180.29592 * 13 12 11 15 15 F 1.39907 * 109.46788 * 236.93241 * 14 13 12 16 16 F 1.39902 * 109.47598 * 356.93163 * 14 13 12 17 17 F 1.39902 * 109.47116 * 116.93780 * 14 13 12 18 18 C 1.51657 * 110.09484 * 180.02562 * 11 10 9 19 19 C 1.54420 * 105.02865 * 343.08789 * 18 11 10 20 20 C 1.51080 * 142.61459 * 359.91791 * 10 9 7 21 21 H 0.96998 * 120.00405 * 359.97438 * 1 2 3 22 22 H 1.08997 * 110.32821 * 224.19818 * 18 11 10 23 23 H 1.09011 * 110.41702 * 102.01972 * 18 11 10 24 24 H 1.09004 * 110.96961 * 267.42659 * 19 18 11 25 25 H 1.09004 * 111.00117 * 143.69221 * 19 18 11 26 26 H 1.09000 * 110.36525 * 315.66858 * 20 10 9 27 27 H 1.08999 * 110.36673 * 77.99336 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 2.3746 2.1140 -1.3936 5 1 1.5051 2.6160 0.8138 6 1 3.5954 1.4092 0.5797 7 6 2.0087 -1.2098 0.0005 8 1 1.4700 -2.1443 0.0541 9 6 3.4205 -1.2111 -0.0750 10 6 4.2727 -0.3477 -0.9101 11 6 5.5376 -0.7011 -0.6551 12 8 5.5450 -1.6977 0.2547 13 6 4.3025 -2.0233 0.6264 14 6 3.9258 -3.0850 1.6273 15 9 3.0663 -4.0100 1.0246 16 9 5.0802 -3.7403 2.0691 17 9 3.2808 -2.4906 2.7172 18 6 6.4907 0.1440 -1.4781 19 6 5.6168 0.7671 -2.5883 20 6 4.2201 0.7675 -1.9279 21 1 -0.4850 0.8400 0.0004 22 1 7.2697 -0.4806 -1.9151 23 1 6.9345 0.9261 -0.8618 24 1 5.6240 0.1468 -3.4847 25 1 5.9406 1.7825 -2.8167 26 1 3.4491 0.5662 -2.6717 27 1 4.0334 1.7220 -1.4356 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077090062.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:31 Heat of formation + Delta-G solvation = -145.404626 kcal Electronic energy + Delta-G solvation = -18406.555992 eV Core-core repulsion = 14908.755225 eV Total energy + Delta-G solvation = -3497.800767 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -51.07033 -48.62075 -48.56952 -43.00647 -37.96851 -35.82506 -33.26015 -30.03798 -28.93928 -28.21974 -25.56457 -22.70454 -21.57964 -20.74821 -19.55639 -19.46315 -19.12969 -18.42737 -17.23930 -16.68495 -16.18143 -15.74003 -15.46091 -15.38334 -15.07159 -14.99928 -14.78680 -14.74827 -14.40886 -14.14383 -13.77032 -13.36620 -12.89030 -12.72596 -12.59965 -12.17489 -11.99299 -11.90406 -11.49191 -10.95920 -10.06146 -9.24674 -8.84328 -6.72271 0.59743 1.19138 1.27816 1.35245 1.45409 1.60201 2.03499 2.13595 2.84263 2.98127 3.34769 3.51698 3.71511 4.04907 4.15137 4.31567 4.57394 4.67976 4.76321 4.89361 4.93532 5.12606 5.17242 5.31673 5.42624 5.56336 6.04267 6.28968 6.52958 6.70359 8.21892 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.019338 B = 0.013743 C = 0.008991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.542592 B = 2036.985427 C = 3113.417687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.051 3.949 3 Si 0.952 3.048 4 H -0.217 1.217 5 H -0.284 1.284 6 H -0.256 1.256 7 C -0.477 4.477 8 H 0.056 0.944 9 C 0.083 3.917 10 C -0.276 4.276 11 C -0.008 4.008 12 O -0.175 6.175 13 C -0.310 4.310 14 C 0.585 3.415 15 F -0.180 7.180 16 F -0.179 7.179 17 F -0.177 7.177 18 C -0.021 4.021 19 C -0.100 4.100 20 C -0.076 4.076 21 H 0.294 0.706 22 H 0.108 0.892 23 H 0.111 0.889 24 H 0.091 0.909 25 H 0.123 0.877 26 H 0.068 0.932 27 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.118 4.480 -3.916 12.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.162 4.162 3 Si 0.774 3.226 4 H -0.140 1.140 5 H -0.211 1.211 6 H -0.180 1.180 7 C -0.507 4.507 8 H 0.074 0.926 9 C 0.079 3.921 10 C -0.278 4.278 11 C -0.059 4.059 12 O -0.076 6.076 13 C -0.358 4.358 14 C 0.531 3.469 15 F -0.161 7.161 16 F -0.160 7.160 17 F -0.159 7.159 18 C -0.057 4.057 19 C -0.137 4.137 20 C -0.112 4.112 21 H 0.104 0.896 22 H 0.126 0.874 23 H 0.129 0.871 24 H 0.110 0.890 25 H 0.141 0.859 26 H 0.087 0.913 27 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.078 4.383 -3.790 12.502 hybrid contribution -0.835 -0.303 0.678 1.118 sum 10.243 4.080 -3.112 11.457 Atomic orbital electron populations 1.69729 1.08908 1.31308 1.38818 1.26689 0.95516 1.04010 0.89984 0.86032 0.78840 0.76266 0.81449 1.13994 1.21070 1.17993 1.18687 0.89071 0.94876 1.48097 0.92620 1.18760 0.93007 0.90741 0.89607 1.22569 0.94355 1.05414 1.05495 1.24089 0.99463 0.90104 0.92255 1.83228 1.27976 1.45877 1.50512 1.21702 0.83326 1.15708 1.15020 1.16290 0.73824 0.78522 0.78300 1.93165 1.71644 1.67584 1.83726 1.93121 1.49729 1.82696 1.90497 1.93173 1.82467 1.84063 1.56160 1.21083 0.95124 0.95597 0.93937 1.22506 0.90757 1.03656 0.96761 1.21125 1.00583 0.94147 0.95382 0.89603 0.87379 0.87120 0.89025 0.85907 0.91344 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.32 13.94 21.79 0.30 -48.02 15 2 C 0.05 2.79 5.51 85.17 0.47 3.26 15 3 Si 0.95 41.39 22.98 68.60 1.58 42.97 15 4 H -0.22 -8.00 5.83 99.48 0.58 -7.42 15 5 H -0.28 -11.93 7.11 99.48 0.71 -11.23 15 6 H -0.26 -11.45 6.11 99.48 0.61 -10.85 15 7 C -0.48 -27.83 9.71 23.40 0.23 -27.60 15 8 H 0.06 3.58 7.93 -2.91 -0.02 3.55 15 9 C 0.08 4.39 5.17 -19.96 -0.10 4.29 15 10 C -0.28 -12.22 4.68 -18.38 -0.09 -12.31 15 11 C -0.01 -0.33 8.16 24.98 0.20 -0.13 15 12 O -0.17 -8.13 10.40 -3.40 -0.04 -8.16 15 13 C -0.31 -15.74 6.71 25.85 0.17 -15.57 15 14 C 0.58 27.77 3.28 71.24 0.23 28.01 15 15 F -0.18 -8.64 17.15 44.97 0.77 -7.87 15 16 F -0.18 -7.62 17.20 44.97 0.77 -6.85 15 17 F -0.18 -8.53 17.30 44.97 0.78 -7.75 15 18 C -0.02 -0.50 6.79 30.64 0.21 -0.30 15 19 C -0.10 -2.17 7.14 31.59 0.23 -1.95 15 20 C -0.08 -2.56 4.55 30.48 0.14 -2.42 15 21 H 0.29 14.77 8.30 -92.71 -0.77 14.00 15 22 H 0.11 2.05 8.14 -2.39 -0.02 2.03 15 23 H 0.11 2.20 8.14 -2.38 -0.02 2.18 15 24 H 0.09 1.76 8.14 -2.39 -0.02 1.74 15 25 H 0.12 1.73 8.14 -2.38 -0.02 1.71 15 26 H 0.07 2.37 8.13 -2.39 -0.02 2.35 15 27 H 0.07 2.41 4.46 -2.39 -0.01 2.40 15 Total: -1.00 -66.78 241.11 6.85 -59.92 By element: Atomic # 1 Polarization: -0.52 SS G_CDS: 0.99 Total: 0.47 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: 1.69 Total: -24.71 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.30 Total: -48.02 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -0.04 Total: -8.16 kcal Atomic # 9 Polarization: -24.79 SS G_CDS: 2.32 Total: -22.47 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 1.58 Total: 42.97 kcal Total: -66.78 6.85 -59.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077090062.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.481 kcal (2) G-P(sol) polarization free energy of solvation -66.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds