Wall clock time and date at job start Mon Mar 30 2020 05:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29863 * 122.56450 * 2 1 4 4 C 1.30881 * 117.61505 * 179.97438 * 3 2 1 5 5 C 1.47456 * 125.13448 * 180.26597 * 4 3 2 6 6 C 1.39765 * 119.76065 * 359.42345 * 5 4 3 7 7 C 1.38332 * 119.03297 * 179.72828 * 6 5 4 8 8 C 1.38831 * 118.53786 * 0.53554 * 7 6 5 9 9 C 1.38426 * 119.43405 * 359.72733 * 8 7 6 10 10 N 1.31630 * 120.93372 * 359.97438 * 9 8 7 11 11 S 1.76089 * 109.73111 * 0.02562 * 4 3 2 12 12 C 1.38937 * 122.56825 * 179.97438 * 2 1 3 13 13 C 1.39715 * 126.10340 * 0.02562 * 12 2 1 14 14 H 1.07994 * 120.00352 * 359.97438 * 13 12 2 15 15 C 1.40205 * 119.99656 * 179.97438 * 13 12 2 16 16 N 1.30779 * 119.99891 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00171 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46545 * 90.00256 * 17 15 13 19 19 H 1.48495 * 109.47420 * 210.00040 * 17 15 13 20 20 H 1.48497 * 109.46916 * 330.00551 * 17 15 13 21 21 H 1.08999 * 109.47245 * 269.99973 * 1 2 3 22 22 H 1.09001 * 109.47193 * 29.99548 * 1 2 3 23 23 H 1.08997 * 109.47069 * 149.99855 * 1 2 3 24 24 H 1.07997 * 120.48290 * 359.97438 * 6 5 4 25 25 H 1.08000 * 120.72638 * 180.26105 * 7 6 5 26 26 H 1.08004 * 120.28682 * 179.70740 * 8 7 6 27 27 H 1.08002 * 119.53258 * 179.97438 * 9 8 7 28 28 H 0.97007 * 119.99782 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2060 1.0945 0.0000 4 6 3.5099 0.9815 0.0005 5 6 4.4594 2.1097 0.0062 6 6 3.9779 3.4218 -0.0006 7 6 4.8819 4.4688 0.0106 8 6 6.2385 4.1737 0.0169 9 6 6.6469 2.8510 0.0175 10 7 5.7678 1.8714 0.0128 11 16 3.9592 -0.7211 0.0004 12 6 2.2549 -1.1709 0.0005 13 6 1.7467 -2.4724 0.0006 14 1 0.6792 -2.6352 0.0007 15 6 2.6229 -3.5669 0.0006 16 7 3.9157 -3.3697 0.0011 17 14 1.9436 -5.3071 0.0014 18 1 1.7632 -5.7686 -1.3985 19 1 2.8933 -6.2089 0.7014 20 1 0.6344 -5.3270 0.7019 21 1 -0.3634 0.0000 1.0276 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3633 -0.8899 -0.5138 24 1 2.9154 3.6154 -0.0105 25 1 4.5399 5.4932 0.0099 26 1 6.9689 4.9692 0.0209 27 1 7.7018 2.6196 0.0220 28 1 4.5219 -4.1270 0.0014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082419626.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:33 Heat of formation + Delta-G solvation = 24.275333 kcal Electronic energy + Delta-G solvation = -14513.013413 eV Core-core repulsion = 12039.472884 eV Total energy + Delta-G solvation = -2473.540529 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.72529 -39.36462 -36.28268 -33.40138 -33.09585 -31.31039 -29.84952 -26.40419 -25.34987 -24.15536 -22.54650 -20.47064 -19.19027 -17.86342 -17.64798 -16.72429 -16.46459 -16.03043 -15.36696 -15.17064 -14.50632 -14.37000 -13.85265 -13.80765 -13.66639 -13.28167 -13.23710 -12.85222 -12.55853 -12.45754 -12.02111 -11.61570 -11.20089 -10.74886 -10.34803 -10.31370 -9.87940 -9.61929 -8.95775 -8.86949 -6.56415 -0.09498 0.51072 0.84316 1.35691 1.47366 1.54064 1.57704 1.95315 2.13509 2.29981 2.92382 3.26762 3.36460 4.08485 4.13340 4.36083 4.39573 4.55860 4.72399 4.79997 4.91817 5.00875 5.04606 5.13491 5.31607 5.38838 5.43890 5.66419 5.93046 5.98874 6.26274 6.33333 7.24983 7.71274 7.83664 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.038060 B = 0.006608 C = 0.005648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.496696 B = 4236.023123 C = 4956.365687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 C -0.155 4.155 3 N -0.415 5.415 4 C -0.188 4.188 5 C 0.225 3.775 6 C -0.189 4.189 7 C -0.064 4.064 8 C -0.198 4.198 9 C 0.095 3.905 10 N -0.535 5.535 11 S 0.088 5.912 12 C -0.032 4.032 13 C -0.345 4.345 14 H 0.126 0.874 15 C 0.003 3.997 16 N -0.775 5.775 17 Si 1.020 2.980 18 H -0.254 1.254 19 H -0.262 1.262 20 H -0.243 1.243 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.068 0.932 24 H 0.123 0.877 25 H 0.166 0.834 26 H 0.173 0.827 27 H 0.179 0.821 28 H 0.315 0.685 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.176 2.714 -0.018 2.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.298 4.298 3 N -0.128 5.128 4 C -0.446 4.446 5 C 0.089 3.911 6 C -0.212 4.212 7 C -0.090 4.090 8 C -0.218 4.218 9 C -0.063 4.063 10 N -0.247 5.247 11 S 0.342 5.658 12 C -0.156 4.156 13 C -0.382 4.382 14 H 0.144 0.856 15 C -0.219 4.219 16 N -0.399 5.399 17 Si 0.837 3.163 18 H -0.179 1.179 19 H -0.186 1.186 20 H -0.166 1.166 21 H 0.069 0.931 22 H 0.072 0.928 23 H 0.087 0.913 24 H 0.141 0.859 25 H 0.184 0.816 26 H 0.190 0.810 27 H 0.196 0.804 28 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.598 1.945 -0.013 3.245 hybrid contribution -1.183 0.225 0.005 1.204 sum 1.415 2.171 -0.008 2.591 Atomic orbital electron populations 1.19762 0.87211 1.01267 1.00631 1.20618 0.97782 0.86029 1.25348 1.65158 1.05288 1.33382 1.09019 1.24491 0.91566 0.96845 1.31728 1.18712 0.88738 0.90541 0.93060 1.22038 1.01414 0.92529 1.05207 1.21845 0.93099 0.99727 0.94305 1.22422 0.96866 0.98135 1.04347 1.23253 0.99668 0.89112 0.94295 1.67604 1.02146 1.38850 1.16113 1.85047 1.06841 0.98380 1.75524 1.23705 0.95052 0.98489 0.98399 1.19956 0.97421 0.88341 1.32495 0.85642 1.27606 0.94409 1.08172 0.91745 1.69073 1.05185 1.37846 1.27830 0.84577 0.79763 0.71673 0.80289 1.17858 1.18644 1.16575 0.93061 0.92830 0.91339 0.85925 0.81604 0.80995 0.80361 0.87200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.23 10.02 71.24 0.71 -0.52 15 2 C -0.16 -8.16 6.84 43.02 0.29 -7.87 15 3 N -0.42 -22.86 9.99 -174.96 -1.75 -24.61 15 4 C -0.19 -10.40 7.37 87.27 0.64 -9.75 15 5 C 0.22 10.98 6.75 41.77 0.28 11.26 15 6 C -0.19 -7.75 9.72 22.66 0.22 -7.53 15 7 C -0.06 -1.94 10.16 22.43 0.23 -1.71 15 8 C -0.20 -5.37 10.11 22.46 0.23 -5.14 15 9 C 0.10 3.20 11.18 84.77 0.95 4.14 15 10 N -0.54 -24.25 10.09 -185.08 -1.87 -26.12 15 11 S 0.09 4.91 20.21 -56.49 -1.14 3.76 15 12 C -0.03 -1.72 6.24 22.79 0.14 -1.58 15 13 C -0.34 -16.44 8.89 23.11 0.21 -16.24 15 14 H 0.13 5.31 6.87 -2.91 -0.02 5.29 15 15 C 0.00 0.13 5.50 85.33 0.47 0.60 15 16 N -0.77 -36.43 10.73 21.88 0.23 -36.19 15 17 Si 1.02 31.57 29.56 68.60 2.03 33.60 15 18 H -0.25 -7.59 7.11 99.48 0.71 -6.89 15 19 H -0.26 -7.78 7.11 99.48 0.71 -7.08 15 20 H -0.24 -7.07 7.11 99.48 0.71 -6.36 15 21 H 0.05 1.99 8.14 -2.39 -0.02 1.97 15 22 H 0.05 2.10 8.14 -2.39 -0.02 2.08 15 23 H 0.07 2.59 7.07 -2.39 -0.02 2.58 15 24 H 0.12 5.12 7.80 -2.91 -0.02 5.10 15 25 H 0.17 3.52 8.06 -2.91 -0.02 3.50 15 26 H 0.17 2.98 8.06 -2.91 -0.02 2.96 15 27 H 0.18 4.55 8.06 -2.91 -0.02 4.53 15 28 H 0.31 12.99 8.30 -92.70 -0.77 12.22 15 Total: -1.00 -67.05 265.17 3.06 -63.99 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 1.18 Total: 19.90 kcal Atomic # 6 Polarization: -38.70 SS G_CDS: 4.37 Total: -34.33 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -3.38 Total: -86.92 kcal Atomic # 14 Polarization: 31.57 SS G_CDS: 2.03 Total: 33.60 kcal Atomic # 16 Polarization: 4.91 SS G_CDS: -1.14 Total: 3.76 kcal Total: -67.05 3.06 -63.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082419626.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.263 kcal (2) G-P(sol) polarization free energy of solvation -67.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds