Wall clock time and date at job start Mon Mar 30 2020 05:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29863 * 122.56450 * 2 1 4 4 C 1.30881 * 117.61505 * 179.97438 * 3 2 1 5 5 C 1.47456 * 125.13448 * 180.26597 * 4 3 2 6 6 C 1.39765 * 119.76065 * 359.42345 * 5 4 3 7 7 C 1.38332 * 119.03297 * 179.72828 * 6 5 4 8 8 C 1.38831 * 118.53786 * 0.53554 * 7 6 5 9 9 C 1.38426 * 119.43405 * 359.72733 * 8 7 6 10 10 N 1.31630 * 120.93372 * 359.97438 * 9 8 7 11 11 S 1.76089 * 109.73111 * 0.02562 * 4 3 2 12 12 C 1.38937 * 122.56825 * 179.97438 * 2 1 3 13 13 C 1.39715 * 126.10340 * 0.02562 * 12 2 1 14 14 H 1.07994 * 120.00352 * 359.97438 * 13 12 2 15 15 C 1.40205 * 119.99656 * 179.97438 * 13 12 2 16 16 N 1.30779 * 119.99891 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00171 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46545 * 90.00256 * 17 15 13 19 19 H 1.48495 * 109.47420 * 210.00040 * 17 15 13 20 20 H 1.48497 * 109.46916 * 330.00551 * 17 15 13 21 21 H 1.08999 * 109.47245 * 269.99973 * 1 2 3 22 22 H 1.09001 * 109.47193 * 29.99548 * 1 2 3 23 23 H 1.08997 * 109.47069 * 149.99855 * 1 2 3 24 24 H 1.07997 * 120.48290 * 359.97438 * 6 5 4 25 25 H 1.08000 * 120.72638 * 180.26105 * 7 6 5 26 26 H 1.08004 * 120.28682 * 179.70740 * 8 7 6 27 27 H 1.08002 * 119.53258 * 179.97438 * 9 8 7 28 28 H 0.97007 * 119.99782 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2060 1.0945 0.0000 4 6 3.5099 0.9815 0.0005 5 6 4.4594 2.1097 0.0062 6 6 3.9779 3.4218 -0.0006 7 6 4.8819 4.4688 0.0106 8 6 6.2385 4.1737 0.0169 9 6 6.6469 2.8510 0.0175 10 7 5.7678 1.8714 0.0128 11 16 3.9592 -0.7211 0.0004 12 6 2.2549 -1.1709 0.0005 13 6 1.7467 -2.4724 0.0006 14 1 0.6792 -2.6352 0.0007 15 6 2.6229 -3.5669 0.0006 16 7 3.9157 -3.3697 0.0011 17 14 1.9436 -5.3071 0.0014 18 1 1.7632 -5.7686 -1.3985 19 1 2.8933 -6.2089 0.7014 20 1 0.6344 -5.3270 0.7019 21 1 -0.3634 0.0000 1.0276 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3633 -0.8899 -0.5138 24 1 2.9154 3.6154 -0.0105 25 1 4.5399 5.4932 0.0099 26 1 6.9689 4.9692 0.0209 27 1 7.7018 2.6196 0.0220 28 1 4.5219 -4.1270 0.0014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082419626.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:33 Heat of formation + Delta-G solvation = 41.926631 kcal Electronic energy + Delta-G solvation = -14512.247996 eV Core-core repulsion = 12039.472884 eV Total energy + Delta-G solvation = -2472.775111 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.21794 -37.55656 -34.52408 -31.89862 -31.49835 -29.65134 -28.11338 -24.74500 -23.59775 -22.69709 -20.91334 -18.68063 -17.44880 -16.28673 -15.92336 -15.28343 -14.83071 -14.54582 -13.64132 -13.62733 -12.89284 -12.83409 -12.39913 -12.12565 -11.94050 -11.72902 -11.63083 -11.21348 -11.02402 -10.94443 -10.57751 -10.05375 -9.30070 -9.29381 -8.80043 -8.69051 -8.03642 -7.78369 -7.22854 -6.97745 -4.73208 1.49134 1.93822 2.47685 2.77454 2.84155 2.96747 3.34900 3.48606 3.92712 3.99557 4.61133 4.88991 4.97815 5.33027 5.52631 5.63653 5.87376 6.12128 6.36201 6.40802 6.48425 6.57448 6.66869 6.72966 6.74945 6.91333 7.10625 7.38468 7.50759 7.71486 8.06926 8.12823 8.75883 9.49217 9.59467 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.038060 B = 0.006608 C = 0.005648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.496696 B = 4236.023123 C = 4956.365687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C -0.118 4.118 3 N -0.401 5.401 4 C -0.167 4.167 5 C 0.266 3.734 6 C -0.175 4.175 7 C -0.074 4.074 8 C -0.225 4.225 9 C 0.110 3.890 10 N -0.501 5.501 11 S 0.141 5.859 12 C -0.007 4.007 13 C -0.334 4.334 14 H 0.106 0.894 15 C 0.042 3.958 16 N -0.747 5.747 17 Si 0.941 3.059 18 H -0.261 1.261 19 H -0.269 1.269 20 H -0.254 1.254 21 H 0.041 0.959 22 H 0.046 0.954 23 H 0.054 0.946 24 H 0.133 0.867 25 H 0.122 0.878 26 H 0.121 0.879 27 H 0.146 0.854 28 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.843 2.288 -0.037 2.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.262 4.262 3 N -0.114 5.114 4 C -0.425 4.425 5 C 0.131 3.869 6 C -0.197 4.197 7 C -0.099 4.099 8 C -0.246 4.246 9 C -0.049 4.049 10 N -0.213 5.213 11 S 0.396 5.604 12 C -0.132 4.132 13 C -0.372 4.372 14 H 0.124 0.876 15 C -0.184 4.184 16 N -0.372 5.372 17 Si 0.764 3.236 18 H -0.186 1.186 19 H -0.194 1.194 20 H -0.178 1.178 21 H 0.060 0.940 22 H 0.065 0.935 23 H 0.073 0.927 24 H 0.151 0.849 25 H 0.140 0.860 26 H 0.139 0.861 27 H 0.163 0.837 28 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.271 1.493 -0.033 2.718 hybrid contribution -1.267 0.240 0.012 1.289 sum 1.004 1.732 -0.021 2.002 Atomic orbital electron populations 1.19753 0.89926 1.00283 0.99751 1.19947 0.95831 0.86224 1.24213 1.65117 1.05054 1.32930 1.08294 1.23980 0.91004 0.96468 1.31017 1.18658 0.88303 0.90070 0.89903 1.21999 1.00983 0.92542 1.04226 1.21352 0.93231 0.98826 0.96517 1.21861 0.96292 0.97841 1.08638 1.22526 0.98763 0.88560 0.95088 1.67680 1.02060 1.36377 1.15142 1.85201 1.04906 0.96611 1.73720 1.23367 0.95700 0.97140 0.97007 1.19426 0.96004 0.88488 1.33317 0.87630 1.26447 0.94565 1.04045 0.93299 1.69000 1.03634 1.35948 1.28666 0.85698 0.80134 0.77860 0.79957 1.18595 1.19377 1.17753 0.94009 0.93510 0.92737 0.84940 0.85960 0.86114 0.83704 0.88302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.78 10.02 36.01 0.36 -0.42 15 2 C -0.12 -3.00 6.84 -83.17 -0.57 -3.57 15 3 N -0.40 -10.50 9.99 -6.65 -0.07 -10.57 15 4 C -0.17 -4.38 7.37 -14.20 -0.10 -4.48 15 5 C 0.27 6.29 6.75 -83.04 -0.56 5.73 15 6 C -0.17 -3.57 9.72 -38.98 -0.38 -3.95 15 7 C -0.07 -1.22 10.16 -39.33 -0.40 -1.62 15 8 C -0.23 -3.53 10.11 -39.29 -0.40 -3.93 15 9 C 0.11 1.95 11.18 -17.57 -0.20 1.76 15 10 N -0.50 -11.19 10.09 -9.85 -0.10 -11.29 15 11 S 0.14 3.70 20.21 -107.50 -2.17 1.53 15 12 C -0.01 -0.19 6.24 -38.77 -0.24 -0.43 15 13 C -0.33 -7.89 8.89 -38.29 -0.34 -8.23 15 14 H 0.11 2.27 6.87 -52.49 -0.36 1.91 15 15 C 0.04 0.91 5.50 -17.26 -0.09 0.82 15 16 N -0.75 -17.26 10.73 55.56 0.60 -16.67 15 17 Si 0.94 16.07 29.56 -169.99 -5.03 11.04 15 18 H -0.26 -4.41 7.11 56.52 0.40 -4.01 15 19 H -0.27 -4.51 7.11 56.52 0.40 -4.10 15 20 H -0.25 -4.24 7.11 56.52 0.40 -3.84 15 21 H 0.04 0.81 8.14 -51.93 -0.42 0.39 15 22 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 23 H 0.05 1.04 7.07 -51.93 -0.37 0.67 15 24 H 0.13 2.69 7.80 -52.49 -0.41 2.28 15 25 H 0.12 1.60 8.06 -52.49 -0.42 1.18 15 26 H 0.12 1.46 8.06 -52.48 -0.42 1.04 15 27 H 0.15 2.06 8.06 -52.49 -0.42 1.64 15 28 H 0.30 6.22 8.30 -40.82 -0.34 5.88 15 LS Contribution 265.17 15.07 4.00 4.00 Total: -1.00 -28.68 265.17 -8.08 -36.76 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -2.38 Total: 3.52 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -2.92 Total: -18.33 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.43 Total: -38.52 kcal Atomic # 14 Polarization: 16.07 SS G_CDS: -5.03 Total: 11.04 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -2.17 Total: 1.53 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -28.68 -8.08 -36.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082419626.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.690 kcal (2) G-P(sol) polarization free energy of solvation -28.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds