Wall clock time and date at job start Mon Mar 30 2020 05:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29872 * 122.56724 * 2 1 4 4 C 1.30878 * 117.61118 * 180.20844 * 3 2 1 5 5 C 1.47469 * 125.13251 * 179.80229 * 4 3 2 6 6 C 1.40218 * 120.95014 * 359.69900 * 5 4 3 7 7 C 1.37899 * 118.96782 * 180.02562 * 6 5 4 8 8 N 1.31954 * 120.92510 * 0.02562 * 7 6 5 9 9 C 1.31953 * 122.11858 * 359.97438 * 8 7 6 10 10 C 1.37901 * 120.92577 * 359.97438 * 9 8 7 11 11 S 1.76085 * 109.73405 * 359.53533 * 4 3 2 12 12 C 1.38931 * 122.56496 * 179.69873 * 2 1 3 13 13 C 1.39714 * 126.10917 * 359.97438 * 12 2 1 14 14 H 1.07997 * 120.00014 * 0.02562 * 13 12 2 15 15 C 1.40217 * 119.99845 * 180.02562 * 13 12 2 16 16 N 1.30763 * 120.00074 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99560 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47472 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47214 * 119.99961 * 17 15 13 20 20 H 1.48503 * 109.47089 * 239.99432 * 17 15 13 21 21 H 1.09005 * 109.47430 * 270.29973 * 1 2 3 22 22 H 1.08999 * 109.46997 * 30.29480 * 1 2 3 23 23 H 1.08999 * 109.47557 * 150.29731 * 1 2 3 24 24 H 1.08004 * 120.51795 * 359.97438 * 6 5 4 25 25 H 1.07998 * 119.54109 * 179.97438 * 7 6 5 26 26 H 1.07997 * 119.54086 * 179.97438 * 9 8 7 27 27 H 1.07998 * 120.51981 * 180.02562 * 10 9 8 28 28 H 0.96997 * 119.99840 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2060 1.0945 0.0000 4 6 3.5099 0.9814 -0.0042 5 6 4.4596 2.1097 -0.0091 6 6 4.0039 3.4357 -0.0158 7 6 4.9279 4.4594 -0.0207 8 7 6.2226 4.2043 -0.0197 9 6 6.6949 2.9722 -0.0134 10 6 5.8440 1.8871 -0.0071 11 16 3.9591 -0.7211 0.0045 12 6 2.2548 -1.1709 0.0062 13 6 1.7467 -2.4723 0.0135 14 1 0.6790 -2.6352 0.0144 15 6 2.6229 -3.5670 0.0197 16 7 3.9156 -3.3697 0.0182 17 14 1.9435 -5.3070 0.0303 18 1 0.4592 -5.2589 0.0311 19 1 2.4151 -6.0299 -1.1781 20 1 2.4160 -6.0155 1.2468 21 1 -0.3634 0.0054 1.0277 22 1 -0.3633 0.8873 -0.5184 23 1 -0.3634 -0.8926 -0.5092 24 1 2.9458 3.6521 -0.0180 25 1 4.5872 5.4842 -0.0264 26 1 7.7628 2.8113 -0.0132 27 1 6.2377 0.8814 -0.0016 28 1 4.5217 -4.1270 0.0229 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082419669.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:38 Heat of formation + Delta-G solvation = 38.491348 kcal Electronic energy + Delta-G solvation = -14504.095812 eV Core-core repulsion = 12031.171736 eV Total energy + Delta-G solvation = -2472.924076 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.22198 -37.68048 -34.68382 -32.43343 -30.56997 -30.03871 -28.23017 -24.84126 -23.71635 -22.66958 -20.93408 -18.80978 -17.54517 -16.31945 -16.00676 -15.01451 -14.93411 -14.70941 -13.65539 -13.58404 -13.05662 -13.03186 -12.61949 -12.24252 -11.98231 -11.82963 -11.52159 -11.40765 -11.09111 -10.93885 -10.60921 -10.21571 -9.51339 -9.19814 -8.89238 -8.55455 -8.17045 -7.95032 -7.37340 -7.14514 -4.84760 1.52481 1.80929 2.44807 2.70168 2.78840 2.92120 3.16806 3.38710 3.70656 3.97916 4.52874 4.85756 5.01016 5.30078 5.56358 5.84981 5.88786 6.12459 6.29957 6.33721 6.40208 6.46066 6.59501 6.63034 6.85622 6.98864 7.13239 7.34302 7.40645 7.61959 7.94737 8.05274 8.60056 9.36118 9.50424 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.037959 B = 0.006537 C = 0.005594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.462154 B = 4282.163756 C = 5004.481305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C -0.121 4.121 3 N -0.397 5.397 4 C -0.177 4.177 5 C 0.108 3.892 6 C -0.181 4.181 7 C 0.095 3.905 8 N -0.523 5.523 9 C 0.100 3.900 10 C -0.200 4.200 11 S 0.103 5.897 12 C 0.005 3.995 13 C -0.332 4.332 14 H 0.108 0.892 15 C 0.042 3.958 16 N -0.747 5.747 17 Si 0.942 3.058 18 H -0.252 1.252 19 H -0.265 1.265 20 H -0.265 1.265 21 H 0.042 0.958 22 H 0.047 0.953 23 H 0.054 0.946 24 H 0.131 0.869 25 H 0.144 0.856 26 H 0.146 0.854 27 H 0.126 0.874 28 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.069 -0.968 -0.044 0.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.264 4.264 3 N -0.109 5.109 4 C -0.433 4.433 5 C 0.097 3.903 6 C -0.204 4.204 7 C -0.060 4.060 8 N -0.234 5.234 9 C -0.055 4.055 10 C -0.222 4.222 11 S 0.356 5.644 12 C -0.119 4.119 13 C -0.370 4.370 14 H 0.126 0.874 15 C -0.183 4.183 16 N -0.372 5.372 17 Si 0.764 3.236 18 H -0.175 1.175 19 H -0.189 1.189 20 H -0.189 1.189 21 H 0.060 0.940 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.149 0.851 25 H 0.162 0.838 26 H 0.163 0.837 27 H 0.144 0.856 28 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.777 -0.207 -0.042 1.790 hybrid contribution -1.669 -1.574 0.026 2.295 sum 0.108 -1.781 -0.016 1.785 Atomic orbital electron populations 1.19761 0.89826 1.00372 0.99827 1.19988 0.95960 0.86175 1.24320 1.65165 1.05249 1.32750 1.07686 1.24365 0.91576 0.96383 1.30999 1.18229 0.91176 0.91195 0.89723 1.22109 1.01190 0.92393 1.04704 1.22428 0.88519 0.98852 0.96216 1.67524 1.16284 1.23512 1.16127 1.22346 0.99471 0.87694 0.96035 1.22034 0.93149 1.00335 1.06652 1.84857 1.06910 0.97410 1.75179 1.23223 0.94565 0.97189 0.96943 1.19519 0.96185 0.88444 1.32860 0.87373 1.26467 0.94554 1.04219 0.93071 1.68968 1.03715 1.35991 1.28541 0.85634 0.80742 0.77831 0.79383 1.17528 1.18946 1.18950 0.93951 0.93419 0.92703 0.85085 0.83820 0.83713 0.85558 0.88252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.78 10.02 36.00 0.36 -0.42 15 2 C -0.12 -2.98 6.84 -83.17 -0.57 -3.55 15 3 N -0.40 -10.11 10.11 -6.65 -0.07 -10.17 15 4 C -0.18 -4.37 7.35 -14.20 -0.10 -4.48 15 5 C 0.11 2.38 5.91 -104.65 -0.62 1.77 15 6 C -0.18 -3.64 9.78 -38.96 -0.38 -4.03 15 7 C 0.10 1.70 11.17 -17.62 -0.20 1.50 15 8 N -0.52 -9.73 10.34 -13.37 -0.14 -9.86 15 9 C 0.10 1.78 11.17 -17.62 -0.20 1.58 15 10 C -0.20 -3.95 9.69 -38.96 -0.38 -4.32 15 11 S 0.10 2.51 19.50 -107.50 -2.10 0.41 15 12 C 0.01 0.13 6.24 -38.77 -0.24 -0.11 15 13 C -0.33 -7.57 8.89 -38.29 -0.34 -7.91 15 14 H 0.11 2.25 6.87 -52.49 -0.36 1.89 15 15 C 0.04 0.89 5.50 -17.26 -0.09 0.79 15 16 N -0.75 -16.38 10.73 55.56 0.60 -15.79 15 17 Si 0.94 15.41 29.56 -169.99 -5.03 10.39 15 18 H -0.25 -4.03 7.11 56.52 0.40 -3.63 15 19 H -0.26 -4.28 7.11 56.52 0.40 -3.88 15 20 H -0.26 -4.29 7.11 56.52 0.40 -3.89 15 21 H 0.04 0.80 8.14 -51.93 -0.42 0.38 15 22 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 23 H 0.05 1.02 7.07 -51.93 -0.37 0.65 15 24 H 0.13 2.60 7.90 -52.48 -0.41 2.19 15 25 H 0.14 2.07 8.06 -52.49 -0.42 1.65 15 26 H 0.15 2.06 8.06 -52.49 -0.42 1.64 15 27 H 0.13 2.40 7.40 -52.49 -0.39 2.01 15 28 H 0.30 5.87 8.29 -40.82 -0.34 5.53 15 LS Contribution 264.05 15.07 3.98 3.98 Total: -1.00 -27.30 264.05 -7.87 -35.17 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -2.36 Total: 5.04 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -2.76 Total: -19.16 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.39 Total: -35.82 kcal Atomic # 14 Polarization: 15.41 SS G_CDS: -5.03 Total: 10.39 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -2.10 Total: 0.41 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -27.30 -7.87 -35.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082419669.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.660 kcal (2) G-P(sol) polarization free energy of solvation -27.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds