Wall clock time and date at job start Mon Mar 30 2020 05:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29872 * 122.56724 * 2 1 4 4 C 1.30878 * 117.61118 * 180.20844 * 3 2 1 5 5 C 1.47469 * 125.13251 * 179.80229 * 4 3 2 6 6 C 1.40218 * 120.95014 * 359.69900 * 5 4 3 7 7 C 1.37899 * 118.96782 * 180.02562 * 6 5 4 8 8 N 1.31954 * 120.92510 * 0.02562 * 7 6 5 9 9 C 1.31953 * 122.11858 * 359.97438 * 8 7 6 10 10 C 1.37901 * 120.92577 * 359.97438 * 9 8 7 11 11 S 1.76085 * 109.73405 * 359.53533 * 4 3 2 12 12 C 1.38931 * 122.56496 * 179.69873 * 2 1 3 13 13 C 1.39714 * 126.10917 * 359.97438 * 12 2 1 14 14 H 1.07997 * 120.00014 * 0.02562 * 13 12 2 15 15 C 1.40217 * 119.99845 * 180.02562 * 13 12 2 16 16 N 1.30763 * 120.00074 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99560 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47472 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47214 * 119.99961 * 17 15 13 20 20 H 1.48503 * 109.47089 * 239.99432 * 17 15 13 21 21 H 1.09005 * 109.47430 * 270.29973 * 1 2 3 22 22 H 1.08999 * 109.46997 * 30.29480 * 1 2 3 23 23 H 1.08999 * 109.47557 * 150.29731 * 1 2 3 24 24 H 1.08004 * 120.51795 * 359.97438 * 6 5 4 25 25 H 1.07998 * 119.54109 * 179.97438 * 7 6 5 26 26 H 1.07997 * 119.54086 * 179.97438 * 9 8 7 27 27 H 1.07998 * 120.51981 * 180.02562 * 10 9 8 28 28 H 0.96997 * 119.99840 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2060 1.0945 0.0000 4 6 3.5099 0.9814 -0.0042 5 6 4.4596 2.1097 -0.0091 6 6 4.0039 3.4357 -0.0158 7 6 4.9279 4.4594 -0.0207 8 7 6.2226 4.2043 -0.0197 9 6 6.6949 2.9722 -0.0134 10 6 5.8440 1.8871 -0.0071 11 16 3.9591 -0.7211 0.0045 12 6 2.2548 -1.1709 0.0062 13 6 1.7467 -2.4723 0.0135 14 1 0.6790 -2.6352 0.0144 15 6 2.6229 -3.5670 0.0197 16 7 3.9156 -3.3697 0.0182 17 14 1.9435 -5.3070 0.0303 18 1 0.4592 -5.2589 0.0311 19 1 2.4151 -6.0299 -1.1781 20 1 2.4160 -6.0155 1.2468 21 1 -0.3634 0.0054 1.0277 22 1 -0.3633 0.8873 -0.5184 23 1 -0.3634 -0.8926 -0.5092 24 1 2.9458 3.6521 -0.0180 25 1 4.5872 5.4842 -0.0264 26 1 7.7628 2.8113 -0.0132 27 1 6.2377 0.8814 -0.0016 28 1 4.5217 -4.1270 0.0229 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082419669.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:38 Heat of formation + Delta-G solvation = 22.971148 kcal Electronic energy + Delta-G solvation = -14504.768818 eV Core-core repulsion = 12031.171736 eV Total energy + Delta-G solvation = -2473.597083 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.73799 -39.43558 -36.37323 -34.03141 -32.06676 -31.72340 -29.91893 -26.48926 -25.42907 -24.17056 -22.55920 -20.53464 -19.24723 -17.92592 -17.67684 -16.59527 -16.46287 -16.18481 -15.29988 -15.18033 -14.58023 -14.51629 -14.22034 -13.84332 -13.70151 -13.28874 -13.17623 -13.00985 -12.65459 -12.40493 -11.98827 -11.72092 -11.32853 -10.83014 -10.40284 -10.02484 -9.97780 -9.75868 -9.03463 -8.96931 -6.61406 -0.12510 0.32780 0.86113 1.34518 1.37418 1.53562 1.57205 1.82973 2.08613 2.31428 2.89295 3.18505 3.65317 3.71907 4.13620 4.31486 4.36227 4.52809 4.69269 4.76653 4.79280 4.98883 5.00758 5.03254 5.22607 5.36722 5.56371 5.63524 5.88355 5.90425 6.21701 6.30208 7.12373 7.68486 7.77605 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.037959 B = 0.006537 C = 0.005594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.462154 B = 4282.163756 C = 5004.481305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 C -0.155 4.155 3 N -0.416 5.416 4 C -0.199 4.199 5 C 0.077 3.923 6 C -0.193 4.193 7 C 0.106 3.894 8 N -0.526 5.526 9 C 0.109 3.891 10 C -0.208 4.208 11 S 0.076 5.924 12 C -0.025 4.025 13 C -0.340 4.340 14 H 0.126 0.874 15 C 0.006 3.994 16 N -0.770 5.770 17 Si 1.019 2.981 18 H -0.242 1.242 19 H -0.259 1.259 20 H -0.259 1.259 21 H 0.050 0.950 22 H 0.052 0.948 23 H 0.068 0.932 24 H 0.126 0.874 25 H 0.182 0.818 26 H 0.184 0.816 27 H 0.127 0.873 28 H 0.317 0.683 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.151 -1.699 -0.045 1.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.298 4.298 3 N -0.128 5.128 4 C -0.456 4.456 5 C 0.066 3.934 6 C -0.215 4.215 7 C -0.049 4.049 8 N -0.237 5.237 9 C -0.046 4.046 10 C -0.229 4.229 11 S 0.329 5.671 12 C -0.149 4.149 13 C -0.377 4.377 14 H 0.144 0.856 15 C -0.217 4.217 16 N -0.395 5.395 17 Si 0.835 3.165 18 H -0.165 1.165 19 H -0.183 1.183 20 H -0.184 1.184 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.087 0.913 24 H 0.144 0.856 25 H 0.199 0.801 26 H 0.201 0.799 27 H 0.144 0.856 28 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.866 -0.906 -0.042 2.075 hybrid contribution -1.604 -1.347 0.026 2.094 sum 0.262 -2.253 -0.016 2.268 Atomic orbital electron populations 1.19774 0.87399 1.01268 1.00632 1.20618 0.97793 0.86078 1.25300 1.65204 1.05749 1.33353 1.08502 1.24805 0.91937 0.97058 1.31812 1.18496 0.91962 0.91458 0.91463 1.22180 1.01528 0.92280 1.05542 1.22944 0.87916 0.99951 0.94110 1.67678 1.16420 1.23672 1.15952 1.22903 1.00997 0.86755 0.93944 1.22153 0.92524 1.01211 1.07050 1.84650 1.07835 0.98153 1.76435 1.23603 0.94552 0.98389 0.98349 1.20026 0.97522 0.88351 1.31827 0.85643 1.27553 0.94446 1.08046 0.91690 1.68995 1.05115 1.37949 1.27429 0.84548 0.80442 0.71924 0.79541 1.16490 1.18326 1.18359 0.93077 0.92926 0.91315 0.85628 0.80078 0.79901 0.85551 0.86965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.28 10.02 71.23 0.71 -0.56 15 2 C -0.16 -7.83 6.84 43.01 0.29 -7.53 15 3 N -0.42 -21.95 10.11 -174.96 -1.77 -23.72 15 4 C -0.20 -10.25 7.35 87.27 0.64 -9.61 15 5 C 0.08 3.48 5.91 -19.88 -0.12 3.37 15 6 C -0.19 -7.76 9.78 22.67 0.22 -7.54 15 7 C 0.11 3.60 11.17 84.59 0.94 4.54 15 8 N -0.53 -18.32 10.34 -196.21 -2.03 -20.35 15 9 C 0.11 3.68 11.17 84.59 0.94 4.62 15 10 C -0.21 -8.20 9.69 22.67 0.22 -7.98 15 11 S 0.08 3.84 19.50 -56.49 -1.10 2.74 15 12 C -0.02 -1.26 6.24 22.79 0.14 -1.11 15 13 C -0.34 -15.37 8.89 23.11 0.21 -15.17 15 14 H 0.13 5.07 6.87 -2.91 -0.02 5.05 15 15 C 0.01 0.23 5.50 85.33 0.47 0.70 15 16 N -0.77 -33.58 10.73 21.88 0.23 -33.35 15 17 Si 1.02 29.68 29.56 68.60 2.03 31.71 15 18 H -0.24 -6.66 7.11 99.48 0.71 -5.95 15 19 H -0.26 -7.30 7.11 99.48 0.71 -6.60 15 20 H -0.26 -7.32 7.11 99.48 0.71 -6.62 15 21 H 0.05 1.93 8.14 -2.38 -0.02 1.91 15 22 H 0.05 2.02 8.14 -2.39 -0.02 2.00 15 23 H 0.07 2.51 7.07 -2.39 -0.02 2.50 15 24 H 0.13 5.10 7.90 -2.91 -0.02 5.08 15 25 H 0.18 4.67 8.06 -2.91 -0.02 4.65 15 26 H 0.18 4.64 8.06 -2.91 -0.02 4.61 15 27 H 0.13 4.89 7.40 -2.91 -0.02 4.87 15 28 H 0.32 11.99 8.29 -92.71 -0.77 11.22 15 Total: -1.00 -59.76 264.05 3.23 -56.53 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 1.18 Total: 22.72 kcal Atomic # 6 Polarization: -40.96 SS G_CDS: 4.68 Total: -36.28 kcal Atomic # 7 Polarization: -73.86 SS G_CDS: -3.56 Total: -77.42 kcal Atomic # 14 Polarization: 29.68 SS G_CDS: 2.03 Total: 31.71 kcal Atomic # 16 Polarization: 3.84 SS G_CDS: -1.10 Total: 2.74 kcal Total: -59.76 3.23 -56.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082419669.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.501 kcal (2) G-P(sol) polarization free energy of solvation -59.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds